--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Dec 01 10:40:07 2014 -0500
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="trimmomatic" version="0.32">
+      <install version="1.0">
+	<actions>
+	  <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action>
+	  <action type="move_file">
+	    <source>trimmomatic-0.32.jar</source>
+	    <destination>$INSTALL_DIR</destination>
+	  </action>
+          <action type="move_directory_files">
+            <source_directory>adapters</source_directory>
+            <destination_directory>$INSTALL_DIR/adapters</destination_directory>
+          </action>
+	  <action type="set_environment">
+	    <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+	  </action>
+	  <action type="set_environment">
+	    <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
+	  </action>
+	</actions>
+      </install>
+      <readme>Trimmomatic requires the Java Runtime Environment
+      </readme>
+    </package>
+</tool_dependency>
+