Mercurial > repos > plus91-technologies > softsearch
changeset 25:06e32c8b5682 draft
Deleted selected files
| author | plus91-technologies |
|---|---|
| date | Mon, 09 Jun 2014 09:58:04 -0400 |
| parents | 8578d978014c |
| children | 92d8479f1616 |
| files | README |
| diffstat | 1 files changed, 0 insertions(+), 39 deletions(-) [+] |
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--- a/README Mon Jun 09 06:02:39 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,39 +0,0 @@ -SoftSearch Integrate through galaxy tool shed Guide - -1. What to do for SoftSearch. - - must login as a admin, for that you may change the universe_wsgi.ini file like remove comment. - #admin_users = name@sample.com - - -2. How to install. - - Go to Admin at top of galaxy and select "Search and browse tool sheds" from tool sheds, select "galaxy main - tool shed" and type "softsearch" and install.(It download all binaries). - - -3. Select fasta file from database. - - --Select fasta_indexes.loc file for that go to shed_tools/toolshed.g2.bx.psu.edu/repos/plus91-technologies/softsearch/ - 3837fa11246b/softsearch/tool-data/ - - --open the fasta_indexes.loc file and make changes like - - <unique_build_id> <dbkey> <display_name> <file_base_path> - - eg: hg19full hg19 Human (Homo sapiens): hg19 Full /depot/data2/galaxy/hg19/sam/hg19full.fa - - --open shed_tool_data_table_conf.xml file and add following. - - <tables> - <table name="fasta_indexes" comment_char="#"> - <columns>value, dbkey, name, path</columns> - <file path="/path/to/fasta_indexes.loc" /> - </table> - </tables> - - - -Notes: - -- It is a dependent tool it may require samtools(version above 0.1.18)