Mercurial > repos > pmac > reformatplateslineartotabular

<tool id="reformatPlatesLinearToTabular" name="Reformat Plates Linear To Tabular" version="1.0.0">

  <command interpreter="perl">
  	reformatPlatesLinearToTabular.pl $inputFile1 $outputFile1
  </command>

  <inputs>
  	<param format="tabular" name="inputFile1" type="data" label="Select the linear plates file"/>
  </inputs>

  <outputs>
    <data format="tabular" name="outputFile1"/>
  </outputs>

  <tests>
    <test>
      <param name="inputFile1" value="150615-HR-12015-01A.linear" />
      <output name="outputFile1" file="150615-HR-12015-01A.tabular" />
    </test>
  </tests>

  <help>

.. class:: infomark

**What it does**

This program converts a plates table from a linear format to a tabular format.


**Example**

If the plates table consisted of::

	#Well	Table_1	Table_2
	A01	1654	6
	A02	1719	8
	A03	1624	19
	A04	1518	6
	A05	1587	12
	A06	1517	8
	A07	1638	9
	A08	1733	7
	A09	1617	6
	A10	1722	8
	A11	1665	7
	A12	1536	9
	A13	1636	13
	A14	1691	8
	A15	1773	8
	A16	1554	12
	A17	1651	13
	A18	1670	7
	A19	1748	7
	A20	1541	7
	A21	1549	9
	A22	1550	8
	A23	1615	6
	A24	NA	NA
	B01	1553	5
	B02	1588	8
	B03	1557	6
	B04	1786	7
	B05	1635	6
	B06	1679	6
	B07	1533	6
	B08	1720	7
	B09	1562	6
	B10	1577	6
	B11	1713	6
	B12	1526	6
	B13	1559	7
	B14	1706	7
	B15	1690	6
	B16	1707	6
	B17	1651	6
	B18	1687	7
	B19	1584	6
	B20	1638	6
	B21	1722	6
	B22	1562	6
	B23	1696	9
	B24	NA	NA
	C01	1579	6
	C02	1568	14
	C03	1684	8
	C04	1501	12
	C05	1546	22
	C06	1718	9
	C07	1569	11
	C08	1532	8
	C09	1530	11
	C10	1572	12
	C11	1517	12
	C12	1573	8
	C13	1518	21
	C14	1585	16
	C15	1595	17
	C16	1505	9
	C17	1593	10
	C18	1735	7
	C19	1548	8
	C20	1534	10
	C21	1512	6
	C22	1577	17
	C23	1519	19
	C24	NA	NA
	D01	1551	7
	D02	502	25
	D03	1764	6
	D04	1827	7
	D05	1587	6
	D06	1655	6
	D07	1625	7
	D08	1549	6
	D09	1798	7
	D10	1689	6
	D11	1588	7
	D12	1630	7
	D13	1620	7
	D14	1595	6
	D15	1711	6
	D16	1504	6
	D17	1511	6
	D18	1645	6
	D19	1608	6
	D20	1745	7
	D21	1525	5
	D22	1646	7
	D23	674	25
	D24	NA	NA
	E01	1809	7
	E02	1624	8
	E03	1791	6
	E04	1556	17
	E05	1530	7
	E06	1604	10
	E07	1610	14
	E08	1620	11
	E09	1506	7
	E10	1609	15
	E11	1620	7
	E12	1531	19
	E13	1534	8
	E14	1723	7
	E15	1600	15
	E16	1480	25
	E17	1714	7
	E18	1574	9
	E19	1658	8
	E20	1634	7
	E21	1632	10
	E22	1671	8
	E23	1639	8
	E24	NA	NA
	F01	1804	6
	F02	1815	6
	F03	1644	7
	F04	1618	6
	F05	1686	6
	F06	1523	8
	F07	1501	6
	F08	1587	7
	F09	1502	6
	F10	1742	6
	F11	1621	6
	F12	1638	8
	F13	1640	7
	F14	1588	6
	F15	1542	6
	F16	1720	6
	F17	1503	7
	F18	1788	6
	F19	1571	6
	F20	1547	5
	F21	1653	8
	F22	1752	6
	F23	1687	7
	F24	NA	NA
	G01	1540	6
	G02	1567	22
	G03	1587	7
	G04	1564	18
	G05	1671	9
	G06	1552	18
	G07	1555	7
	G08	1571	11
	G09	1693	7
	G10	1692	7
	G11	1617	11
	G12	1590	7
	G13	1589	16
	G14	1546	8
	G15	1648	8
	G16	1583	10
	G17	1538	17
	G18	1560	9
	G19	1553	6
	G20	1598	9
	G21	1561	16
	G22	1523	11
	G23	1599	13
	G24	NA	NA
	H01	1700	6
	H02	513	25
	H03	1615	6
	H04	1656	6
	H05	1796	6
	H06	1547	6
	H07	1563	7
	H08	1598	6
	H09	1555	6
	H10	1621	6
	H11	1644	7
	H12	1760	7
	H13	1525	6
	H14	1541	7
	H15	1635	6
	H16	1527	6
	H17	1651	6
	H18	1643	7
	H19	1593	5
	H20	1551	8
	H21	1507	6
	H22	1504	5
	H23	522	25
	H24	NA	NA
	I01	1604	7
	I02	1591	9
	I03	1626	11
	I04	1585	11
	I05	1522	17
	I06	1546	9
	I07	1520	6
	I08	1582	9
	I09	1664	9
	I10	1589	10
	I11	1508	10
	I12	1505	23
	I13	1577	7
	I14	1657	12
	I15	1560	7
	I16	1561	12
	I17	1597	14
	I18	1505	13
	I19	1646	9
	I20	1579	15
	I21	1602	13
	I22	1621	12
	I23	1583	6
	I24	NA	NA
	J01	1520	6
	J02	1577	17
	J03	1692	8
	J04	1510	5
	J05	1691	7
	J06	1747	7
	J07	1744	7
	J08	1724	8
	J09	1666	6
	J10	1645	6
	J11	1637	6
	J12	1706	7
	J13	1672	6
	J14	1522	7
	J15	1535	5
	J16	1528	6
	J17	1569	6
	J18	1592	8
	J19	1812	7
	J20	1806	7
	J21	1525	6
	J22	1675	7
	J23	1540	22
	J24	NA	NA
	K01	1626	6
	K02	1513	6
	K03	1624	7
	K04	1530	7
	K05	1650	11
	K06	1610	11
	K07	1644	11
	K08	1522	11
	K09	1544	14
	K10	1532	7
	K11	1229	25
	K12	1520	11
	K13	1540	9
	K14	1630	10
	K15	1668	8
	K16	1519	17
	K17	1657	8
	K18	1509	21
	K19	1543	7
	K20	1513	12
	K21	1564	7
	K22	1660	10
	K23	1632	6
	K24	NA	NA
	L01	1676	7
	L02	507	25
	L03	1682	6
	L04	1595	7
	L05	1557	6
	L06	1593	7
	L07	1734	6
	L08	1519	6
	L09	1550	6
	L10	1528	6
	L11	1781	7
	L12	1500	6
	L13	1573	6
	L14	1524	6
	L15	1735	7
	L16	1523	5
	L17	1503	6
	L18	1621	6
	L19	1559	6
	L20	1795	6
	L21	1667	6
	L22	1560	8
	L23	420	25
	L24	NA	NA
	M01	1625	6
	M02	1548	19
	M03	1538	25
	M04	1731	7
	M05	1607	14
	M06	1637	7
	M07	1544	9
	M08	1703	9
	M09	1617	6
	M10	1635	8
	M11	1528	16
	M12	1532	6
	M13	1583	7
	M14	1555	8
	M15	1551	9
	M16	1580	15
	M17	1655	6
	M18	1662	7
	M19	1591	8
	M20	1758	8
	M21	1623	8
	M22	1597	6
	M23	1561	18
	M24	NA	NA
	N01	1660	6
	N02	592	25
	N03	1595	7
	N04	1527	5
	N05	1745	6
	N06	1543	6
	N07	1529	5
	N08	1691	6
	N09	1705	7
	N10	1612	6
	N11	1769	7
	N12	1624	6
	N13	1673	7
	N14	1683	7
	N15	1637	6
	N16	1786	7
	N17	1593	6
	N18	1636	6
	N19	1614	6
	N20	1650	6
	N21	1553	6
	N22	1671	6
	N23	628	25
	N24	NA	NA
	O01	1692	6
	O02	1701	8
	O03	1611	10
	O04	1370	25
	O05	1537	10
	O06	1538	14
	O07	1582	8
	O08	1515	11
	O09	1587	6
	O10	1582	6
	O11	1660	10
	O12	1544	10
	O13	1544	8
	O14	1603	9
	O15	1592	12
	O16	1518	11
	O17	1606	6
	O18	1565	10
	O19	1617	6
	O20	1543	18
	O21	1649	7
	O22	1710	8
	O23	1788	7
	O24	NA	NA
	P01	1818	7
	P02	1611	5
	P03	1736	7
	P04	1642	6
	P05	1557	5
	P06	1606	6
	P07	1558	6
	P08	1627	6
	P09	1579	6
	P10	1733	6
	P11	1520	6
	P12	1558	7
	P13	1804	7
	P14	1630	6
	P15	1576	6
	P16	1740	7
	P17	1578	6
	P18	1544	6
	P19	1692	6
	P20	1560	6
	P21	1552	6
	P22	1790	7
	P23	1537	6
	P24	NA	NA

Running the program will give the following output::


	Table_1

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24
	A	1654	1719	1624	1518	1587	1517	1638	1733	1617	1722	1665	1536	1636	1691	1773	1554	1651	1670	1748	1541	1549	1550	1615
	B	1553	1588	1557	1786	1635	1679	1533	1720	1562	1577	1713	1526	1559	1706	1690	1707	1651	1687	1584	1638	1722	1562	1696
	C	1579	1568	1684	1501	1546	1718	1569	1532	1530	1572	1517	1573	1518	1585	1595	1505	1593	1735	1548	1534	1512	1577	1519
	D	1551	502	1764	1827	1587	1655	1625	1549	1798	1689	1588	1630	1620	1595	1711	1504	1511	1645	1608	1745	1525	1646	674
	E	1809	1624	1791	1556	1530	1604	1610	1620	1506	1609	1620	1531	1534	1723	1600	1480	1714	1574	1658	1634	1632	1671	1639
	F	1804	1815	1644	1618	1686	1523	1501	1587	1502	1742	1621	1638	1640	1588	1542	1720	1503	1788	1571	1547	1653	1752	1687
	G	1540	1567	1587	1564	1671	1552	1555	1571	1693	1692	1617	1590	1589	1546	1648	1583	1538	1560	1553	1598	1561	1523	1599
	H	1700	513	1615	1656	1796	1547	1563	1598	1555	1621	1644	1760	1525	1541	1635	1527	1651	1643	1593	1551	1507	1504	522
	I	1604	1591	1626	1585	1522	1546	1520	1582	1664	1589	1508	1505	1577	1657	1560	1561	1597	1505	1646	1579	1602	1621	1583
	J	1520	1577	1692	1510	1691	1747	1744	1724	1666	1645	1637	1706	1672	1522	1535	1528	1569	1592	1812	1806	1525	1675	1540
	K	1626	1513	1624	1530	1650	1610	1644	1522	1544	1532	1229	1520	1540	1630	1668	1519	1657	1509	1543	1513	1564	1660	1632
	L	1676	507	1682	1595	1557	1593	1734	1519	1550	1528	1781	1500	1573	1524	1735	1523	1503	1621	1559	1795	1667	1560	420
	M	1625	1548	1538	1731	1607	1637	1544	1703	1617	1635	1528	1532	1583	1555	1551	1580	1655	1662	1591	1758	1623	1597	1561
	N	1660	592	1595	1527	1745	1543	1529	1691	1705	1612	1769	1624	1673	1683	1637	1786	1593	1636	1614	1650	1553	1671	628
	O	1692	1701	1611	1370	1537	1538	1582	1515	1587	1582	1660	1544	1544	1603	1592	1518	1606	1565	1617	1543	1649	1710	1788
	P	1818	1611	1736	1642	1557	1606	1558	1627	1579	1733	1520	1558	1804	1630	1576	1740	1578	1544	1692	1560	1552	1790	1537

	Table_2

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24
	A	6	8	19	6	12	8	9	7	6	8	7	9	13	8	8	12	13	7	7	7	9	8	6
	B	5	8	6	7	6	6	6	7	6	6	6	6	7	7	6	6	6	7	6	6	6	6	9
	C	6	14	8	12	22	9	11	8	11	12	12	8	21	16	17	9	10	7	8	10	6	17	19
	D	7	25	6	7	6	6	7	6	7	6	7	7	7	6	6	6	6	6	6	7	5	7	25
	E	7	8	6	17	7	10	14	11	7	15	7	19	8	7	15	25	7	9	8	7	10	8	8
	F	6	6	7	6	6	8	6	7	6	6	6	8	7	6	6	6	7	6	6	5	8	6	7
	G	6	22	7	18	9	18	7	11	7	7	11	7	16	8	8	10	17	9	6	9	16	11	13
	H	6	25	6	6	6	6	7	6	6	6	7	7	6	7	6	6	6	7	5	8	6	5	25
	I	7	9	11	11	17	9	6	9	9	10	10	23	7	12	7	12	14	13	9	15	13	12	6
	J	6	17	8	5	7	7	7	8	6	6	6	7	6	7	5	6	6	8	7	7	6	7	22
	K	6	6	7	7	11	11	11	11	14	7	25	11	9	10	8	17	8	21	7	12	7	10	6
	L	7	25	6	7	6	7	6	6	6	6	7	6	6	6	7	5	6	6	6	6	6	8	25
	M	6	19	25	7	14	7	9	9	6	8	16	6	7	8	9	15	6	7	8	8	8	6	18
	N	6	25	7	5	6	6	5	6	7	6	7	6	7	7	6	7	6	6	6	6	6	6	25
	O	6	8	10	25	10	14	8	11	6	6	10	10	8	9	12	11	6	10	6	18	7	8	7
	P	7	5	7	6	5	6	6	6	6	6	6	7	7	6	6	7	6	6	6	6	6	7	6

  </help>

</tool>
author	pmac
date	Wed, 01 Jun 2016 03:55:27 -0400
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