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planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
author | portiahollyoak |
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date | Fri, 22 Apr 2016 12:07:53 -0400 |
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<tool id ="change_fasta_header_using_tabular_file" name="Change fasta header" version=" 0.1.0"> <description>using a tabular file</description> <stdio> <exit_code range="1:" /> </stdio> <command>python $__tool_directory__/change_fasta_header_using_tabular_file.py --tab_input "$input1" --fasta_input "$input2" "$output" </command> <inputs> <param format="tabular" name="input1" type="data" label="Tabular File"/> <param format="fasta" name="input2" type="data" label="Fasta file"/> </inputs> <outputs> <data format="fasta" name="output" /> </outputs> <tests> <test> <param name="input1" value="tabular_file.tsv" ftype="tabular"/> <param name="input2" value="genbank_input.fasta" ftype="fasta"/> <output name="output" file="output.fasta"/> </test> </tests> <help> <![CDATA[ This tool takes 2 input files, a tabular file with text to replace in the first column, and a replacement text in the 2nd column, as well as a fasta file. Every occurence of values in the first column of the tabular file will be replaced with the value in the 2nd column. ----- *Example* **Fasta header** :: >RT1C ATGCATGC **Tabular file** :: RT1C Rt1c **Output file** :: >Rt1c ATGCATGC ]]> </help> </tool>