Mercurial > repos > ppericard > viscorvar

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 21d09ff286a496ff475f32626d88dd42423ae663"
author ppericard
date Tue, 07 Sep 2021 10:40:08 +0000
parents d4e9f7546dfa
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1 <tool id="viscorvar_computematsimilarity" name="visCorVar computeMatSimilarity" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true">
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3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
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5 <macros>
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6 <import>macros.xml</import>
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7 <import>macros_viscorvar.xml</import>
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8 </macros>
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10 <expand macro="requirements"/>
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11 <expand macro="stdio"/>
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13 <command detect_errors="aggressive"><![CDATA[
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15 @COMMAND_RSCRIPT@/viscorvar_computematsimilarity.R
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17 --input_rdata ${input_rdata}
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19 --output_rdata ${output_rdata}
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21 ]]></command>
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22 <inputs>
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23 <param name="input_rdata" type="data" format="rdata"
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24 label="Input RData file"
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25 help="this is the RData output file from matCorAddVar function"/>
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26 </inputs>
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28 <outputs>
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29 <data name="output_rdata" format="rdata" label="${tool.name}_output.RData" />
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30 </outputs>
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32 <tests>
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33 </tests>
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35 <help><![CDATA[
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37 @HELP_AUTHORS@
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39 ==============================
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40 visCorVar computeMatSimilarity
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41 ==============================
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43 -----------
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44 Description
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45 -----------
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47 This tool is a pre-processing step in order to create networks. It computes an
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48 approximation of the correlation between a variable of a omics dataset and a variable of
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49 an other omics dataset.
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51 -----------------
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52 Workflow position
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53 -----------------
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55 **Upstream tools**
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57 ======================== ===================================== ========
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58 Name Output file Format
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59 ======================== ===================================== ========
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60 visCorVar.matCorAddVar viscorvar_matcoraddvar_output.RData rdata
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61 ======================== ===================================== ========
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63 **Downstream tools**
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65 ====================== ============================================= ========
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66 Name Output file Format
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67 ====================== ============================================= ========
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68 visCorVar.networkVar viscorvar_computematsimilarity_output.RData rdata
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69 ====================== ============================================= ========
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71 ---------------------------------------------------
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73 -----------
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74 Input files
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75 -----------
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77 +------------------------------------------+------------+
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78 | Parameter : num + label | Format |
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79 +==========================================+============+
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80 | 1 : Rdata visCorVar.matCorAddVar output | Rdata |
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81 +------------------------------------------+------------+
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83 ----------
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84 Parameters
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85 ----------
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87 @HELP_MANUAL@
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89 ------------
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90 Output files
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91 ------------
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93 viscorvar_computematsimilarity_output.RData
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94 | RData output
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95 | Contains the `computeMatSimilarity_result` R object containing the result of the computeMatSimilarity function
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96
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98 ]]></help>
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100 <expand macro="citations" />
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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88c1fd2ac110 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 21d09ff286a496ff475f32626d88dd42423ae663"
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102 </tool>