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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author ppericard
date Tue, 17 Nov 2020 13:01:44 +0000
parents c8533e9298e5
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c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
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1 # galaxy-viscorvar
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3 Galaxy wrappers for the visCorVar R package and selected functions from the mixOmics R package (block.splsda, plotIndiv and plotVar).
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5 ## Install from Toolshed
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7 Install `viscorvar` repository from Galaxy ToolShed (owner: `ppericard`)
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9 ## Install for developers
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11 Clone repository
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13 ```
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14 $ git clone --recurse-submodules https://gitlab.com/bilille/galaxy-viscorvar.git
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15 ```
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17 Add `galaxy-viscorvar` repository to `$GALAXYDIR/tools` directory.
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19 Edit `$GALAXYDIR/config/tool_conf.xml` and add:
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21 ```
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22 <section id="development" name="Tools development">
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23 <label id="viscorvar" name="visCorVar" />
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24 <tool file="galaxy-viscorvar/mixomics_blocksplsda.xml" />
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25 <tool file="galaxy-viscorvar/mixomics_plotindiv.xml" />
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26 <tool file="galaxy-viscorvar/mixomics_plotvar.xml" />
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27 <tool file="galaxy-viscorvar/viscorvar_matcoraddvar.xml" />
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28 <tool file="galaxy-viscorvar/viscorvar_circlecor.xml" />
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29 <tool file="galaxy-viscorvar/viscorvar_computematsimilarity.xml" />
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30 <tool file="galaxy-viscorvar/viscorvar_networkvar.xml" />
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31 </section>
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32 ```
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