Mercurial > repos > ppericard > viscorvar
comparison computeMatSimilarity.xml @ 0:d0b77b926863 draft
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
| author | ppericard |
|---|---|
| date | Tue, 23 Jun 2020 19:57:35 -0400 |
| parents | |
| children | e93350dc99f1 |
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| -1:000000000000 | 0:d0b77b926863 |
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| 1 <tool id="computeMatSimilarity" name="computeMatSimilarity" version="1.0" profile="16.04" workflow_compatible="true"> | |
| 2 | |
| 3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description> | |
| 4 | |
| 5 <requirements> | |
| 6 <requirement type="package" version="6.12">bioconductor-mixomics</requirement> <!-- Remove when viscorvar is available via conda --> | |
| 7 <requirement type="package" version="2.0">r-argparse</requirement> | |
| 8 </requirements> | |
| 9 | |
| 10 <stdio> | |
| 11 <!-- <exit_code range="1:" level="fatal" /> --> | |
| 12 </stdio> | |
| 13 | |
| 14 <command detect_errors="aggressive"> | |
| 15 <![CDATA[ | |
| 16 Rscript | |
| 17 ${__tool_directory__}/computeMatSimilarity_wrapper.R | |
| 18 --input_rdata ${input_rdata} | |
| 19 --output_rdata ${output_rdata} | |
| 20 ]]> | |
| 21 </command> | |
| 22 | |
| 23 <inputs> | |
| 24 <param name="input_rdata" type="data" format="rdata" | |
| 25 label="Input RData file" | |
| 26 help="output RData file from matCorAddVar"/> | |
| 27 </inputs> | |
| 28 | |
| 29 <outputs> | |
| 30 <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" /> | |
| 31 </outputs> | |
| 32 | |
| 33 <tests> | |
| 34 </tests> | |
| 35 | |
| 36 <help> | |
| 37 </help> | |
| 38 | |
| 39 </tool> |