Mercurial > repos > ppericard > viscorvar

annotate computeMatSimilarity.xml @ 0:d0b77b926863 draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
author ppericard
date Tue, 23 Jun 2020 19:57:35 -0400
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children e93350dc99f1
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d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
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1 <tool id="computeMatSimilarity" name="computeMatSimilarity" version="1.0" profile="16.04" workflow_compatible="true">
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3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
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5 <requirements>
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6 <requirement type="package" version="6.12">bioconductor-mixomics</requirement> <!-- Remove when viscorvar is available via conda -->
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7 <requirement type="package" version="2.0">r-argparse</requirement>
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8 </requirements>
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9
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10 <stdio>
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11 <!-- <exit_code range="1:" level="fatal" /> -->
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12 </stdio>
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13
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14 <command detect_errors="aggressive">
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15 <![CDATA[
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16 Rscript
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17 ${__tool_directory__}/computeMatSimilarity_wrapper.R
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18 --input_rdata ${input_rdata}
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19 --output_rdata ${output_rdata}
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20 ]]>
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21 </command>
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23 <inputs>
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24 <param name="input_rdata" type="data" format="rdata"
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25 label="Input RData file"
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26 help="output RData file from matCorAddVar"/>
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27 </inputs>
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29 <outputs>
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30 <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" />
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31 </outputs>
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33 <tests>
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34 </tests>
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36 <help>
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37 </help>
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39 </tool>