diff viscorvar_networkvar.xml @ 4:d4e9f7546dfa draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author ppericard
date Tue, 17 Nov 2020 13:01:44 +0000
parents df8428358b7f
children 88c1fd2ac110
line wrap: on
line diff
--- a/viscorvar_networkvar.xml	Fri Oct 23 11:26:18 2020 +0000
+++ b/viscorvar_networkvar.xml	Tue Nov 17 13:01:44 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
+<tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true">
 
     <description>creates a network between selected variables of datasets and the response variables. In the network, the similarity between two variables is associated with the link between these two variables.</description>
 
@@ -23,10 +23,10 @@
         @COMMAND_LOG_EXIT@
 
     ]]></command>
-
+   
     <inputs>
         <param name="mat_similarity_rdata" type="data" format="rdata"
-               label="Input computeMatSimilarity RData file"
+               label="this is the RData output file from the computeMatSimilarity function"
                help="output RData file from computeMatSimilarity"/>
         <param name="var_list_file" type="data" format="tabular"
                label="Variables list file"
@@ -71,7 +71,12 @@
 Description
 -----------
 
-Bla bla...
+This tool creates a network of correlated variables for omics datasets. The determination of
+the omics datasets which can be visualized is made by the tool matCorAddVar. This network can
+be exported to graphml format and visualized with Cytoscape. The link between two variables
+is associated with the correlation between two variables : a threshold can be used in
+Cytoscape to get a network of variables whose correlation is greater than this threshold
+in absolute value.
 
 -----------------
 Workflow position