Mercurial > repos > ppericard > viscorvar
diff viscorvar_networkvar.xml @ 4:d4e9f7546dfa draft
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author | ppericard |
---|---|
date | Tue, 17 Nov 2020 13:01:44 +0000 |
parents | df8428358b7f |
children | 88c1fd2ac110 |
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--- a/viscorvar_networkvar.xml Fri Oct 23 11:26:18 2020 +0000 +++ b/viscorvar_networkvar.xml Tue Nov 17 13:01:44 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true"> +<tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true"> <description>creates a network between selected variables of datasets and the response variables. In the network, the similarity between two variables is associated with the link between these two variables.</description> @@ -23,10 +23,10 @@ @COMMAND_LOG_EXIT@ ]]></command> - + <inputs> <param name="mat_similarity_rdata" type="data" format="rdata" - label="Input computeMatSimilarity RData file" + label="this is the RData output file from the computeMatSimilarity function" help="output RData file from computeMatSimilarity"/> <param name="var_list_file" type="data" format="tabular" label="Variables list file" @@ -71,7 +71,12 @@ Description ----------- -Bla bla... +This tool creates a network of correlated variables for omics datasets. The determination of +the omics datasets which can be visualized is made by the tool matCorAddVar. This network can +be exported to graphml format and visualized with Cytoscape. The link between two variables +is associated with the correlation between two variables : a threshold can be used in +Cytoscape to get a network of variables whose correlation is greater than this threshold +in absolute value. ----------------- Workflow position