Mercurial > repos > pravs > protein_rna_correlation
changeset 2:412403eec79c draft
planemo upload
| author | pravs |
|---|---|
| date | Sun, 17 Jun 2018 04:44:29 -0400 |
| parents | 796a42e10f77 |
| children | 1ce4407692a0 |
| files | protein_rna_correlation.r protein_rna_correlation.xml |
| diffstat | 2 files changed, 11 insertions(+), 8 deletions(-) [+] |
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--- a/protein_rna_correlation.r Sun Jun 17 04:28:12 2018 -0400 +++ b/protein_rna_correlation.r Sun Jun 17 04:44:29 2018 -0400 @@ -113,14 +113,14 @@ #====================================================================== # Load libraries #====================================================================== - library(data.table, warn.conflicts=FALSE); - library(lattice, warn.conflicts=FALSE); - library(grid, warn.conflicts=FALSE); - library(nlme, warn.conflicts=FALSE); - library(gplots, warn.conflicts=FALSE); - library(MASS, warn.conflicts=FALSE); - library(DMwR, warn.conflicts=FALSE); - library(mgcv, warn.conflicts=FALSE); + library(data.table); + library(lattice); + library(grid); + library(nlme); + library(gplots); + library(MASS); + library(DMwR); + library(mgcv); #=============================================================================================================
--- a/protein_rna_correlation.xml Sun Jun 17 04:28:12 2018 -0400 +++ b/protein_rna_correlation.xml Sun Jun 17 04:44:29 2018 -0400 @@ -10,6 +10,9 @@ <requirement type="package" version="0.4.1">DMwR</requirement> <requirement type="package" version="1.11.4">data.table</requirement> <requirement type="package" version="3.0.1">gplots</requirement> + <requirement type="package" version="0.20-35">lattice</requirement> + <requirement type="package" version="3.5.0">grid</requirement> + <requirement type="package" version="3.1-137">nlme</requirement> </requirements> <command detect_errors="exit_code" interpreter="Rscript"><![CDATA[protein_rna_correlation.r $pe_exp $ge_exp $pe_idcol $ge_idcol $pe_expcol $ge_expcol $pe_idtype $ge_idtype $organism_map $writeMapUnmap $doScale "$html_file" "$html_file.files_path"]]></command>