Mercurial > repos > proteomisc > preprocess_dataset
diff preprocess_datasets/OneColor.Rmd @ 41:8aaf6fdb06d6 draft
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author | proteomisc |
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date | Sat, 16 Dec 2023 12:30:14 +0000 |
parents | ebf6607b4e6a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/preprocess_datasets/OneColor.Rmd Sat Dec 16 12:30:14 2023 +0000 @@ -0,0 +1,370 @@ +<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="fr" lang="fr"><head> + <meta http-equiv="Content-Type" content="text/html; charset=windows-1252"> + <title>Preprocessing Plots Before and After</title> + <style> + /* css racine */ + +body { +/* font-family: Comic Sans MS;*/ +} + +div.research { + background-color: #33ffff; /*#208090 */ /*#228491*/; + color: #0000ff; /* ffffff */ +} + +div.ensg { + background-color: #bbee00; + color: #0000ff; +} + +div.research span.invisible { + visibility:hidden; +} + +kbd { + color: #000000; +} + +pre { + color: #000000; +} + +A:link { + color: #0000ee; /*#ffffff;*/ +} + +A:active { + color: #ff0000; /* #ffffff */ +} + +A:hover { +/* font-size: 2em; */ + text-decoration: none; + color: #0000ee; /* ffffff */ + background-color: #FFFF33; +} + +h3 { + color: #FF0000; +} + +h4 { + color: #FF0000; +} + +div.correction { + color: #008800; 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/* 20px; pour avoir des coins arrondis */ +} + </style> +</head> +<body> +<div class="tpR"> +<h1>Preprocessing</h1> +<p> +Preprocessing of an `r datasetsource` DataSet, issued from +`r technology` +technology. +</p> +<h2>Used methods for each step</h2> + +<h3>Background correction methods</h3> +<pre>method : `r listArguments[["methodBC"]]`</pre> +<h3>Normalization methods</h3> +<pre>method : `r listArguments[["methodNBA"]]`</pre> +<h2>Boxplots</h2> +<h3>Before BG</h3> +<p> +<br> +<img src="boxplot_before_BG.png" width="100%" height="auto"> +<br> +</p> +<h3>After NBA</h3> +<p> +<br> +<img src="boxplot_after_NBA.png" width="100%" height="auto"> +<br> +</p> +<h2>Densities plot</h2> +<h3>Before BG</h3> +<p> +<br> +<img src="densities_plot_before_BG.png" width="100%" height="auto"> +<br> +</p> +<h3>After BG and NBA</h3> +<p> +<br> +<img src="densities_plot_after_BG.png" width="100%" height="auto"> +<br> +</p> +<p> +<br> +<img src="densities_plot_after_NBA.png" width="100%" height="auto"> +<br> +</p> +</body> +</html>