Mercurial > repos > proteore > filter_keywords_values

comparison README.rst @ 5:1e9911190142 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty
author proteore
date Wed, 14 Mar 2018 10:24:54 -0400
parents 593b8a1b2a7b
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12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. 12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
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14 ------------------------------------------------------- 14 -------------------------------------------------------
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16 This tool allows to remove unneeded data (e.g. contaminants, non-significant values) from a proteomics results file (e.g. MaxQuant or Proline output). 16 This tool allows to filter out data according to your specific needs (e.g. contaminants, non-significant values or related to a particular annotation) from a proteomics results file (e.g. MaxQuant or Proline output).
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18 **For each row, if there are more than one protein IDs/protein names/gene names, only the first one will be considered in the output** 18 **For each row, if there are more than one protein IDs/protein names/gene names, only the first one will be considered in the output**
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20 **Filter the file by keywords** 20 **Filter the file by keywords**
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30 TRYP_PIG 30 TRYP_PIG
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32 ALDOA_RABBIT 32 ALDOA_RABBIT
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34 **The line that contains these keywords will be eliminated from input file.** 34 **The line that contains these keywords will be filtered from input file and provided in a separate file.**
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36 **Keywords search can be applied by performing either exact match or partial one by using the following option** 36 **Keywords search can be applied by performing either exact match or partial one by using the following option**
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38 - If you choose **Yes**, only the fields that contains exactly the same content will be removed. 38 - If you choose **Yes**, only the fields that contains exactly the same content will be filtered.
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40 - If you choose **No**, all the fields containing the keyword will be removed. 40 - If you choose **No**, all the fields containing the keyword will be filtered.
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42 For example: 42 For example:
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44 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is removed. 44 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is filtered (and not "Kinase").
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46 **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so on) are removed. 46 **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so on) are removed.
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48 **Filter the file by values** 48 **Filter the file by values**
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56 The tool will produce 2 output files. 56 The tool will produce 2 output files.
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58 * A text file containing the resulting filtered input file. 58 * A text file containing the resulting filtered input file.
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60 * A text file containing the rows removed from the input file. 60 * A text file containing the rows that have been filtered from the input file.