Mercurial > repos > proteore > filter_keywords_values
diff README.rst @ 5:1e9911190142 draft
planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty
author | proteore |
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date | Wed, 14 Mar 2018 10:24:54 -0400 |
parents | 593b8a1b2a7b |
children | c6ba1e6f6869 |
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--- a/README.rst Thu Mar 08 10:41:08 2018 -0500 +++ b/README.rst Wed Mar 14 10:24:54 2018 -0400 @@ -13,7 +13,7 @@ ------------------------------------------------------- -This tool allows to remove unneeded data (e.g. contaminants, non-significant values) from a proteomics results file (e.g. MaxQuant or Proline output). +This tool allows to filter out data according to your specific needs (e.g. contaminants, non-significant values or related to a particular annotation) from a proteomics results file (e.g. MaxQuant or Proline output). **For each row, if there are more than one protein IDs/protein names/gene names, only the first one will be considered in the output** @@ -31,17 +31,17 @@ ALDOA_RABBIT -**The line that contains these keywords will be eliminated from input file.** +**The line that contains these keywords will be filtered from input file and provided in a separate file.** **Keywords search can be applied by performing either exact match or partial one by using the following option** -- If you choose **Yes**, only the fields that contains exactly the same content will be removed. +- If you choose **Yes**, only the fields that contains exactly the same content will be filtered. -- If you choose **No**, all the fields containing the keyword will be removed. +- If you choose **No**, all the fields containing the keyword will be filtered. For example: -**Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is removed. +**Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is filtered (and not "Kinase"). **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so on) are removed. @@ -57,4 +57,4 @@ * A text file containing the resulting filtered input file. -* A text file containing the rows removed from the input file. \ No newline at end of file +* A text file containing the rows that have been filtered from the input file.