Mercurial > repos > proteore > filter_keywords_values

changeset 3:593b8a1b2a7b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit f338a1cf9a782938c228f9bd0ea19ef22eec35d8-dirty
author proteore
date Wed, 07 Mar 2018 08:44:34 -0500
parents 330d6c7b1916
children 2c1012e0a628
files README.rst filter_kw_val.xml
diffstat 2 files changed, 24 insertions(+), 26 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Thu Mar 01 08:15:55 2018 -0500
+++ b/README.rst	Wed Mar 07 08:44:34 2018 -0500
@@ -1,16 +1,17 @@
-Wrapper for Filter out keywords and/or numerical values tool
-============================================================
+Wrapper for Filter by keywords or numerical values Tool
+=======================================================
 
 **Authors**
 
 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+
 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
 
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
 
 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
 
-------------------------------------------------------------
+-------------------------------------------------------
 
 This tool allows to remove unneeded data (e.g. contaminants, non-significant values) from a proteomics results file (e.g. MaxQuant or Proline output).
 
@@ -20,30 +21,30 @@
 
 Several options can be used. For each option, you can fill in the field or upload a file which contains the keywords.
 
-- If you choose to fill in the field, the keywords should be separated by ":", for example: A8K2U0:Q5TA79:O43175    
-       
-- If you choose to upload a file in a text format in which each line is a keyword, for example: 
+- If you choose to fill in the field, the keywords should be separated by ";", for example: A8K2U0;Q5TA79;O43175
+
+- If you choose to upload a file in a text format in which each line is a keyword, for example:
 
- REV  
- 
- TRYP_PIG  
- 
- ALDOA_RABBIT  
-      
+REV
+
+TRYP_PIG
+
+ALDOA_RABBIT
+
 **The line that contains these keywords will be eliminated from input file.**
-    
-**Keywords search can be applied by performing either exact match or partial one by using the following option**	
-        
-- If you choose **Yes**, only the fields that contains exactly the same content will be removed.	
-                
+
+**Keywords search can be applied by performing either exact match or partial one by using the following option**
+
+- If you choose **Yes**, only the fields that contains exactly the same content will be removed.
+
 - If you choose **No**, all the fields containing the keyword will be removed.
-        
+
 For example:
-	        
+
 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is removed.
-	             
+
 **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so  on) are removed.
-	          	
+
 **Filter the file by values**
 
 You can choose to use one or more options (e.g. to filter out peptides of low intensity value, by q-value, etc.).
@@ -56,7 +57,4 @@
 
 * A text file containing the resulting filtered input file.
 
-* A text file containing the rows removed from the input file. 
-
-
-
+* A text file containing the rows removed from the input file.
\ No newline at end of file
--- a/filter_kw_val.xml	Thu Mar 01 08:15:55 2018 -0500
+++ b/filter_kw_val.xml	Wed Mar 07 08:44:34 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="MQoutputfilter" name="Filter lines by keywords or numerical value" version="0.1.0">
+<tool id="MQoutputfilter" name="Filter by keywords or numerical value" version="0.1.0">
     <description>Filter a file by keywords or numerical values</description>
     <requirements>
     </requirements>