Mercurial > repos > proteore > proteore_clusterprofiler

comparison test-data/cluster_profiler_EGO_CC.csv @ 13:f6107b8ae8f8 draft default tip

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"planemo upload commit be9070db4a3b178ab45ecd9c9c3ab369240f7617-dirty"
author proteore
date Fri, 09 Apr 2021 14:39:05 +0000
parents 4609346d8108
children
comparison
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12:85f039f53414 13:f6107b8ae8f8
1 ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count 1 ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
2 GO:0034774 secretory granule lumen 22/152 111/2939 2.07482731603193e-08 3.16370874431657e-06 2.781282412586e-06 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2 22 2 GO:0034774 secretory granule lumen 40/151 322/19559 4.698082e-37 8.644911e-35 5.879940e-35 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3 40
3 GO:0031983 vesicle lumen 22/152 114/2939 3.4766030157325e-08 3.16370874431657e-06 2.781282412586e-06 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2 22 3 GO:0060205 cytoplasmic vesicle lumen 40/151 326/19559 7.774260e-37 8.644911e-35 5.879940e-35 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3 40
4 GO:0060205 cytoplasmic vesicle lumen 22/152 114/2939 3.4766030157325e-08 3.16370874431657e-06 2.781282412586e-06 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2 22 4 GO:0031983 vesicle lumen 40/151 328/19559 9.974897e-37 8.644911e-35 5.879940e-35 ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3 40
5 GO:0030141 secretory granule 30/152 232/2939 1.22925605779538e-06 8.38967259445349e-05 7.3755363467723e-05 DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/CAT/EEF2/TUBB4B/LYZ/CTSD/DMBT1/SOD1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2 30 5 GO:0101002 ficolin-1-rich granule 24/151 124/19559 4.106422e-27 2.135340e-25 1.452377e-25 JUP/CAT/PKM/HSPA1A/HSPA1B/EEF2/SERPINA1/HSP90AA1/CTSD/HSPA8/PPIA/GSTP1/ALDOA/CAPN1/VCL/HBB/GSN/PNP/CSTB/ALDOC/CTSB/ACTR2/CALML5/KRT1 24
6 GO:0099503 secretory vesicle 30/152 251/2939 6.60174269183974e-06 0.00036045515097445 0.000316883649208308 DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/CAT/EEF2/TUBB4B/LYZ/CTSD/DMBT1/SOD1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2 30 6 GO:1904813 ficolin-1-rich granule lumen 24/151 124/19559 4.106422e-27 2.135340e-25 1.452377e-25 JUP/CAT/PKM/HSPA1A/HSPA1B/EEF2/SERPINA1/HSP90AA1/CTSD/HSPA8/PPIA/GSTP1/ALDOA/CAPN1/VCL/HBB/GSN/PNP/CSTB/ALDOC/CTSB/ACTR2/CALML5/KRT1 24
7 GO:0101002 ficolin-1-rich granule 14/152 72/2939 1.18733421290438e-05 0.000540237066871494 0.000474933685161753 DSP/DSG1/JUP/CAT/EEF2/CTSD/GSTP1/ALDOA/CAPN1/VCL/GSN/PNP/LAMP1/LAMP2 14 7 GO:0001533 cornified envelope 15/151 45/19559 2.864077e-21 1.241100e-19 8.441489e-20 DSP/DSG1/JUP/HRNR/ANXA1/CSTA/DSC3/SPRR1B/CST6/FLG/KRT1/KRT2/KRT10/FLG2/SPRR2E 15
8 GO:0005766 primary lysosome 12/152 61/2939 4.56978270565284e-05 0.00143685132139962 0.00126316599683483 ANXA2/SERPINB3/FABP5/PIGR/TUBB4B/LYZ/SERPINA3/AGA/LAMP1/LAMP2/GDI2/NPC2 12 8 GO:0005775 vacuolar lumen 22/151 173/19559 9.970096e-21 3.703179e-19 2.518761e-19 ANXA2/SERPINB3/FABP5/HRNR/S100A7/ARG1/TUBB4B/LYZ/HSP90AA1/CTSD/HSPA8/GGH/CTSV/SERPINA3/AGA/SERPINB13/CTSB/LAMP2/GDI2/ACTR2/NPC2/DEFA3 22
9 GO:0042582 azurophil granule 12/152 61/2939 4.56978270565284e-05 0.00143685132139962 0.00126316599683483 ANXA2/SERPINB3/FABP5/PIGR/TUBB4B/LYZ/SERPINA3/AGA/LAMP1/LAMP2/GDI2/NPC2 12 9 GO:0005766 primary lysosome 18/151 155/19559 2.045464e-16 5.909119e-15 4.019158e-15 ANXA2/SERPINB3/FABP5/PIGR/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/LAMP1/LAMP2/GDI2/ACTR2/NPC2/DEFA3 18
10 GO:0031012 extracellular matrix 17/152 113/2939 4.73687248813062e-05 0.00143685132139962 0.00126316599683483 DSP/DSG1/ANXA2/JUP/PLEC/LMNA/HSPA5/CSTA/GAPDH/EEF2/MYH9/TUBB4B/CTSD/FLNB/SOD1/HSPB1/ATP5A1 17 10 GO:0042582 azurophil granule 18/151 155/19559 2.045464e-16 5.909119e-15 4.019158e-15 ANXA2/SERPINB3/FABP5/PIGR/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/LAMP1/LAMP2/GDI2/ACTR2/NPC2/DEFA3 18
11 GO:0005882 intermediate filament 7/152 21/2939 5.43339859285434e-05 0.00148331781584923 0.00130401566228504 DSP/KRT6A/JUP/KRT17/KRT6B/LMNA/KRT15 7 11 GO:0005882 intermediate filament 20/151 215/19559 3.218218e-16 7.962688e-15 5.415918e-15 DSP/KRT6A/KRT16/JUP/KRT78/KRT17/CASP14/PLEC/KRT80/KRT13/KRT6B/LMNA/EPPK1/KRT23/KRT15/FLG/KRT1/KRT2/KRT10/KRT85 20
12 GO:0035578 azurophil granule lumen 9/152 39/2939 0.000116381481601412 0.00288837677065322 0.00253923232584899 ANXA2/SERPINB3/FABP5/TUBB4B/LYZ/SERPINA3/AGA/GDI2/NPC2 9 12 GO:0035578 azurophil granule lumen 15/151 91/19559 3.368830e-16 7.962688e-15 5.415918e-15 ANXA2/SERPINB3/FABP5/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/GDI2/ACTR2/NPC2/DEFA3 15
13 GO:0045111 intermediate filament cytoskeleton 8/152 32/2939 0.000154925405587284 0.00352455297711071 0.00309850811174568 DSP/KRT6A/JUP/KRT17/PLEC/KRT6B/LMNA/KRT15 8 13 GO:0030055 cell-substrate junction 25/151 423/19559 2.257120e-15 4.890426e-14 3.326282e-14 JUP/ACTG1/PLEC/ANXA1/HSPA5/CAT/S100A7/HSPA1A/HSPA1B/MYH9/ACTN4/FLNB/HSPB1/HSPA8/EPPK1/PPIA/YWHAZ/CAPN1/VCL/YWHAE/GSN/PPIB/RPS3/GDI2/ACTR2 25
14 GO:1904813 ficolin-1-rich granule lumen 10/152 53/2939 0.000289825905131926 0.00573615147717977 0.00504277052938881 JUP/CAT/EEF2/CTSD/GSTP1/ALDOA/CAPN1/VCL/GSN/PNP 10 14 GO:0045111 intermediate filament cytoskeleton 20/151 251/19559 6.453595e-15 1.290719e-13 8.778979e-14 DSP/KRT6A/KRT16/JUP/KRT78/KRT17/CASP14/PLEC/KRT80/KRT13/KRT6B/LMNA/EPPK1/KRT23/KRT15/FLG/KRT1/KRT2/KRT10/KRT85 20
15 GO:0005775 vacuolar lumen 11/152 63/2939 0.000294161614214347 0.00573615147717977 0.00504277052938881 ANXA2/SERPINB3/FABP5/TUBB4B/LYZ/CTSD/SERPINA3/AGA/LAMP2/GDI2/NPC2 11 15 GO:0005925 focal adhesion 24/151 415/19559 1.398172e-14 2.596606e-13 1.766112e-13 JUP/ACTG1/PLEC/ANXA1/HSPA5/CAT/S100A7/HSPA1A/HSPA1B/MYH9/ACTN4/FLNB/HSPB1/HSPA8/PPIA/YWHAZ/CAPN1/VCL/YWHAE/GSN/PPIB/RPS3/GDI2/ACTR2 24
16 GO:0001533 cornified envelope 5/152 13/2939 0.000318245371505049 0.00579206576139188 0.00509192594408078 DSP/DSG1/JUP/ANXA1/CSTA 5 16 GO:0070820 tertiary granule 16/151 164/19559 1.643373e-13 2.848514e-12 1.937451e-12 DSP/DSG1/LTF/SERPINB12/LYZ/CTSD/GGH/ALDOA/HBB/HP/ORM1/CSTB/ALDOC/LAMP1/LAMP2/FLG2 16
17 GO:0044433 cytoplasmic vesicle part 32/152 338/2939 0.000357212587465447 0.00590003159894176 0.00518684096610265 DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/ANXA1/CAT/SFN/EEF2/TUBB4B/LYZ/CTSD/UBA52/DMBT1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2 32 17 GO:1904724 tertiary granule lumen 11/151 55/19559 3.591112e-13 5.835556e-12 3.969123e-12 LTF/LYZ/CTSD/GGH/ALDOA/HBB/HP/ORM1/CSTB/ALDOC/FLG2 11
18 GO:0035580 specific granule lumen 6/152 20/2939 0.000367401235098937 0.00590003159894176 0.00518684096610265 JUP/LTF/LYZ/CTSD/VCL/LCN2 6 18 GO:0042470 melanosome 13/151 105/19559 1.556349e-12 2.248059e-11 1.529044e-11 ANXA2/HSPA5/PRDX1/HSP90AA1/CTSD/HSPA8/YWHAZ/GGH/YWHAE/CTSB/LAMP1/PPIB/CAPG 13
19 GO:0048770 pigment granule 13/151 105/19559 1.556349e-12 2.248059e-11 1.529044e-11 ANXA2/HSPA5/PRDX1/HSP90AA1/CTSD/HSPA8/YWHAZ/GGH/YWHAE/CTSB/LAMP1/PPIB/CAPG 13
20 GO:0035580 specific granule lumen 10/151 62/19559 4.246476e-11 5.810967e-10 3.952398e-10 JUP/LTF/ARG1/LYZ/CTSD/GGH/VCL/HP/ORM1/LCN2 10
21 GO:0072562 blood microparticle 13/151 148/19559 1.281364e-10 1.665773e-09 1.132995e-09 ALB/ACTG1/TF/HSPA1A/HSPA1B/HSPA8/YWHAZ/HBB/HP/SERPINA3/ORM1/GSN/KRT1 13
22 GO:0045095 keratin filament 10/151 95/19559 3.212635e-09 3.977548e-08 2.705377e-08 KRT6A/KRT78/CASP14/KRT80/KRT13/KRT6B/EPPK1/KRT1/KRT2/KRT85 10
23 GO:0030057 desmosome 6/151 25/19559 3.006653e-08 3.553317e-07 2.416831e-07 DSP/DSG1/JUP/POF1B/DSC3/PERP 6
24 GO:0062023 collagen-containing extracellular matrix 16/151 427/19559 2.089490e-07 2.362033e-06 1.606565e-06 ANXA2/AZGP1/HRNR/ANXA1/S100A7/SERPINB12/PKM/SERPINA1/CTSD/SERPINA3/ORM1/SERPINB1/CSTB/FLG/CTSB/KRT1 16
25 GO:0042581 specific granule 10/151 160/19559 4.717165e-07 5.110262e-06 3.475806e-06 JUP/LTF/ARG1/LYZ/CTSD/GGH/VCL/HP/ORM1/LCN2 10
26 GO:0043202 lysosomal lumen 8/151 96/19559 7.824361e-07 8.137336e-06 5.534706e-06 HSP90AA1/CTSD/HSPA8/CTSV/SERPINB13/CTSB/LAMP2/NPC2 8
27 GO:0030139 endocytic vesicle 12/151 313/19559 5.891879e-06 5.891879e-05 4.007432e-05 LTF/ACTG1/TF/HSP90AA1/UBA52/DMBT1/FLNB/HBB/HP/GSN/LAMP1/LAMP2 12
28 GO:0008180 COP9 signalosome 5/151 36/19559 7.976238e-06 7.680822e-05 5.224203e-05 HSPA5/HSPA1A/HSPA1B/MYH9/ATP5F1A 5
29 GO:0030016 myofibril 10/151 227/19559 1.094294e-05 1.016130e-04 6.911330e-05 JUP/ACTG1/ENO1/PLEC/ACTN4/FLNB/HSPB1/ALDOA/VCL/CAPZB 10
30 GO:0031093 platelet alpha granule lumen 6/151 67/19559 1.297451e-05 1.163232e-04 7.911861e-05 ALB/SERPINA1/ACTN4/ALDOA/SERPINA3/ORM1 6
31 GO:0071682 endocytic vesicle lumen 4/151 20/19559 1.502135e-05 1.301850e-04 8.854689e-05 LTF/HSP90AA1/HBB/HP 4
32 GO:0043292 contractile fiber 10/151 238/19559 1.649747e-05 1.383658e-04 9.411118e-05 JUP/ACTG1/ENO1/PLEC/ACTN4/FLNB/HSPB1/ALDOA/VCL/CAPZB 10
33 GO:0005911 cell-cell junction 14/151 493/19559 2.934284e-05 2.384106e-04 1.621578e-04 DSP/DSG1/ANXA2/JUP/ACTG1/ANXA1/MYH9/POF1B/ACTN4/EPPK1/DSC3/VCL/PERP/S100A11 14
34 GO:0005916 fascia adherens 3/151 10/19559 5.202062e-05 4.098595e-04 2.787708e-04 DSP/JUP/VCL 3
35 GO:0031091 platelet alpha granule 6/151 91/19559 7.444206e-05 5.692628e-04 3.871909e-04 ALB/SERPINA1/ACTN4/ALDOA/SERPINA3/ORM1 6
36 GO:0101003 ficolin-1-rich granule membrane 5/151 61/19559 1.077869e-04 7.828748e-04 5.324816e-04 DSP/DSG1/SERPINB12/LAMP1/LAMP2 5
37 GO:0045335 phagocytic vesicle 7/151 140/19559 1.083980e-04 7.828748e-04 5.324816e-04 LTF/ACTG1/DMBT1/FLNB/GSN/LAMP1/LAMP2 7
38 GO:0005912 adherens junction 7/151 166/19559 3.098190e-04 2.177106e-03 1.480785e-03 ANXA2/JUP/ANXA1/MYH9/POF1B/VCL/S100A11 7
39 GO:0030017 sarcomere 7/151 207/19559 1.147177e-03 7.849107e-03 5.338664e-03 JUP/ENO1/ACTN4/FLNB/HSPB1/ALDOA/CAPZB 7
40 GO:0002102 podosome 3/151 29/19559 1.422502e-03 9.280979e-03 6.312568e-03 VCL/GSN/ACTR2 3
41 GO:0000502 proteasome complex 4/151 63/19559 1.427843e-03 9.280979e-03 6.312568e-03 HSPB1/IDE/PSMA3/PSMB3 4