diff test-data/cluster_profiler_EGO_CC.csv @ 13:f6107b8ae8f8 draft default tip

"planemo upload commit be9070db4a3b178ab45ecd9c9c3ab369240f7617-dirty"
author proteore
date Fri, 09 Apr 2021 14:39:05 +0000
parents 4609346d8108
children
line wrap: on
line diff
--- a/test-data/cluster_profiler_EGO_CC.csv	Fri Jan 24 05:12:09 2020 -0500
+++ b/test-data/cluster_profiler_EGO_CC.csv	Fri Apr 09 14:39:05 2021 +0000
@@ -1,18 +1,41 @@
 ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	geneID	Count
-GO:0034774	secretory granule lumen	22/152	111/2939	2.07482731603193e-08	3.16370874431657e-06	2.781282412586e-06	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2	22
-GO:0031983	vesicle lumen	22/152	114/2939	3.4766030157325e-08	3.16370874431657e-06	2.781282412586e-06	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2	22
-GO:0060205	cytoplasmic vesicle lumen	22/152	114/2939	3.4766030157325e-08	3.16370874431657e-06	2.781282412586e-06	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/CAT/EEF2/TUBB4B/LYZ/CTSD/GSTP1/ALDOA/VCL/SERPINA3/LCN2/GSN/AGA/PNP/S100A11/GDI2/NPC2	22
-GO:0030141	secretory granule	30/152	232/2939	1.22925605779538e-06	8.38967259445349e-05	7.3755363467723e-05	DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/CAT/EEF2/TUBB4B/LYZ/CTSD/DMBT1/SOD1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2	30
-GO:0099503	secretory vesicle	30/152	251/2939	6.60174269183974e-06	0.00036045515097445	0.000316883649208308	DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/CAT/EEF2/TUBB4B/LYZ/CTSD/DMBT1/SOD1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2	30
-GO:0101002	ficolin-1-rich granule	14/152	72/2939	1.18733421290438e-05	0.000540237066871494	0.000474933685161753	DSP/DSG1/JUP/CAT/EEF2/CTSD/GSTP1/ALDOA/CAPN1/VCL/GSN/PNP/LAMP1/LAMP2	14
-GO:0005766	primary lysosome	12/152	61/2939	4.56978270565284e-05	0.00143685132139962	0.00126316599683483	ANXA2/SERPINB3/FABP5/PIGR/TUBB4B/LYZ/SERPINA3/AGA/LAMP1/LAMP2/GDI2/NPC2	12
-GO:0042582	azurophil granule	12/152	61/2939	4.56978270565284e-05	0.00143685132139962	0.00126316599683483	ANXA2/SERPINB3/FABP5/PIGR/TUBB4B/LYZ/SERPINA3/AGA/LAMP1/LAMP2/GDI2/NPC2	12
-GO:0031012	extracellular matrix	17/152	113/2939	4.73687248813062e-05	0.00143685132139962	0.00126316599683483	DSP/DSG1/ANXA2/JUP/PLEC/LMNA/HSPA5/CSTA/GAPDH/EEF2/MYH9/TUBB4B/CTSD/FLNB/SOD1/HSPB1/ATP5A1	17
-GO:0005882	intermediate filament	7/152	21/2939	5.43339859285434e-05	0.00148331781584923	0.00130401566228504	DSP/KRT6A/JUP/KRT17/KRT6B/LMNA/KRT15	7
-GO:0035578	azurophil granule lumen	9/152	39/2939	0.000116381481601412	0.00288837677065322	0.00253923232584899	ANXA2/SERPINB3/FABP5/TUBB4B/LYZ/SERPINA3/AGA/GDI2/NPC2	9
-GO:0045111	intermediate filament cytoskeleton	8/152	32/2939	0.000154925405587284	0.00352455297711071	0.00309850811174568	DSP/KRT6A/JUP/KRT17/PLEC/KRT6B/LMNA/KRT15	8
-GO:1904813	ficolin-1-rich granule lumen	10/152	53/2939	0.000289825905131926	0.00573615147717977	0.00504277052938881	JUP/CAT/EEF2/CTSD/GSTP1/ALDOA/CAPN1/VCL/GSN/PNP	10
-GO:0005775	vacuolar lumen	11/152	63/2939	0.000294161614214347	0.00573615147717977	0.00504277052938881	ANXA2/SERPINB3/FABP5/TUBB4B/LYZ/CTSD/SERPINA3/AGA/LAMP2/GDI2/NPC2	11
-GO:0001533	cornified envelope	5/152	13/2939	0.000318245371505049	0.00579206576139188	0.00509192594408078	DSP/DSG1/JUP/ANXA1/CSTA	5
-GO:0044433	cytoplasmic vesicle part	32/152	338/2939	0.000357212587465447	0.00590003159894176	0.00518684096610265	DSP/ALB/DSG1/ANXA2/JUP/LTF/SERPINB3/FABP5/PIGR/ANXA1/CAT/SFN/EEF2/TUBB4B/LYZ/CTSD/UBA52/DMBT1/GSTP1/ALDOA/CAPN1/VCL/SERPINA3/LCN2/GSN/AGA/PNP/LAMP1/LAMP2/S100A11/GDI2/NPC2	32
-GO:0035580	specific granule lumen	6/152	20/2939	0.000367401235098937	0.00590003159894176	0.00518684096610265	JUP/LTF/LYZ/CTSD/VCL/LCN2	6
+GO:0034774	secretory granule lumen	40/151	322/19559	4.698082e-37	8.644911e-35	5.879940e-35	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3	40
+GO:0060205	cytoplasmic vesicle lumen	40/151	326/19559	7.774260e-37	8.644911e-35	5.879940e-35	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3	40
+GO:0031983	vesicle lumen	40/151	328/19559	9.974897e-37	8.644911e-35	5.879940e-35	ALB/ANXA2/JUP/LTF/SERPINB3/FABP5/HRNR/TF/CAT/S100A7/PKM/ARG1/EEF2/TUBB4B/LYZ/SERPINA1/HSP90AA1/ACTN4/CTSD/HSPA8/PPIA/GGH/GSTP1/ALDOA/VCL/HP/SERPINA3/ORM1/SERPINB1/LCN2/GSN/AGA/PNP/CSTB/ALDOC/S100A11/GDI2/ACTR2/NPC2/DEFA3	40
+GO:0101002	ficolin-1-rich granule	24/151	124/19559	4.106422e-27	2.135340e-25	1.452377e-25	JUP/CAT/PKM/HSPA1A/HSPA1B/EEF2/SERPINA1/HSP90AA1/CTSD/HSPA8/PPIA/GSTP1/ALDOA/CAPN1/VCL/HBB/GSN/PNP/CSTB/ALDOC/CTSB/ACTR2/CALML5/KRT1	24
+GO:1904813	ficolin-1-rich granule lumen	24/151	124/19559	4.106422e-27	2.135340e-25	1.452377e-25	JUP/CAT/PKM/HSPA1A/HSPA1B/EEF2/SERPINA1/HSP90AA1/CTSD/HSPA8/PPIA/GSTP1/ALDOA/CAPN1/VCL/HBB/GSN/PNP/CSTB/ALDOC/CTSB/ACTR2/CALML5/KRT1	24
+GO:0001533	cornified envelope	15/151	45/19559	2.864077e-21	1.241100e-19	8.441489e-20	DSP/DSG1/JUP/HRNR/ANXA1/CSTA/DSC3/SPRR1B/CST6/FLG/KRT1/KRT2/KRT10/FLG2/SPRR2E	15
+GO:0005775	vacuolar lumen	22/151	173/19559	9.970096e-21	3.703179e-19	2.518761e-19	ANXA2/SERPINB3/FABP5/HRNR/S100A7/ARG1/TUBB4B/LYZ/HSP90AA1/CTSD/HSPA8/GGH/CTSV/SERPINA3/AGA/SERPINB13/CTSB/LAMP2/GDI2/ACTR2/NPC2/DEFA3	22
+GO:0005766	primary lysosome	18/151	155/19559	2.045464e-16	5.909119e-15	4.019158e-15	ANXA2/SERPINB3/FABP5/PIGR/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/LAMP1/LAMP2/GDI2/ACTR2/NPC2/DEFA3	18
+GO:0042582	azurophil granule	18/151	155/19559	2.045464e-16	5.909119e-15	4.019158e-15	ANXA2/SERPINB3/FABP5/PIGR/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/LAMP1/LAMP2/GDI2/ACTR2/NPC2/DEFA3	18
+GO:0005882	intermediate filament	20/151	215/19559	3.218218e-16	7.962688e-15	5.415918e-15	DSP/KRT6A/KRT16/JUP/KRT78/KRT17/CASP14/PLEC/KRT80/KRT13/KRT6B/LMNA/EPPK1/KRT23/KRT15/FLG/KRT1/KRT2/KRT10/KRT85	20
+GO:0035578	azurophil granule lumen	15/151	91/19559	3.368830e-16	7.962688e-15	5.415918e-15	ANXA2/SERPINB3/FABP5/HRNR/S100A7/ARG1/TUBB4B/LYZ/GGH/SERPINA3/AGA/GDI2/ACTR2/NPC2/DEFA3	15
+GO:0030055	cell-substrate junction	25/151	423/19559	2.257120e-15	4.890426e-14	3.326282e-14	JUP/ACTG1/PLEC/ANXA1/HSPA5/CAT/S100A7/HSPA1A/HSPA1B/MYH9/ACTN4/FLNB/HSPB1/HSPA8/EPPK1/PPIA/YWHAZ/CAPN1/VCL/YWHAE/GSN/PPIB/RPS3/GDI2/ACTR2	25
+GO:0045111	intermediate filament cytoskeleton	20/151	251/19559	6.453595e-15	1.290719e-13	8.778979e-14	DSP/KRT6A/KRT16/JUP/KRT78/KRT17/CASP14/PLEC/KRT80/KRT13/KRT6B/LMNA/EPPK1/KRT23/KRT15/FLG/KRT1/KRT2/KRT10/KRT85	20
+GO:0005925	focal adhesion	24/151	415/19559	1.398172e-14	2.596606e-13	1.766112e-13	JUP/ACTG1/PLEC/ANXA1/HSPA5/CAT/S100A7/HSPA1A/HSPA1B/MYH9/ACTN4/FLNB/HSPB1/HSPA8/PPIA/YWHAZ/CAPN1/VCL/YWHAE/GSN/PPIB/RPS3/GDI2/ACTR2	24
+GO:0070820	tertiary granule	16/151	164/19559	1.643373e-13	2.848514e-12	1.937451e-12	DSP/DSG1/LTF/SERPINB12/LYZ/CTSD/GGH/ALDOA/HBB/HP/ORM1/CSTB/ALDOC/LAMP1/LAMP2/FLG2	16
+GO:1904724	tertiary granule lumen	11/151	55/19559	3.591112e-13	5.835556e-12	3.969123e-12	LTF/LYZ/CTSD/GGH/ALDOA/HBB/HP/ORM1/CSTB/ALDOC/FLG2	11
+GO:0042470	melanosome	13/151	105/19559	1.556349e-12	2.248059e-11	1.529044e-11	ANXA2/HSPA5/PRDX1/HSP90AA1/CTSD/HSPA8/YWHAZ/GGH/YWHAE/CTSB/LAMP1/PPIB/CAPG	13
+GO:0048770	pigment granule	13/151	105/19559	1.556349e-12	2.248059e-11	1.529044e-11	ANXA2/HSPA5/PRDX1/HSP90AA1/CTSD/HSPA8/YWHAZ/GGH/YWHAE/CTSB/LAMP1/PPIB/CAPG	13
+GO:0035580	specific granule lumen	10/151	62/19559	4.246476e-11	5.810967e-10	3.952398e-10	JUP/LTF/ARG1/LYZ/CTSD/GGH/VCL/HP/ORM1/LCN2	10
+GO:0072562	blood microparticle	13/151	148/19559	1.281364e-10	1.665773e-09	1.132995e-09	ALB/ACTG1/TF/HSPA1A/HSPA1B/HSPA8/YWHAZ/HBB/HP/SERPINA3/ORM1/GSN/KRT1	13
+GO:0045095	keratin filament	10/151	95/19559	3.212635e-09	3.977548e-08	2.705377e-08	KRT6A/KRT78/CASP14/KRT80/KRT13/KRT6B/EPPK1/KRT1/KRT2/KRT85	10
+GO:0030057	desmosome	6/151	25/19559	3.006653e-08	3.553317e-07	2.416831e-07	DSP/DSG1/JUP/POF1B/DSC3/PERP	 6
+GO:0062023	collagen-containing extracellular matrix	16/151	427/19559	2.089490e-07	2.362033e-06	1.606565e-06	ANXA2/AZGP1/HRNR/ANXA1/S100A7/SERPINB12/PKM/SERPINA1/CTSD/SERPINA3/ORM1/SERPINB1/CSTB/FLG/CTSB/KRT1	16
+GO:0042581	specific granule	10/151	160/19559	4.717165e-07	5.110262e-06	3.475806e-06	JUP/LTF/ARG1/LYZ/CTSD/GGH/VCL/HP/ORM1/LCN2	10
+GO:0043202	lysosomal lumen	8/151	96/19559	7.824361e-07	8.137336e-06	5.534706e-06	HSP90AA1/CTSD/HSPA8/CTSV/SERPINB13/CTSB/LAMP2/NPC2	 8
+GO:0030139	endocytic vesicle	12/151	313/19559	5.891879e-06	5.891879e-05	4.007432e-05	LTF/ACTG1/TF/HSP90AA1/UBA52/DMBT1/FLNB/HBB/HP/GSN/LAMP1/LAMP2	12
+GO:0008180	COP9 signalosome	5/151	36/19559	7.976238e-06	7.680822e-05	5.224203e-05	HSPA5/HSPA1A/HSPA1B/MYH9/ATP5F1A	 5
+GO:0030016	myofibril	10/151	227/19559	1.094294e-05	1.016130e-04	6.911330e-05	JUP/ACTG1/ENO1/PLEC/ACTN4/FLNB/HSPB1/ALDOA/VCL/CAPZB	10
+GO:0031093	platelet alpha granule lumen	6/151	67/19559	1.297451e-05	1.163232e-04	7.911861e-05	ALB/SERPINA1/ACTN4/ALDOA/SERPINA3/ORM1	 6
+GO:0071682	endocytic vesicle lumen	4/151	20/19559	1.502135e-05	1.301850e-04	8.854689e-05	LTF/HSP90AA1/HBB/HP	 4
+GO:0043292	contractile fiber	10/151	238/19559	1.649747e-05	1.383658e-04	9.411118e-05	JUP/ACTG1/ENO1/PLEC/ACTN4/FLNB/HSPB1/ALDOA/VCL/CAPZB	10
+GO:0005911	cell-cell junction	14/151	493/19559	2.934284e-05	2.384106e-04	1.621578e-04	DSP/DSG1/ANXA2/JUP/ACTG1/ANXA1/MYH9/POF1B/ACTN4/EPPK1/DSC3/VCL/PERP/S100A11	14
+GO:0005916	fascia adherens	3/151	10/19559	5.202062e-05	4.098595e-04	2.787708e-04	DSP/JUP/VCL	 3
+GO:0031091	platelet alpha granule	6/151	91/19559	7.444206e-05	5.692628e-04	3.871909e-04	ALB/SERPINA1/ACTN4/ALDOA/SERPINA3/ORM1	 6
+GO:0101003	ficolin-1-rich granule membrane	5/151	61/19559	1.077869e-04	7.828748e-04	5.324816e-04	DSP/DSG1/SERPINB12/LAMP1/LAMP2	 5
+GO:0045335	phagocytic vesicle	7/151	140/19559	1.083980e-04	7.828748e-04	5.324816e-04	LTF/ACTG1/DMBT1/FLNB/GSN/LAMP1/LAMP2	 7
+GO:0005912	adherens junction	7/151	166/19559	3.098190e-04	2.177106e-03	1.480785e-03	ANXA2/JUP/ANXA1/MYH9/POF1B/VCL/S100A11	 7
+GO:0030017	sarcomere	7/151	207/19559	1.147177e-03	7.849107e-03	5.338664e-03	JUP/ENO1/ACTN4/FLNB/HSPB1/ALDOA/CAPZB	 7
+GO:0002102	podosome	3/151	29/19559	1.422502e-03	9.280979e-03	6.312568e-03	VCL/GSN/ACTR2	 3
+GO:0000502	proteasome complex	4/151	63/19559	1.427843e-03	9.280979e-03	6.312568e-03	HSPB1/IDE/PSMA3/PSMB3	 4