Mercurial > repos > public-health-bioinformatics > adjust_bracken_for_unclassified_reads
diff test-data/output/SRR17907745_bracken_abundances_adjusted.tsv @ 0:3ab9d37e547e draft
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/adjust_bracken_for_unclassified_reads commit 0d1d1f356cdfd8ef6dbcdd1bfe76c4637587ff53"
| author | public-health-bioinformatics |
|---|---|
| date | Thu, 10 Mar 2022 21:35:14 +0000 |
| parents | |
| children | 87459bd1615a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output/SRR17907745_bracken_abundances_adjusted.tsv Thu Mar 10 21:35:14 2022 +0000 @@ -0,0 +1,432 @@ +name taxonomy_id taxonomy_lvl kraken_assigned_seqs bracken_assigned_seqs total_seqs kraken_fraction_total_seqs bracken_fraction_total_seqs +Klebsiella quasipneumoniae 1463165 S 484958 1017029 2570868 0.188636 0.395598 +Escherichia coli 562 S 181539 751229 2570868 0.070614 0.292208 +Klebsiella pneumoniae 573 S 94362 315713 2570868 0.036704 0.122804 +Citrobacter freundii 546 S 116592 132960 2570868 0.045351 0.051718 +unclassified 0 U 110613 110613 2570868 0.043026 0.043026 +Enterobacter hormaechei 158836 S 74706 85010 2570868 0.029059 0.033067 +Enterobacter cloacae 550 S 73130 79124 2570868 0.028446 0.030777 +Klebsiella variicola 244366 S 4879 10752 2570868 0.001898 0.004182 +Salmonella enterica 28901 S 2559 7803 2570868 0.000995 0.003035 +Klebsiella michiganensis 1134687 S 2076 5659 2570868 0.000808 0.002201 +Salmonella sp. 599 S 431 4942 2570868 0.000168 0.001922 +Citrobacter sp. RHBSTW-00848 2742665 S 253 4822 2570868 0.000098 0.001876 +Klebsiella grimontii 2058152 S 1287 4780 2570868 0.000501 0.001859 +Citrobacter sp. RHBSTW-00107 2742635 S 57 4327 2570868 0.000022 0.001683 +Klebsiella oxytoca 571 S 3014 3775 2570868 0.001172 0.001468 +Klebsiella aerogenes 548 S 3374 3569 2570868 0.001312 0.001388 +Klebsiella sp. LY 2015795 S 544 3569 2570868 0.000212 0.001388 +Klebsiella quasivariicola 2026240 S 2408 2908 2570868 0.000937 0.001131 +Citrobacter sp. RHBSTW-00137 2742638 S 207 2551 2570868 0.000081 0.000992 +Salmonella sp. SSDFZ54 2500542 S 687 2217 2570868 0.000267 0.000862 +Citrobacter sp. RHBSTW-00053 2742632 S 448 2109 2570868 0.000174 0.000820 +Klebsiella africana 2489010 S 1835 2069 2570868 0.000714 0.000805 +Citrobacter sp. RHBSTW-00678 2742661 S 248 1170 2570868 0.000096 0.000455 +Raoultella ornithinolytica 54291 S 893 1091 2570868 0.000347 0.000424 +Homo sapiens 9606 S 807 807 2570868 0.000314 0.000314 +Shigella boydii 621 S 227 805 2570868 0.000088 0.000313 +Klebsiella sp. P1CD1 2267618 S 127 665 2570868 0.000049 0.000259 +Kosakonia radicincitans 283686 S 634 653 2570868 0.000247 0.000254 +Klebsiella huaxiensis 2153354 S 542 573 2570868 0.000211 0.000223 +Klebsiella sp. STW0522-44 2681387 S 442 570 2570868 0.000172 0.000222 +Escherichia fergusonii 564 S 487 518 2570868 0.000189 0.000201 +Klebsiella sp. RHBSTW-00484 2742651 S 1 509 2570868 0.000000 0.000198 +Klebsiella sp. LTGPAF-6F 1905288 S 40 459 2570868 0.000016 0.000179 +Enterobacter roggenkampii 1812935 S 325 365 2570868 0.000126 0.000142 +Klebsiella sp. BDA134-6 2787706 S 168 340 2570868 0.000065 0.000132 +Klebsiella sp. WP3-W18-ESBL-02 2675710 S 56 292 2570868 0.000022 0.000114 +Citrobacter sp. RHBSTW-00821 2742663 S 44 292 2570868 0.000017 0.000114 +Enterobacter sp. E76 2596949 S 202 213 2570868 0.000079 0.000083 +Leclercia sp. 4-9-1-25 2815358 S 181 183 2570868 0.000070 0.000071 +Tatumella sp. TA1 2487345 S 163 164 2570868 0.000063 0.000064 +Shigella sonnei 624 S 3 159 2570868 0.000001 0.000062 +Citrobacter portucalensis 1639133 S 118 140 2570868 0.000046 0.000054 +Candidatus Riesia pediculischaeffi 428411 S 136 136 2570868 0.000053 0.000053 +Kluyvera cryocrescens 580 S 5 133 2570868 0.000002 0.000052 +Raoultella electrica 1259973 S 116 131 2570868 0.000045 0.000051 +Serratia marcescens 615 S 126 131 2570868 0.000049 0.000051 +Enterobacter sp. RFL1396 211595 S 125 125 2570868 0.000049 0.000049 +Klebsiella sp. FDAARGOS_511 2488567 S 12 111 2570868 0.000005 0.000043 +Leclercia adecarboxylata 83655 S 96 108 2570868 0.000037 0.000042 +Raoultella planticola 575 S 97 103 2570868 0.000038 0.000040 +Enterobacter asburiae 61645 S 83 90 2570868 0.000032 0.000035 +Klebsiella sp. WP4-W18-ESBL-05 2675713 S 19 87 2570868 0.000007 0.000034 +Raoultella terrigena 577 S 80 83 2570868 0.000031 0.000032 +Enterobacter mori 539813 S 67 77 2570868 0.000026 0.000030 +Pluralibacter gergoviae 61647 S 69 70 2570868 0.000027 0.000027 +Shigella flexneri 623 S 12 67 2570868 0.000005 0.000026 +Klebsiella sp. WP8-S18-ESBL-06 2675726 S 37 63 2570868 0.000014 0.000025 +Enterobacter kobei 208224 S 53 62 2570868 0.000021 0.000024 +Providencia sp. 1709051003 2603246 S 2 57 2570868 0.000001 0.000022 +Hafnia alvei 569 S 53 53 2570868 0.000021 0.000021 +Jejubacter calystegiae 2579935 S 47 47 2570868 0.000018 0.000018 +Proteus mirabilis 584 S 43 44 2570868 0.000017 0.000017 +Edwardsiella piscicida 1263550 S 30 42 2570868 0.000012 0.000016 +Sphingobium sp. PAMC28499 2565554 S 42 42 2570868 0.000016 0.000016 +Citrobacter rodentium 67825 S 28 39 2570868 0.000011 0.000015 +Rahnella sp. WMR42 657334 S 39 39 2570868 0.000015 0.000015 +Shigella dysenteriae 622 S 4 36 2570868 0.000002 0.000014 +Kosakonia sp. SMBL-WEM22 2725560 S 33 33 2570868 0.000013 0.000013 +Cronobacter sakazakii 28141 S 26 33 2570868 0.000010 0.000013 +Citrobacter sp. RHBSTW-01013 2742677 S 16 30 2570868 0.000006 0.000012 +Erwinia sp. Ejp617 215689 S 32 32 2570868 0.000012 0.000012 +Pantoea ananatis 553 S 30 30 2570868 0.000012 0.000012 +Staphylococcus aureus 1280 S 26 27 2570868 0.000010 0.000011 +Rhodopseudomonas palustris 1076 S 25 25 2570868 0.000010 0.000010 +Klebsiella sp. MPUS7 2697371 S 4 22 2570868 0.000002 0.000009 +Salmonella bongori 54736 S 4 24 2570868 0.000002 0.000009 +Kosakonia oryzae 497725 S 23 23 2570868 0.000009 0.000009 +Yersinia pestis 632 S 7 23 2570868 0.000003 0.000009 +Pectobacterium versatile 2488639 S 19 22 2570868 0.000007 0.000009 +Enterobacter cloacae complex sp. 2027919 S 10 20 2570868 0.000004 0.000008 +Citrobacter sp. LY-1 2546350 S 21 21 2570868 0.000008 0.000008 +Salmonella sp. SJTUF14178 2745895 S 1 21 2570868 0.000000 0.000008 +Erwinia amylovora 552 S 18 20 2570868 0.000007 0.000008 +Yersinia kristensenii 28152 S 20 21 2570868 0.000008 0.000008 +Metakosakonia sp. MRY16-398 2487150 S 11 17 2570868 0.000004 0.000007 +Yersinia pseudotuberculosis 633 S 17 17 2570868 0.000007 0.000007 +Klebsiella sp. WP3-S18-ESBL-05 2675711 S 2 15 2570868 0.000001 0.000006 +Acinetobacter baumannii 470 S 10 15 2570868 0.000004 0.000006 +Escherichia albertii 208962 S 12 14 2570868 0.000005 0.000005 +Enterobacter sp. 18A13 2565914 S 13 14 2570868 0.000005 0.000005 +Enterobacter sp. R4-368 1166130 S 11 13 2570868 0.000004 0.000005 +Cedecea neteri 158822 S 13 14 2570868 0.000005 0.000005 +Erwinia pyrifoliae 79967 S 7 13 2570868 0.000003 0.000005 +Pantoea stewartii 66269 S 13 13 2570868 0.000005 0.000005 +Escherichia sp. SCLE84 2725997 S 1 11 2570868 0.000000 0.000004 +Enterobacter sp. SA187 1914861 S 11 11 2570868 0.000004 0.000004 +Lelliottia amnigena 61646 S 9 9 2570868 0.000004 0.000004 +Erwinia tasmaniensis 338565 S 9 9 2570868 0.000004 0.000004 +Serratia symbiotica 138074 S 9 9 2570868 0.000004 0.000004 +Rahnella aquatilis 34038 S 9 10 2570868 0.000004 0.000004 +Morganella morganii 582 S 10 10 2570868 0.000004 0.000004 +Aeromonas media 651 S 9 9 2570868 0.000004 0.000004 +Escherichia marmotae 1499973 S 8 8 2570868 0.000003 0.000003 +Enterobacter sp. JUb54 2724468 S 7 7 2570868 0.000003 0.000003 +Enterobacter bugandensis 881260 S 7 7 2570868 0.000003 0.000003 +Citrobacter sp. ABFQG 2529121 S 1 7 2570868 0.000000 0.000003 +Kluyvera intermedia 61648 S 7 7 2570868 0.000003 0.000003 +Scandinavium goeteborgense 1851514 S 7 7 2570868 0.000003 0.000003 +Acinetobacter johnsonii 40214 S 7 8 2570868 0.000003 0.000003 +Aeromonas caviae 648 S 7 8 2570868 0.000003 0.000003 +Enterobacter cancerogenus 69218 S 4 4 2570868 0.000002 0.000002 +Enterobacter ludwigii 299767 S 4 4 2570868 0.000002 0.000002 +Enterobacter chengduensis 2494701 S 4 4 2570868 0.000002 0.000002 +Enterobacter sp. RHBSTW-00994 2742676 S 4 4 2570868 0.000002 0.000002 +Enterobacter sp. N18-03635 2500132 S 4 4 2570868 0.000002 0.000002 +Enterobacter soli 885040 S 4 4 2570868 0.000002 0.000002 +Citrobacter freundii complex sp. CFNIH3 2077147 S 1 4 2570868 0.000000 0.000002 +Citrobacter sp. R56 1573676 S 6 6 2570868 0.000002 0.000002 +Citrobacter sp. CRE-46 1703250 S 4 5 2570868 0.000002 0.000002 +Citrobacter sp. RHBSTW-00535 2742654 S 1 4 2570868 0.000000 0.000002 +Citrobacter sp. RHBSTW-00903 2742670 S 1 4 2570868 0.000000 0.000002 +Citrobacter koseri 545 S 4 4 2570868 0.000002 0.000002 +Citrobacter amalonaticus 35703 S 4 4 2570868 0.000002 0.000002 +[Enterobacter] lignolyticus 1334193 S 6 6 2570868 0.000002 0.000002 +secondary endosymbiont of Ctenarytaina eucalypti 1199245 S 4 4 2570868 0.000002 0.000002 +Candidatus Doolittlea endobia 1778262 S 5 5 2570868 0.000002 0.000002 +Cedecea lapagei 158823 S 6 6 2570868 0.000002 0.000002 +Kluyvera genomosp. 3 2774055 S 4 4 2570868 0.000002 0.000002 +Lelliottia sp. WB101 2153385 S 4 4 2570868 0.000002 0.000002 +Buttiauxella sp. 3AFRM03 2479367 S 3 4 2570868 0.000001 0.000002 +Shimwellia blattae 563 S 6 6 2570868 0.000002 0.000002 +Phytobacter ursingii 1972431 S 4 4 2570868 0.000002 0.000002 +Tatumella morbirosei 642227 S 4 4 2570868 0.000002 0.000002 +Candidatus Erwinia haradaeae 1922217 S 4 4 2570868 0.000002 0.000002 +Serratia sp. CMO1 2785630 S 3 4 2570868 0.000001 0.000002 +Serratia proteamaculans 28151 S 4 4 2570868 0.000002 0.000002 +Yersinia enterocolitica 630 S 4 4 2570868 0.000002 0.000002 +Yersinia frederiksenii 29484 S 2 4 2570868 0.000001 0.000002 +Providencia rettgeri 587 S 6 6 2570868 0.000002 0.000002 +Providencia heimbachae 333962 S 4 4 2570868 0.000002 0.000002 +Candidatus Sodalis pierantonius 1486991 S 3 4 2570868 0.000001 0.000002 +Pseudomonas aeruginosa 287 S 2 6 2570868 0.000001 0.000002 +Dyella sp. G9 2763498 S 1 4 2570868 0.000000 0.000002 +Nitrosococcus wardiae 1814290 S 4 4 2570868 0.000002 0.000002 +Brachyspira murdochii 84378 S 4 4 2570868 0.000002 0.000002 +Escherichia sp. E4742 2044467 S 2 2 2570868 0.000001 0.000001 +Enterobacter cloacae complex sp. FDA-CDC-AR_0164 2077136 S 1 3 2570868 0.000000 0.000001 +Enterobacter sp. 638 399742 S 3 3 2570868 0.000001 0.000001 +Enterobacter sp. RHB15-C17 2742619 S 3 3 2570868 0.000001 0.000001 +Enterobacter sp. RHBSTW-00175 2742639 S 3 3 2570868 0.000001 0.000001 +Citrobacter braakii 57706 S 2 2 2570868 0.000001 0.000001 +Citrobacter youngae 133448 S 2 2 2570868 0.000001 0.000001 +Citrobacter sp. 36-4CPA 1036018 S 2 2 2570868 0.000001 0.000001 +Citrobacter sp. RHBSTW-00944 2742671 S 2 3 2570868 0.000001 0.000001 +Citrobacter sp. RHBSTW-00881 2742667 S 2 2 2570868 0.000001 0.000001 +Citrobacter sp. Y3 2716879 S 2 3 2570868 0.000001 0.000001 +Citrobacter sp. 172116965 2683822 S 2 2 2570868 0.000001 0.000001 +Citrobacter telavivum 2653932 S 3 3 2570868 0.000001 0.000001 +Raoultella sp. XY-1 2799495 S 1 2 2570868 0.000000 0.000001 +Kosakonia sp. CCTCC M2018092 2492396 S 2 2 2570868 0.000001 0.000001 +Kosakonia cowanii 208223 S 2 2 2570868 0.000001 0.000001 +Kosakonia sacchari 1158459 S 2 2 2570868 0.000001 0.000001 +Leclercia sp. W6 2282310 S 3 3 2570868 0.000001 0.000001 +Leclercia sp. 119287 2681308 S 3 3 2570868 0.000001 0.000001 +Leclercia sp. 29361 2714951 S 3 3 2570868 0.000001 0.000001 +Cronobacter dublinensis 413497 S 3 3 2570868 0.000001 0.000001 +Cronobacter malonaticus 413503 S 3 3 2570868 0.000001 0.000001 +Cronobacter universalis 535744 S 3 3 2570868 0.000001 0.000001 +Cronobacter condimenti 1163710 S 2 2 2570868 0.000001 0.000001 +Candidatus Hamiltonella defensa 138072 S 3 3 2570868 0.000001 0.000001 +Candidatus Hoaglandella endobia 1778263 S 3 3 2570868 0.000001 0.000001 +Candidatus Gullanella endobia 1070130 S 3 3 2570868 0.000001 0.000001 +secondary endosymbiont of Trabutina mannipara 1835721 S 2 2 2570868 0.000001 0.000001 +Candidatus Purcelliella pentastirinorum 472834 S 2 2 2570868 0.000001 0.000001 +Lelliottia nimipressuralis 69220 S 2 2 2570868 0.000001 0.000001 +Enterobacteriaceae endosymbiont of Plateumaris pusilla 2675795 S 1 3 2570868 0.000000 0.000001 +Candidatus Moranella endobia 1048758 S 3 3 2570868 0.000001 0.000001 +Atlantibacter hermannii 565 S 3 3 2570868 0.000001 0.000001 +Pseudescherichia vulneris 566 S 3 3 2570868 0.000001 0.000001 +Yokenella regensburgei 158877 S 2 2 2570868 0.000001 0.000001 +Tatumella ptyseos 82987 S 2 2 2570868 0.000001 0.000001 +Pantoea sp. At-9b 592316 S 2 2 2570868 0.000001 0.000001 +Pantoea sp. MSR2 2052056 S 2 2 2570868 0.000001 0.000001 +Pantoea sp. SO10 2575375 S 2 2 2570868 0.000001 0.000001 +Pantoea vagans 470934 S 3 3 2570868 0.000001 0.000001 +Pantoea agglomerans 549 S 3 3 2570868 0.000001 0.000001 +Buchnera aphidicola 9 S 3 3 2570868 0.000001 0.000001 +Mixta intestinalis 1615494 S 2 2 2570868 0.000001 0.000001 +Serratia sp. FS14 1327989 S 2 2 2570868 0.000001 0.000001 +Serratia liquefaciens 614 S 2 2 2570868 0.000001 0.000001 +Serratia fonticola 47917 S 2 2 2570868 0.000001 0.000001 +Rahnella sp. ERMR1:05 1805933 S 3 3 2570868 0.000001 0.000001 +Rahnella aceris 2703885 S 2 2 2570868 0.000001 0.000001 +Candidatus Fukatsuia symbiotica 1878942 S 3 3 2570868 0.000001 0.000001 +Nissabacter sp. SGAir0207 2126321 S 2 2 2570868 0.000001 0.000001 +Edwardsiella anguillarum 1821960 S 1 3 2570868 0.000000 0.000001 +Obesumbacterium proteus 82983 S 2 2 2570868 0.000001 0.000001 +Proteus vulgaris 585 S 2 3 2570868 0.000001 0.000001 +Xenorhabdus poinarii 40577 S 3 3 2570868 0.000001 0.000001 +Xenorhabdus bovienii 40576 S 2 2 2570868 0.000001 0.000001 +Xenorhabdus doucetiae 351671 S 2 2 2570868 0.000001 0.000001 +Pectobacterium carotovorum 554 S 3 3 2570868 0.000001 0.000001 +Pectobacterium atrosepticum 29471 S 2 2 2570868 0.000001 0.000001 +Pectobacterium parmentieri 1905730 S 2 2 2570868 0.000001 0.000001 +Pectobacterium polaris 2042057 S 2 2 2570868 0.000001 0.000001 +Dickeya paradisiaca 69223 S 3 3 2570868 0.000001 0.000001 +Dickeya zeae 204042 S 3 3 2570868 0.000001 0.000001 +Dickeya dadantii 204038 S 2 2 2570868 0.000001 0.000001 +Acinetobacter sp. 10FS3-1 2563897 S 2 2 2570868 0.000001 0.000001 +Acinetobacter lwoffii 28090 S 2 2 2570868 0.000001 0.000001 +Acinetobacter bereziniae 106648 S 2 2 2570868 0.000001 0.000001 +Moraxella osloensis 34062 S 1 2 2570868 0.000000 0.000001 +Pseudomonas putida 303 S 3 3 2570868 0.000001 0.000001 +Pseudomonas umsongensis 198618 S 2 2 2570868 0.000001 0.000001 +Pseudomonas chlororaphis 587753 S 2 2 2570868 0.000001 0.000001 +Pseudomonas stutzeri 316 S 2 2 2570868 0.000001 0.000001 +Aeromonas sp. ASNIH4 1636609 S 3 3 2570868 0.000001 0.000001 +Aeromonas sp. ASNIH7 1920107 S 1 2 2570868 0.000000 0.000001 +Aeromonas salmonicida 645 S 2 2 2570868 0.000001 0.000001 +Aeromonas hydrophila 644 S 2 2 2570868 0.000001 0.000001 +Aeromonas veronii 654 S 2 2 2570868 0.000001 0.000001 +Vibrio cholerae 666 S 3 3 2570868 0.000001 0.000001 +Histophilus somni 731 S 3 3 2570868 0.000001 0.000001 +[Haemophilus] ducreyi 730 S 2 2 2570868 0.000001 0.000001 +Halomonas sp. THAF12 2587849 S 1 2 2570868 0.000000 0.000001 +Halomonas sp. SF2003 2136172 S 1 2 2570868 0.000000 0.000001 +Rhizobium pusense 648995 S 1 2 2570868 0.000000 0.000001 +Ralstonia solanacearum 305 S 1 2 2570868 0.000000 0.000001 +Geobacter sulfurreducens 35554 S 3 3 2570868 0.000001 0.000001 +Staphylococcus cohnii 29382 S 2 2 2570868 0.000001 0.000001 +Bacillus dafuensis 1742359 S 1 2 2570868 0.000000 0.000001 +Streptomyces sp. ICC1 2099583 S 1 2 2570868 0.000000 0.000001 +Flavobacterium johnsoniae 986 S 1 2 2570868 0.000000 0.000001 +Chryseobacterium gallinarum 1324352 S 1 2 2570868 0.000000 0.000001 +Enterobacter sp. HK169 1868135 S 1 1 2570868 0.000000 0.000000 +Enterobacter sp. RHBSTW-00593 2742656 S 1 1 2570868 0.000000 0.000000 +Enterobacter sp. SES19 2705458 S 1 1 2570868 0.000000 0.000000 +Enterobacter oligotrophicus 2478464 S 1 1 2570868 0.000000 0.000000 +Citrobacter freundii complex sp. CFNIH2 2066049 S 1 1 2570868 0.000000 0.000000 +Citrobacter werkmanii 67827 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. BDA59-3 2781952 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. RHBSTW-00986 2742675 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. CFNIH10 1920110 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. CF971 2566012 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. RHBSTW-00524 2742653 S 1 1 2570868 0.000000 0.000000 +Citrobacter sp. RHB35-C21 2742626 S 1 1 2570868 0.000000 0.000000 +Citrobacter farmeri 67824 S 1 1 2570868 0.000000 0.000000 +Citrobacter cronae 1748967 S 1 1 2570868 0.000000 0.000000 +Raoultella sp. X13 2259647 S 1 1 2570868 0.000000 0.000000 +Kosakonia arachidis 551989 S 1 1 2570868 0.000000 0.000000 +Kosakonia pseudosacchari 1646340 S 1 1 2570868 0.000000 0.000000 +Leclercia sp. LSNIH1 1920114 S 1 1 2570868 0.000000 0.000000 +Leclercia sp. J807 2681307 S 1 1 2570868 0.000000 0.000000 +secondary endosymbiont of Heteropsylla cubana 134287 S 1 1 2570868 0.000000 0.000000 +Enterobacteriaceae endosymbiont of Macroplea appendiculata 2675790 S 1 1 2570868 0.000000 0.000000 +Enterobacteriaceae endosymbiont of Donacia tomentosa 2675787 S 1 1 2570868 0.000000 0.000000 +Buttiauxella agrestis 82977 S 1 1 2570868 0.000000 0.000000 +Erwinia persicina 55211 S 1 1 2570868 0.000000 0.000000 +Pantoea sp. CCBC3-3-1 2490851 S 1 1 2570868 0.000000 0.000000 +Pantoea cypripedii 55209 S 1 1 2570868 0.000000 0.000000 +Pantoea dispersa 59814 S 1 1 2570868 0.000000 0.000000 +Pantoea alhagi 1891675 S 1 1 2570868 0.000000 0.000000 +Mixta theicola 1458355 S 1 1 2570868 0.000000 0.000000 +Serratia sp. Tan611 2773264 S 1 1 2570868 0.000000 0.000000 +Serratia rubidaea 61652 S 1 1 2570868 0.000000 0.000000 +Serratia plymuthica 82996 S 1 1 2570868 0.000000 0.000000 +Serratia quinivorans 137545 S 1 1 2570868 0.000000 0.000000 +Yersinia aleksiciae 263819 S 1 1 2570868 0.000000 0.000000 +Yersinia massiliensis 419257 S 1 1 2570868 0.000000 0.000000 +Yersinia hibernica 2339259 S 1 1 2570868 0.000000 0.000000 +Ewingella americana 41202 S 1 1 2570868 0.000000 0.000000 +Rouxiella badensis 1646377 S 1 1 2570868 0.000000 0.000000 +Hafnia paralvei 546367 S 1 1 2570868 0.000000 0.000000 +Edwardsiella tarda 636 S 1 1 2570868 0.000000 0.000000 +Edwardsiella ictaluri 67780 S 1 1 2570868 0.000000 0.000000 +Edwardsiella hoshinae 93378 S 1 1 2570868 0.000000 0.000000 +Edwardsiella sp. EA181011 1578828 S 1 1 2570868 0.000000 0.000000 +Providencia vermicola 333965 S 1 1 2570868 0.000000 0.000000 +Xenorhabdus nematophila 628 S 1 1 2570868 0.000000 0.000000 +Xenorhabdus budapestensis 290110 S 1 1 2570868 0.000000 0.000000 +Arsenophonus nasoniae 638 S 1 1 2570868 0.000000 0.000000 +Candidatus Arsenophonus lipoptenae 634113 S 1 1 2570868 0.000000 0.000000 +Arsenophonus endosymbiont of Aleurodicus dispersus 235559 S 1 1 2570868 0.000000 0.000000 +Pectobacterium odoriferum 78398 S 1 1 2570868 0.000000 0.000000 +Pectobacterium brasiliense 180957 S 1 1 2570868 0.000000 0.000000 +Dickeya dianthicola 204039 S 1 1 2570868 0.000000 0.000000 +Dickeya fangzhongdai 1778540 S 1 1 2570868 0.000000 0.000000 +Brenneria rubrifaciens 55213 S 1 1 2570868 0.000000 0.000000 +Brenneria goodwinii 1109412 S 1 1 2570868 0.000000 0.000000 +Lonsdalea britannica 1082704 S 1 1 2570868 0.000000 0.000000 +Sodalis endosymbiont of Henestaris halophilus 1929246 S 1 1 2570868 0.000000 0.000000 +Pragia fontium 82985 S 1 1 2570868 0.000000 0.000000 +Jinshanibacter zhutongyuii 2498113 S 1 1 2570868 0.000000 0.000000 +Plesiomonas shigelloides 703 S 1 1 2570868 0.000000 0.000000 +Acinetobacter sp. WCHAc010052 2004647 S 1 1 2570868 0.000000 0.000000 +Acinetobacter sp. WCHA45 2004644 S 1 1 2570868 0.000000 0.000000 +Acinetobacter indicus 756892 S 1 1 2570868 0.000000 0.000000 +Acinetobacter equi 1324350 S 1 1 2570868 0.000000 0.000000 +Acinetobacter towneri 202956 S 1 1 2570868 0.000000 0.000000 +Acinetobacter variabilis 70346 S 1 1 2570868 0.000000 0.000000 +Acinetobacter schindleri 108981 S 1 1 2570868 0.000000 0.000000 +Pseudomonas fulva 47880 S 1 1 2570868 0.000000 0.000000 +Pseudomonas oleovorans 301 S 1 1 2570868 0.000000 0.000000 +Pseudomonas sp. GR 6-02 1659194 S 1 1 2570868 0.000000 0.000000 +Pseudomonas sp. ADPe 2774873 S 1 1 2570868 0.000000 0.000000 +Pseudomonas trivialis 200450 S 1 1 2570868 0.000000 0.000000 +Pseudomonas fluorescens 294 S 1 1 2570868 0.000000 0.000000 +Pseudomonas taetrolens 47884 S 1 1 2570868 0.000000 0.000000 +Pseudomonas prosekii 1148509 S 1 1 2570868 0.000000 0.000000 +Pseudomonas lurida 244566 S 1 1 2570868 0.000000 0.000000 +Oblitimonas alkaliphila 1697053 S 1 1 2570868 0.000000 0.000000 +Stenotrophomonas sp. Pemsol 2040586 S 1 1 2570868 0.000000 0.000000 +Stenotrophomonas sp. 169 2770322 S 1 1 2570868 0.000000 0.000000 +Stenotrophomonas rhizophila 216778 S 1 1 2570868 0.000000 0.000000 +Thermomonas brevis 215691 S 1 1 2570868 0.000000 0.000000 +Thermomonas carbonis 1463158 S 1 1 2570868 0.000000 0.000000 +Xylella fastidiosa 2371 S 1 1 2570868 0.000000 0.000000 +Luteimonas sp. JM171 1896164 S 1 1 2570868 0.000000 0.000000 +Pseudoxanthomonas mexicana 128785 S 1 1 2570868 0.000000 0.000000 +Vibrio vulnificus 672 S 1 1 2570868 0.000000 0.000000 +Vibrio sp. SM1977 2662262 S 1 1 2570868 0.000000 0.000000 +Vibrio owensii 696485 S 1 1 2570868 0.000000 0.000000 +Vibrio rumoiensis 76258 S 1 1 2570868 0.000000 0.000000 +Vibrio tapetis 52443 S 1 1 2570868 0.000000 0.000000 +Vibrio furnissii 29494 S 1 1 2570868 0.000000 0.000000 +Vibrio nigripulchritudo 28173 S 1 1 2570868 0.000000 0.000000 +Glaesserella parasuis 738 S 1 1 2570868 0.000000 0.000000 +Avibacterium paragallinarum 728 S 1 1 2570868 0.000000 0.000000 +Gallibacterium anatis 750 S 1 1 2570868 0.000000 0.000000 +Shewanella sp. MR-7 60481 S 1 1 2570868 0.000000 0.000000 +Shewanella sp. ANA-3 94122 S 1 1 2570868 0.000000 0.000000 +Shewanella baltica 62322 S 1 1 2570868 0.000000 0.000000 +Marinobacter sp. Arc7-DN-1 2304594 S 1 1 2570868 0.000000 0.000000 +Catenovulum sp. CCB-QB4 2172099 S 1 1 2570868 0.000000 0.000000 +Thalassotalea crassostreae 1763536 S 1 1 2570868 0.000000 0.000000 +Ferrimonas lipolytica 2724191 S 1 1 2570868 0.000000 0.000000 +Halomonas sp. GFAJ-1 1118153 S 1 1 2570868 0.000000 0.000000 +Zymobacter palmae 33074 S 1 1 2570868 0.000000 0.000000 +Kushneria marisflavi 157779 S 1 1 2570868 0.000000 0.000000 +Congregibacter litoralis 393662 S 1 1 2570868 0.000000 0.000000 +Spongiibacter sp. IMCC21906 1620392 S 1 1 2570868 0.000000 0.000000 +Methylophaga frappieri 754477 S 1 1 2570868 0.000000 0.000000 +Methylomonas denitrificans 1538553 S 1 1 2570868 0.000000 0.000000 +Sphingomonas sp. C33 2698679 S 1 1 2570868 0.000000 0.000000 +Bradyrhizobium erythrophlei 1437360 S 1 1 2570868 0.000000 0.000000 +Bradyrhizobium canariense 255045 S 1 1 2570868 0.000000 0.000000 +Bosea sp. PAMC 26642 1792307 S 1 1 2570868 0.000000 0.000000 +Bosea sp. Tri-49 1867715 S 1 1 2570868 0.000000 0.000000 +Rhizobium rhizoryzae 451876 S 1 1 2570868 0.000000 0.000000 +Rhizobium leguminosarum 384 S 1 1 2570868 0.000000 0.000000 +Agrobacterium tumefaciens 358 S 1 1 2570868 0.000000 0.000000 +Sinorhizobium fredii 380 S 1 1 2570868 0.000000 0.000000 +Sinorhizobium sp. BG8 2613773 S 1 1 2570868 0.000000 0.000000 +Methylobacterium brachiatum 269660 S 1 1 2570868 0.000000 0.000000 +Methylobacterium sp. 4-46 426117 S 1 1 2570868 0.000000 0.000000 +Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 2493672 S 1 1 2570868 0.000000 0.000000 +Brucella canis 36855 S 1 1 2570868 0.000000 0.000000 +Aureimonas sp. AU20 1349819 S 1 1 2570868 0.000000 0.000000 +Gemmobacter sp. HYN0069 2169400 S 1 1 2570868 0.000000 0.000000 +Sulfitobacter pontiacus 60137 S 1 1 2570868 0.000000 0.000000 +Ruegeria pomeroyi 89184 S 1 1 2570868 0.000000 0.000000 +Phaeobacter inhibens 221822 S 1 1 2570868 0.000000 0.000000 +Rhodospirillum rubrum 1085 S 1 1 2570868 0.000000 0.000000 +Candidatus Nesciobacter abundans 2601668 S 1 1 2570868 0.000000 0.000000 +Burkholderia gladioli 28095 S 1 1 2570868 0.000000 0.000000 +Burkholderia cenocepacia 95486 S 1 1 2570868 0.000000 0.000000 +Burkholderia thailandensis 57975 S 1 1 2570868 0.000000 0.000000 +Cupriavidus metallidurans 119219 S 1 1 2570868 0.000000 0.000000 +Cupriavidus taiwanensis 164546 S 1 1 2570868 0.000000 0.000000 +Paraburkholderia phenoliruptrix 252970 S 1 1 2570868 0.000000 0.000000 +Variovorax paradoxus 34073 S 1 1 2570868 0.000000 0.000000 +Variovorax sp. PBL-E5 434014 S 1 1 2570868 0.000000 0.000000 +Acidovorax sp. 1608163 2478662 S 1 1 2570868 0.000000 0.000000 +Candidatus Symbiobacter mobilis 1436290 S 1 1 2570868 0.000000 0.000000 +Herbaspirillum hiltneri 341045 S 1 1 2570868 0.000000 0.000000 +Herbaspirillum huttiense 863372 S 1 1 2570868 0.000000 0.000000 +Methylibium petroleiphilum 105560 S 1 1 2570868 0.000000 0.000000 +Paucibacter sp. KCTC 42545 1768242 S 1 1 2570868 0.000000 0.000000 +Pigmentiphaga sp. H8 2488560 S 1 1 2570868 0.000000 0.000000 +Sutterella wadsworthensis 40545 S 1 1 2570868 0.000000 0.000000 +Chromobacterium paludis 2605945 S 1 1 2570868 0.000000 0.000000 +Chitinibacter sp. 2T18 2739434 S 1 1 2570868 0.000000 0.000000 +Candidatus Accumulibacter phosphatis 327160 S 1 1 2570868 0.000000 0.000000 +Anaeromyxobacter sp. K 447217 S 1 1 2570868 0.000000 0.000000 +Pseudodesulfovibrio aespoeensis 182210 S 1 1 2570868 0.000000 0.000000 +Desulfobacter hydrogenophilus 2291 S 1 1 2570868 0.000000 0.000000 +Desulfomonile tiedjei 2358 S 1 1 2570868 0.000000 0.000000 +Mammaliicoccus stepanovicii 643214 S 1 1 2570868 0.000000 0.000000 +Geobacillus sp. 47C-IIb 1963026 S 1 1 2570868 0.000000 0.000000 +Anoxybacillus flavithermus 33934 S 1 1 2570868 0.000000 0.000000 +Paenibacillus polymyxa 1406 S 1 1 2570868 0.000000 0.000000 +Lactiplantibacillus plantarum 1590 S 1 1 2570868 0.000000 0.000000 +Ligilactobacillus ruminis 1623 S 1 1 2570868 0.000000 0.000000 +Lactococcus sp. KACC 19320 2592653 S 1 1 2570868 0.000000 0.000000 +Tepidanaerobacter acetatoxydans 499229 S 1 1 2570868 0.000000 0.000000 +Mycobacterium sp. DL592 2675524 S 1 1 2570868 0.000000 0.000000 +Mycolicibacterium anyangense 1431246 S 1 1 2570868 0.000000 0.000000 +Mycolicibacillus koreensis 1069220 S 1 1 2570868 0.000000 0.000000 +Corynebacterium striatum 43770 S 1 1 2570868 0.000000 0.000000 +Rhodococcus erythropolis 1833 S 1 1 2570868 0.000000 0.000000 +Streptomyces sp. So13.3 2136173 S 1 1 2570868 0.000000 0.000000 +Streptomyces sp. NA04227 2742136 S 1 1 2570868 0.000000 0.000000 +Streptomyces sp. CLI2509 1984801 S 1 1 2570868 0.000000 0.000000 +Streptomyces sp. W1SF4 2305220 S 1 1 2570868 0.000000 0.000000 +Kytococcus sedentarius 1276 S 1 1 2570868 0.000000 0.000000 +Brachybacterium sp. P6-10-X1 1903186 S 1 1 2570868 0.000000 0.000000 +Arcanobacterium phocisimile 1302235 S 1 1 2570868 0.000000 0.000000 +Trueperella pyogenes 1661 S 1 1 2570868 0.000000 0.000000 +Bifidobacterium breve 1685 S 1 1 2570868 0.000000 0.000000 +Verrucosispora sp. NA02020 2742132 S 1 1 2570868 0.000000 0.000000 +Nocardioides aromaticivorans 200618 S 1 1 2570868 0.000000 0.000000 +Candidatus Planktophila sulfonica 1884904 S 1 1 2570868 0.000000 0.000000 +Leptolyngbya sp. NIES-3755 1752064 S 1 1 2570868 0.000000 0.000000 +Halomicronema hongdechloris 1209493 S 1 1 2570868 0.000000 0.000000 +Calothrix parasitica 1973486 S 1 1 2570868 0.000000 0.000000 +Capnocytophaga sp. oral taxon 902 2748316 S 1 1 2570868 0.000000 0.000000 +Dokdonia sp. Dokd-P16 2173169 S 1 1 2570868 0.000000 0.000000 +Muricauda lutaonensis 516051 S 1 1 2570868 0.000000 0.000000 +Empedobacter falsenii 343874 S 1 1 2570868 0.000000 0.000000 +Sphingobacterium psychroaquaticum 561061 S 1 1 2570868 0.000000 0.000000 +Mucilaginibacter mali 2740462 S 1 1 2570868 0.000000 0.000000 +Prevotella dentalis 52227 S 1 1 2570868 0.000000 0.000000 +Prevotella sp. oral taxon 299 652716 S 1 1 2570868 0.000000 0.000000 +Chitinophaga pinensis 79329 S 1 1 2570868 0.000000 0.000000 +Gemmatimonas aurantiaca 173480 S 1 1 2570868 0.000000 0.000000 +Salinispira pacifica 1307761 S 1 1 2570868 0.000000 0.000000 +Borrelia miyamotoi 47466 S 1 1 2570868 0.000000 0.000000 +Leptospira santarosai 28183 S 1 1 2570868 0.000000 0.000000 +Gimesia chilikensis 2605989 S 1 1 2570868 0.000000 0.000000 +Tautonia plasticadhaerens 2527974 S 1 1 2570868 0.000000 0.000000 +uncultured bacterium HHV35 558689 S 1 1 2570868 0.000000 0.000000