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| author | public-health-bioinformatics |
|---|---|
| date | Thu, 27 Oct 2022 19:13:25 +0000 |
| parents | 3ab9d37e547e |
| children |
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name taxonomy_id taxonomy_lvl kraken_assigned_reads added_reads new_est_reads fraction_total_reads Klebsiella quasipneumoniae 1463165 S 484958 532071 1017029 0.41339 Klebsiella pneumoniae 573 S 94362 221351 315713 0.12833 Klebsiella variicola 244366 S 4879 5873 10752 0.00437 Klebsiella aerogenes 548 S 3374 195 3569 0.00145 Klebsiella oxytoca 571 S 3014 761 3775 0.00153 Klebsiella quasivariicola 2026240 S 2408 500 2908 0.00118 Klebsiella michiganensis 1134687 S 2076 3583 5659 0.00230 Klebsiella sp. LY 2015795 S 544 3025 3569 0.00145 Klebsiella sp. STW0522-44 2681387 S 442 128 570 0.00023 Klebsiella sp. BDA134-6 2787706 S 168 172 340 0.00014 Klebsiella sp. P1CD1 2267618 S 127 538 665 0.00027 Klebsiella sp. WP3-W18-ESBL-02 2675710 S 56 236 292 0.00012 Klebsiella sp. LTGPAF-6F 1905288 S 40 419 459 0.00019 Klebsiella sp. WP8-S18-ESBL-06 2675726 S 37 26 63 0.00003 Klebsiella sp. WP4-W18-ESBL-05 2675713 S 19 68 87 0.00004 Klebsiella sp. FDAARGOS_511 2488567 S 12 99 111 0.00005 Klebsiella sp. MPUS7 2697371 S 4 18 22 0.00001 Klebsiella sp. WP3-S18-ESBL-05 2675711 S 2 13 15 0.00001 Klebsiella sp. RHBSTW-00484 2742651 S 1 508 509 0.00021 Klebsiella africana 2489010 S 1835 234 2069 0.00084 Klebsiella grimontii 2058152 S 1287 3493 4780 0.00194 Klebsiella huaxiensis 2153354 S 542 31 573 0.00023 Escherichia coli 562 S 181539 569690 751229 0.30535 Escherichia fergusonii 564 S 487 31 518 0.00021 Escherichia albertii 208962 S 12 2 14 0.00001 Escherichia marmotae 1499973 S 8 0 8 0.00000 Escherichia sp. E4742 2044467 S 2 0 2 0.00000 Escherichia sp. SCLE84 2725997 S 1 10 11 0.00000 Enterobacter hormaechei 158836 S 74706 10304 85010 0.03455 Enterobacter cloacae 550 S 73130 5994 79124 0.03216 Enterobacter roggenkampii 1812935 S 325 40 365 0.00015 Enterobacter asburiae 61645 S 83 7 90 0.00004 Enterobacter kobei 208224 S 53 9 62 0.00003 Enterobacter cloacae complex sp. 2027919 S 10 10 20 0.00001 Enterobacter cloacae complex sp. FDA-CDC-AR_0164 2077136 S 1 2 3 0.00000 Enterobacter cancerogenus 69218 S 4 0 4 0.00000 Enterobacter ludwigii 299767 S 4 0 4 0.00000 Enterobacter chengduensis 2494701 S 4 0 4 0.00000 Enterobacter sp. E76 2596949 S 202 11 213 0.00009 Enterobacter sp. RFL1396 211595 S 125 0 125 0.00005 Enterobacter sp. 18A13 2565914 S 13 1 14 0.00001 Enterobacter sp. R4-368 1166130 S 11 2 13 0.00001 Enterobacter sp. SA187 1914861 S 11 0 11 0.00000 Enterobacter sp. JUb54 2724468 S 7 0 7 0.00000 Enterobacter sp. RHBSTW-00994 2742676 S 4 0 4 0.00000 Enterobacter sp. N18-03635 2500132 S 4 0 4 0.00000 Enterobacter sp. 638 399742 S 3 0 3 0.00000 Enterobacter sp. RHB15-C17 2742619 S 3 0 3 0.00000 Enterobacter sp. RHBSTW-00175 2742639 S 3 0 3 0.00000 Enterobacter sp. HK169 1868135 S 1 0 1 0.00000 Enterobacter sp. RHBSTW-00593 2742656 S 1 0 1 0.00000 Enterobacter sp. SES19 2705458 S 1 0 1 0.00000 Enterobacter mori 539813 S 67 10 77 0.00003 Enterobacter bugandensis 881260 S 7 0 7 0.00000 Enterobacter soli 885040 S 4 0 4 0.00000 Enterobacter oligotrophicus 2478464 S 1 0 1 0.00000 Citrobacter freundii 546 S 116592 16368 132960 0.05404 Citrobacter portucalensis 1639133 S 118 22 140 0.00006 Citrobacter freundii complex sp. CFNIH2 2066049 S 1 0 1 0.00000 Citrobacter freundii complex sp. CFNIH3 2077147 S 1 3 4 0.00000 Citrobacter sp. ABFQG 2529121 S 1 6 7 0.00000 Citrobacter braakii 57706 S 2 0 2 0.00000 Citrobacter youngae 133448 S 2 0 2 0.00000 Citrobacter werkmanii 67827 S 1 0 1 0.00000 Citrobacter sp. RHBSTW-00053 2742632 S 448 1661 2109 0.00086 Citrobacter sp. RHBSTW-00848 2742665 S 253 4569 4822 0.00196 Citrobacter sp. RHBSTW-00678 2742661 S 248 922 1170 0.00048 Citrobacter sp. RHBSTW-00137 2742638 S 207 2344 2551 0.00104 Citrobacter sp. RHBSTW-00107 2742635 S 57 4270 4327 0.00176 Citrobacter sp. RHBSTW-00821 2742663 S 44 248 292 0.00012 Citrobacter sp. LY-1 2546350 S 21 0 21 0.00001 Citrobacter sp. RHBSTW-01013 2742677 S 16 14 30 0.00001 Citrobacter sp. R56 1573676 S 6 0 6 0.00000 Citrobacter sp. CRE-46 1703250 S 4 1 5 0.00000 Citrobacter sp. 36-4CPA 1036018 S 2 0 2 0.00000 Citrobacter sp. RHBSTW-00944 2742671 S 2 1 3 0.00000 Citrobacter sp. RHBSTW-00881 2742667 S 2 0 2 0.00000 Citrobacter sp. Y3 2716879 S 2 1 3 0.00000 Citrobacter sp. 172116965 2683822 S 2 0 2 0.00000 Citrobacter sp. RHBSTW-00535 2742654 S 1 3 4 0.00000 Citrobacter sp. BDA59-3 2781952 S 1 0 1 0.00000 Citrobacter sp. RHBSTW-00986 2742675 S 1 0 1 0.00000 Citrobacter sp. RHBSTW-00903 2742670 S 1 3 4 0.00000 Citrobacter sp. CFNIH10 1920110 S 1 0 1 0.00000 Citrobacter sp. CF971 2566012 S 1 0 1 0.00000 Citrobacter sp. RHBSTW-00524 2742653 S 1 0 1 0.00000 Citrobacter sp. RHB35-C21 2742626 S 1 0 1 0.00000 Citrobacter rodentium 67825 S 28 11 39 0.00002 Citrobacter koseri 545 S 4 0 4 0.00000 Citrobacter amalonaticus 35703 S 4 0 4 0.00000 Citrobacter telavivum 2653932 S 3 0 3 0.00000 Citrobacter farmeri 67824 S 1 0 1 0.00000 Citrobacter cronae 1748967 S 1 0 1 0.00000 Salmonella enterica 28901 S 2559 5244 7803 0.00317 Salmonella sp. SSDFZ54 2500542 S 687 1530 2217 0.00090 Salmonella sp. 599 S 431 4511 4942 0.00201 Salmonella sp. SJTUF14178 2745895 S 1 20 21 0.00001 Salmonella bongori 54736 S 4 20 24 0.00001 Raoultella ornithinolytica 54291 S 893 198 1091 0.00044 Raoultella electrica 1259973 S 116 15 131 0.00005 Raoultella planticola 575 S 97 6 103 0.00004 Raoultella terrigena 577 S 80 3 83 0.00003 Raoultella sp. X13 2259647 S 1 0 1 0.00000 Raoultella sp. XY-1 2799495 S 1 1 2 0.00000 Kosakonia radicincitans 283686 S 634 19 653 0.00027 Kosakonia sp. SMBL-WEM22 2725560 S 33 0 33 0.00001 Kosakonia sp. CCTCC M2018092 2492396 S 2 0 2 0.00000 Kosakonia oryzae 497725 S 23 0 23 0.00001 Kosakonia cowanii 208223 S 2 0 2 0.00000 Kosakonia sacchari 1158459 S 2 0 2 0.00000 Kosakonia arachidis 551989 S 1 0 1 0.00000 Kosakonia pseudosacchari 1646340 S 1 0 1 0.00000 Leclercia sp. 4-9-1-25 2815358 S 181 2 183 0.00007 Leclercia sp. W6 2282310 S 3 0 3 0.00000 Leclercia sp. 119287 2681308 S 3 0 3 0.00000 Leclercia sp. 29361 2714951 S 3 0 3 0.00000 Leclercia sp. LSNIH1 1920114 S 1 0 1 0.00000 Leclercia sp. J807 2681307 S 1 0 1 0.00000 Leclercia adecarboxylata 83655 S 96 12 108 0.00004 Shigella boydii 621 S 227 578 805 0.00033 Shigella flexneri 623 S 12 55 67 0.00003 Shigella dysenteriae 622 S 4 32 36 0.00001 Shigella sonnei 624 S 3 156 159 0.00006 Candidatus Riesia pediculischaeffi 428411 S 136 0 136 0.00006 Pluralibacter gergoviae 61647 S 69 1 70 0.00003 [Enterobacter] lignolyticus 1334193 S 6 0 6 0.00000 Jejubacter calystegiae 2579935 S 47 0 47 0.00002 Cronobacter sakazakii 28141 S 26 7 33 0.00001 Cronobacter dublinensis 413497 S 3 0 3 0.00000 Cronobacter malonaticus 413503 S 3 0 3 0.00000 Cronobacter universalis 535744 S 3 0 3 0.00000 Cronobacter condimenti 1163710 S 2 0 2 0.00000 secondary endosymbiont of Ctenarytaina eucalypti 1199245 S 4 0 4 0.00000 Candidatus Hamiltonella defensa 138072 S 3 0 3 0.00000 secondary endosymbiont of Heteropsylla cubana 134287 S 1 0 1 0.00000 Candidatus Doolittlea endobia 1778262 S 5 0 5 0.00000 Candidatus Hoaglandella endobia 1778263 S 3 0 3 0.00000 Candidatus Gullanella endobia 1070130 S 3 0 3 0.00000 secondary endosymbiont of Trabutina mannipara 1835721 S 2 0 2 0.00000 Candidatus Purcelliella pentastirinorum 472834 S 2 0 2 0.00000 Cedecea neteri 158822 S 13 1 14 0.00001 Cedecea lapagei 158823 S 6 0 6 0.00000 Kluyvera intermedia 61648 S 7 0 7 0.00000 Kluyvera cryocrescens 580 S 5 128 133 0.00005 Kluyvera genomosp. 3 2774055 S 4 0 4 0.00000 Lelliottia amnigena 61646 S 9 0 9 0.00000 Lelliottia sp. WB101 2153385 S 4 0 4 0.00000 Lelliottia nimipressuralis 69220 S 2 0 2 0.00000 Metakosakonia sp. MRY16-398 2487150 S 11 6 17 0.00001 Scandinavium goeteborgense 1851514 S 7 0 7 0.00000 Enterobacteriaceae endosymbiont of Plateumaris pusilla 2675795 S 1 2 3 0.00000 Enterobacteriaceae endosymbiont of Macroplea appendiculata 2675790 S 1 0 1 0.00000 Enterobacteriaceae endosymbiont of Donacia tomentosa 2675787 S 1 0 1 0.00000 Buttiauxella sp. 3AFRM03 2479367 S 3 1 4 0.00000 Buttiauxella agrestis 82977 S 1 0 1 0.00000 Shimwellia blattae 563 S 6 0 6 0.00000 Phytobacter ursingii 1972431 S 4 0 4 0.00000 Candidatus Moranella endobia 1048758 S 3 0 3 0.00000 Atlantibacter hermannii 565 S 3 0 3 0.00000 Pseudescherichia vulneris 566 S 3 0 3 0.00000 Yokenella regensburgei 158877 S 2 0 2 0.00000 Tatumella sp. TA1 2487345 S 163 1 164 0.00007 Tatumella morbirosei 642227 S 4 0 4 0.00000 Tatumella ptyseos 82987 S 2 0 2 0.00000 Erwinia sp. Ejp617 215689 S 32 0 32 0.00001 Erwinia amylovora 552 S 18 2 20 0.00001 Erwinia tasmaniensis 338565 S 9 0 9 0.00000 Erwinia pyrifoliae 79967 S 7 6 13 0.00001 Candidatus Erwinia haradaeae 1922217 S 4 0 4 0.00000 Erwinia persicina 55211 S 1 0 1 0.00000 Pantoea ananatis 553 S 30 0 30 0.00001 Pantoea stewartii 66269 S 13 0 13 0.00001 Pantoea sp. At-9b 592316 S 2 0 2 0.00000 Pantoea sp. MSR2 2052056 S 2 0 2 0.00000 Pantoea sp. SO10 2575375 S 2 0 2 0.00000 Pantoea sp. CCBC3-3-1 2490851 S 1 0 1 0.00000 Pantoea vagans 470934 S 3 0 3 0.00000 Pantoea agglomerans 549 S 3 0 3 0.00000 Pantoea cypripedii 55209 S 1 0 1 0.00000 Pantoea dispersa 59814 S 1 0 1 0.00000 Pantoea alhagi 1891675 S 1 0 1 0.00000 Buchnera aphidicola 9 S 3 0 3 0.00000 Mixta intestinalis 1615494 S 2 0 2 0.00000 Mixta theicola 1458355 S 1 0 1 0.00000 Serratia marcescens 615 S 126 5 131 0.00005 Serratia symbiotica 138074 S 9 0 9 0.00000 Serratia sp. CMO1 2785630 S 3 1 4 0.00000 Serratia sp. FS14 1327989 S 2 0 2 0.00000 Serratia sp. Tan611 2773264 S 1 0 1 0.00000 Serratia proteamaculans 28151 S 4 0 4 0.00000 Serratia liquefaciens 614 S 2 0 2 0.00000 Serratia fonticola 47917 S 2 0 2 0.00000 Serratia rubidaea 61652 S 1 0 1 0.00000 Serratia plymuthica 82996 S 1 0 1 0.00000 Serratia quinivorans 137545 S 1 0 1 0.00000 Yersinia pseudotuberculosis 633 S 17 0 17 0.00001 Yersinia pestis 632 S 7 16 23 0.00001 Yersinia kristensenii 28152 S 20 1 21 0.00001 Yersinia enterocolitica 630 S 4 0 4 0.00000 Yersinia frederiksenii 29484 S 2 2 4 0.00000 Yersinia aleksiciae 263819 S 1 0 1 0.00000 Yersinia massiliensis 419257 S 1 0 1 0.00000 Yersinia hibernica 2339259 S 1 0 1 0.00000 Rahnella sp. WMR42 657334 S 39 0 39 0.00002 Rahnella sp. ERMR1:05 1805933 S 3 0 3 0.00000 Rahnella aquatilis 34038 S 9 1 10 0.00000 Rahnella aceris 2703885 S 2 0 2 0.00000 Candidatus Fukatsuia symbiotica 1878942 S 3 0 3 0.00000 Nissabacter sp. SGAir0207 2126321 S 2 0 2 0.00000 Ewingella americana 41202 S 1 0 1 0.00000 Rouxiella badensis 1646377 S 1 0 1 0.00000 Hafnia alvei 569 S 53 0 53 0.00002 Hafnia paralvei 546367 S 1 0 1 0.00000 Edwardsiella piscicida 1263550 S 30 12 42 0.00002 Edwardsiella tarda 636 S 1 0 1 0.00000 Edwardsiella ictaluri 67780 S 1 0 1 0.00000 Edwardsiella hoshinae 93378 S 1 0 1 0.00000 Edwardsiella anguillarum 1821960 S 1 2 3 0.00000 Edwardsiella sp. EA181011 1578828 S 1 0 1 0.00000 Obesumbacterium proteus 82983 S 2 0 2 0.00000 Proteus mirabilis 584 S 43 1 44 0.00002 Proteus vulgaris 585 S 2 1 3 0.00000 Providencia rettgeri 587 S 6 0 6 0.00000 Providencia heimbachae 333962 S 4 0 4 0.00000 Providencia sp. 1709051003 2603246 S 2 55 57 0.00002 Providencia vermicola 333965 S 1 0 1 0.00000 Morganella morganii 582 S 10 0 10 0.00000 Xenorhabdus poinarii 40577 S 3 0 3 0.00000 Xenorhabdus bovienii 40576 S 2 0 2 0.00000 Xenorhabdus doucetiae 351671 S 2 0 2 0.00000 Xenorhabdus nematophila 628 S 1 0 1 0.00000 Xenorhabdus budapestensis 290110 S 1 0 1 0.00000 Arsenophonus nasoniae 638 S 1 0 1 0.00000 Candidatus Arsenophonus lipoptenae 634113 S 1 0 1 0.00000 Arsenophonus endosymbiont of Aleurodicus dispersus 235559 S 1 0 1 0.00000 Pectobacterium versatile 2488639 S 19 3 22 0.00001 Pectobacterium carotovorum 554 S 3 0 3 0.00000 Pectobacterium atrosepticum 29471 S 2 0 2 0.00000 Pectobacterium parmentieri 1905730 S 2 0 2 0.00000 Pectobacterium polaris 2042057 S 2 0 2 0.00000 Pectobacterium odoriferum 78398 S 1 0 1 0.00000 Pectobacterium brasiliense 180957 S 1 0 1 0.00000 Dickeya paradisiaca 69223 S 3 0 3 0.00000 Dickeya zeae 204042 S 3 0 3 0.00000 Dickeya dadantii 204038 S 2 0 2 0.00000 Dickeya dianthicola 204039 S 1 0 1 0.00000 Dickeya fangzhongdai 1778540 S 1 0 1 0.00000 Brenneria rubrifaciens 55213 S 1 0 1 0.00000 Brenneria goodwinii 1109412 S 1 0 1 0.00000 Lonsdalea britannica 1082704 S 1 0 1 0.00000 Candidatus Sodalis pierantonius 1486991 S 3 1 4 0.00000 Sodalis endosymbiont of Henestaris halophilus 1929246 S 1 0 1 0.00000 Pragia fontium 82985 S 1 0 1 0.00000 Jinshanibacter zhutongyuii 2498113 S 1 0 1 0.00000 Plesiomonas shigelloides 703 S 1 0 1 0.00000 Acinetobacter baumannii 470 S 10 5 15 0.00001 Acinetobacter johnsonii 40214 S 7 1 8 0.00000 Acinetobacter sp. 10FS3-1 2563897 S 2 0 2 0.00000 Acinetobacter sp. WCHAc010052 2004647 S 1 0 1 0.00000 Acinetobacter sp. WCHA45 2004644 S 1 0 1 0.00000 Acinetobacter lwoffii 28090 S 2 0 2 0.00000 Acinetobacter bereziniae 106648 S 2 0 2 0.00000 Acinetobacter indicus 756892 S 1 0 1 0.00000 Acinetobacter equi 1324350 S 1 0 1 0.00000 Acinetobacter towneri 202956 S 1 0 1 0.00000 Acinetobacter variabilis 70346 S 1 0 1 0.00000 Acinetobacter schindleri 108981 S 1 0 1 0.00000 Moraxella osloensis 34062 S 1 1 2 0.00000 Pseudomonas putida 303 S 3 0 3 0.00000 Pseudomonas fulva 47880 S 1 0 1 0.00000 Pseudomonas aeruginosa 287 S 2 4 6 0.00000 Pseudomonas oleovorans 301 S 1 0 1 0.00000 Pseudomonas umsongensis 198618 S 2 0 2 0.00000 Pseudomonas sp. GR 6-02 1659194 S 1 0 1 0.00000 Pseudomonas sp. ADPe 2774873 S 1 0 1 0.00000 Pseudomonas chlororaphis 587753 S 2 0 2 0.00000 Pseudomonas trivialis 200450 S 1 0 1 0.00000 Pseudomonas fluorescens 294 S 1 0 1 0.00000 Pseudomonas stutzeri 316 S 2 0 2 0.00000 Pseudomonas taetrolens 47884 S 1 0 1 0.00000 Pseudomonas prosekii 1148509 S 1 0 1 0.00000 Pseudomonas lurida 244566 S 1 0 1 0.00000 Oblitimonas alkaliphila 1697053 S 1 0 1 0.00000 Aeromonas media 651 S 9 0 9 0.00000 Aeromonas caviae 648 S 7 1 8 0.00000 Aeromonas sp. ASNIH4 1636609 S 3 0 3 0.00000 Aeromonas sp. ASNIH7 1920107 S 1 1 2 0.00000 Aeromonas salmonicida 645 S 2 0 2 0.00000 Aeromonas hydrophila 644 S 2 0 2 0.00000 Aeromonas veronii 654 S 2 0 2 0.00000 Stenotrophomonas sp. Pemsol 2040586 S 1 0 1 0.00000 Stenotrophomonas sp. 169 2770322 S 1 0 1 0.00000 Stenotrophomonas rhizophila 216778 S 1 0 1 0.00000 Thermomonas brevis 215691 S 1 0 1 0.00000 Thermomonas carbonis 1463158 S 1 0 1 0.00000 Xylella fastidiosa 2371 S 1 0 1 0.00000 Luteimonas sp. JM171 1896164 S 1 0 1 0.00000 Pseudoxanthomonas mexicana 128785 S 1 0 1 0.00000 Dyella sp. G9 2763498 S 1 3 4 0.00000 Vibrio cholerae 666 S 3 0 3 0.00000 Vibrio vulnificus 672 S 1 0 1 0.00000 Vibrio sp. SM1977 2662262 S 1 0 1 0.00000 Vibrio owensii 696485 S 1 0 1 0.00000 Vibrio rumoiensis 76258 S 1 0 1 0.00000 Vibrio tapetis 52443 S 1 0 1 0.00000 Vibrio furnissii 29494 S 1 0 1 0.00000 Vibrio nigripulchritudo 28173 S 1 0 1 0.00000 Histophilus somni 731 S 3 0 3 0.00000 [Haemophilus] ducreyi 730 S 2 0 2 0.00000 Glaesserella parasuis 738 S 1 0 1 0.00000 Avibacterium paragallinarum 728 S 1 0 1 0.00000 Gallibacterium anatis 750 S 1 0 1 0.00000 Shewanella sp. MR-7 60481 S 1 0 1 0.00000 Shewanella sp. ANA-3 94122 S 1 0 1 0.00000 Shewanella baltica 62322 S 1 0 1 0.00000 Marinobacter sp. Arc7-DN-1 2304594 S 1 0 1 0.00000 Catenovulum sp. CCB-QB4 2172099 S 1 0 1 0.00000 Thalassotalea crassostreae 1763536 S 1 0 1 0.00000 Ferrimonas lipolytica 2724191 S 1 0 1 0.00000 Halomonas sp. GFAJ-1 1118153 S 1 0 1 0.00000 Halomonas sp. THAF12 2587849 S 1 1 2 0.00000 Halomonas sp. SF2003 2136172 S 1 1 2 0.00000 Zymobacter palmae 33074 S 1 0 1 0.00000 Kushneria marisflavi 157779 S 1 0 1 0.00000 Nitrosococcus wardiae 1814290 S 4 0 4 0.00000 Congregibacter litoralis 393662 S 1 0 1 0.00000 Spongiibacter sp. IMCC21906 1620392 S 1 0 1 0.00000 Methylophaga frappieri 754477 S 1 0 1 0.00000 Methylomonas denitrificans 1538553 S 1 0 1 0.00000 Sphingobium sp. PAMC28499 2565554 S 42 0 42 0.00002 Sphingomonas sp. C33 2698679 S 1 0 1 0.00000 Rhodopseudomonas palustris 1076 S 25 0 25 0.00001 Bradyrhizobium erythrophlei 1437360 S 1 0 1 0.00000 Bradyrhizobium canariense 255045 S 1 0 1 0.00000 Bosea sp. PAMC 26642 1792307 S 1 0 1 0.00000 Bosea sp. Tri-49 1867715 S 1 0 1 0.00000 Rhizobium rhizoryzae 451876 S 1 0 1 0.00000 Rhizobium pusense 648995 S 1 1 2 0.00000 Rhizobium leguminosarum 384 S 1 0 1 0.00000 Agrobacterium tumefaciens 358 S 1 0 1 0.00000 Sinorhizobium fredii 380 S 1 0 1 0.00000 Sinorhizobium sp. BG8 2613773 S 1 0 1 0.00000 Methylobacterium brachiatum 269660 S 1 0 1 0.00000 Methylobacterium sp. 4-46 426117 S 1 0 1 0.00000 Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 2493672 S 1 0 1 0.00000 Brucella canis 36855 S 1 0 1 0.00000 Aureimonas sp. AU20 1349819 S 1 0 1 0.00000 Gemmobacter sp. HYN0069 2169400 S 1 0 1 0.00000 Sulfitobacter pontiacus 60137 S 1 0 1 0.00000 Ruegeria pomeroyi 89184 S 1 0 1 0.00000 Phaeobacter inhibens 221822 S 1 0 1 0.00000 Rhodospirillum rubrum 1085 S 1 0 1 0.00000 Candidatus Nesciobacter abundans 2601668 S 1 0 1 0.00000 Burkholderia gladioli 28095 S 1 0 1 0.00000 Burkholderia cenocepacia 95486 S 1 0 1 0.00000 Burkholderia thailandensis 57975 S 1 0 1 0.00000 Ralstonia solanacearum 305 S 1 1 2 0.00000 Cupriavidus metallidurans 119219 S 1 0 1 0.00000 Cupriavidus taiwanensis 164546 S 1 0 1 0.00000 Paraburkholderia phenoliruptrix 252970 S 1 0 1 0.00000 Variovorax paradoxus 34073 S 1 0 1 0.00000 Variovorax sp. PBL-E5 434014 S 1 0 1 0.00000 Acidovorax sp. 1608163 2478662 S 1 0 1 0.00000 Candidatus Symbiobacter mobilis 1436290 S 1 0 1 0.00000 Herbaspirillum hiltneri 341045 S 1 0 1 0.00000 Herbaspirillum huttiense 863372 S 1 0 1 0.00000 Methylibium petroleiphilum 105560 S 1 0 1 0.00000 Paucibacter sp. KCTC 42545 1768242 S 1 0 1 0.00000 Pigmentiphaga sp. H8 2488560 S 1 0 1 0.00000 Sutterella wadsworthensis 40545 S 1 0 1 0.00000 Chromobacterium paludis 2605945 S 1 0 1 0.00000 Chitinibacter sp. 2T18 2739434 S 1 0 1 0.00000 Candidatus Accumulibacter phosphatis 327160 S 1 0 1 0.00000 Geobacter sulfurreducens 35554 S 3 0 3 0.00000 Anaeromyxobacter sp. K 447217 S 1 0 1 0.00000 Pseudodesulfovibrio aespoeensis 182210 S 1 0 1 0.00000 Desulfobacter hydrogenophilus 2291 S 1 0 1 0.00000 Desulfomonile tiedjei 2358 S 1 0 1 0.00000 Staphylococcus aureus 1280 S 26 1 27 0.00001 Staphylococcus cohnii 29382 S 2 0 2 0.00000 Mammaliicoccus stepanovicii 643214 S 1 0 1 0.00000 Bacillus dafuensis 1742359 S 1 1 2 0.00000 Geobacillus sp. 47C-IIb 1963026 S 1 0 1 0.00000 Anoxybacillus flavithermus 33934 S 1 0 1 0.00000 Paenibacillus polymyxa 1406 S 1 0 1 0.00000 Lactiplantibacillus plantarum 1590 S 1 0 1 0.00000 Ligilactobacillus ruminis 1623 S 1 0 1 0.00000 Lactococcus sp. KACC 19320 2592653 S 1 0 1 0.00000 Tepidanaerobacter acetatoxydans 499229 S 1 0 1 0.00000 Mycobacterium sp. DL592 2675524 S 1 0 1 0.00000 Mycolicibacterium anyangense 1431246 S 1 0 1 0.00000 Mycolicibacillus koreensis 1069220 S 1 0 1 0.00000 Corynebacterium striatum 43770 S 1 0 1 0.00000 Rhodococcus erythropolis 1833 S 1 0 1 0.00000 Streptomyces sp. So13.3 2136173 S 1 0 1 0.00000 Streptomyces sp. NA04227 2742136 S 1 0 1 0.00000 Streptomyces sp. CLI2509 1984801 S 1 0 1 0.00000 Streptomyces sp. W1SF4 2305220 S 1 0 1 0.00000 Streptomyces sp. ICC1 2099583 S 1 1 2 0.00000 Kytococcus sedentarius 1276 S 1 0 1 0.00000 Brachybacterium sp. P6-10-X1 1903186 S 1 0 1 0.00000 Arcanobacterium phocisimile 1302235 S 1 0 1 0.00000 Trueperella pyogenes 1661 S 1 0 1 0.00000 Bifidobacterium breve 1685 S 1 0 1 0.00000 Verrucosispora sp. NA02020 2742132 S 1 0 1 0.00000 Nocardioides aromaticivorans 200618 S 1 0 1 0.00000 Candidatus Planktophila sulfonica 1884904 S 1 0 1 0.00000 Leptolyngbya sp. NIES-3755 1752064 S 1 0 1 0.00000 Halomicronema hongdechloris 1209493 S 1 0 1 0.00000 Calothrix parasitica 1973486 S 1 0 1 0.00000 Flavobacterium johnsoniae 986 S 1 1 2 0.00000 Capnocytophaga sp. oral taxon 902 2748316 S 1 0 1 0.00000 Dokdonia sp. Dokd-P16 2173169 S 1 0 1 0.00000 Muricauda lutaonensis 516051 S 1 0 1 0.00000 Chryseobacterium gallinarum 1324352 S 1 1 2 0.00000 Empedobacter falsenii 343874 S 1 0 1 0.00000 Sphingobacterium psychroaquaticum 561061 S 1 0 1 0.00000 Mucilaginibacter mali 2740462 S 1 0 1 0.00000 Prevotella dentalis 52227 S 1 0 1 0.00000 Prevotella sp. oral taxon 299 652716 S 1 0 1 0.00000 Chitinophaga pinensis 79329 S 1 0 1 0.00000 Gemmatimonas aurantiaca 173480 S 1 0 1 0.00000 Brachyspira murdochii 84378 S 4 0 4 0.00000 Salinispira pacifica 1307761 S 1 0 1 0.00000 Borrelia miyamotoi 47466 S 1 0 1 0.00000 Leptospira santarosai 28183 S 1 0 1 0.00000 Gimesia chilikensis 2605989 S 1 0 1 0.00000 Tautonia plasticadhaerens 2527974 S 1 0 1 0.00000 uncultured bacterium HHV35 558689 S 1 0 1 0.00000 Homo sapiens 9606 S 807 0 807 0.00033