Mercurial > repos > public-health-bioinformatics > fastp_json_to_tabular
changeset 0:091a2fb2e7ad draft default tip
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/fastp_json_to_tabular commit 888d26702a84c2f8fd1428aff8cd869e94cc0bae"
| author | public-health-bioinformatics |
|---|---|
| date | Thu, 10 Mar 2022 21:59:56 +0000 |
| parents | |
| children | |
| files | fastp_json_to_tabular.py fastp_json_to_tabular.xml test-data/test-01_fastp.json test-data/test-01_fastp.tsv test-data/test-02_fastp.json test-data/test-02_fastp.tsv test-data/test-03_fastp.json test-data/test-03_fastp.tsv |
| diffstat | 8 files changed, 1190 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastp_json_to_tabular.py Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,118 @@ +#!/usr/bin/env python + +import argparse +import json + +def main(args): + with open(args.fastp_json, 'r') as f: + fastp_report = json.load(f) + + reads_single_paired = fastp_report['summary']['sequencing'].split(' ')[0] + + if reads_single_paired == 'paired': + total_read_pairs_before_filtering = str(int(int(fastp_report['summary']['before_filtering']['total_reads']) / 2)) + total_read_pairs_after_filtering = str(int(int(fastp_report['summary']['after_filtering']['total_reads']) / 2)) + read2_mean_length_before_filtering = fastp_report['summary']['before_filtering']['read2_mean_length'] + read2_mean_length_after_filtering = fastp_report['summary']['after_filtering']['read2_mean_length'] + else: + total_read_pairs_before_filtering = 'NA' + total_read_pairs_after_filtering = 'NA' + read2_mean_length_before_filtering = 'NA' + read2_mean_length_after_filtering = 'NA' + + total_reads_before_filtering = fastp_report['summary']['before_filtering']['total_reads'] + total_reads_after_filtering = fastp_report['summary']['after_filtering']['total_reads'] + + total_bases_before_filtering = fastp_report['summary']['before_filtering']['total_bases'] + total_bases_after_filtering = fastp_report['summary']['after_filtering']['total_bases'] + + read1_mean_length_before_filtering = fastp_report['summary']['before_filtering']['read1_mean_length'] + read1_mean_length_after_filtering = fastp_report['summary']['after_filtering']['read1_mean_length'] + + q20_bases_before_filtering = fastp_report['summary']['before_filtering']['q20_bases'] + q20_bases_after_filtering = fastp_report['summary']['after_filtering']['q20_bases'] + + q20_rate_before_filtering = fastp_report['summary']['before_filtering']['q20_rate'] + q20_rate_after_filtering = fastp_report['summary']['after_filtering']['q20_rate'] + + q30_bases_before_filtering = fastp_report['summary']['before_filtering']['q30_bases'] + q30_bases_after_filtering = fastp_report['summary']['after_filtering']['q30_bases'] + + q30_rate_before_filtering = fastp_report['summary']['before_filtering']['q30_rate'] + q30_rate_after_filtering = fastp_report['summary']['after_filtering']['q30_rate'] + + gc_content_before_filtering = fastp_report['summary']['before_filtering']['gc_content'] + gc_content_after_filtering = fastp_report['summary']['after_filtering']['gc_content'] + if 'adapter_cutting' in fastp_report: + adapter_trimmed_reads = fastp_report['adapter_cutting']['adapter_trimmed_reads'] + adapter_trimmed_bases = fastp_report['adapter_cutting']['adapter_trimmed_bases'] + else: + adapter_trimmed_reads = 0 + adapter_trimmed_bases = 0 + + output_fields = [ + 'total_reads_before_filtering', + 'total_read_pairs_before_filtering', + 'total_reads_after_filtering', + 'total_read_pairs_after_filtering', + 'total_bases_before_filtering', + 'total_bases_after_filtering', + 'read1_mean_length_before_filtering', + 'read1_mean_length_after_filtering', + 'read2_mean_length_before_filtering', + 'read2_mean_length_after_filtering', + 'q20_bases_before_filtering', + 'q20_bases_after_filtering', + 'q20_rate_before_filtering', + 'q20_rate_after_filtering', + 'q30_bases_before_filtering', + 'q30_bases_after_filtering', + 'q30_rate_before_filtering', + 'q30_rate_after_filtering', + 'gc_content_before_filtering', + 'gc_content_after_filtering', + 'adapter_trimmed_reads', + 'adapter_trimmed_bases', + ] + + output_data = [] + if args.sample_id: + output_fields = ['sample_id'] + output_fields + output_data = [args.sample_id] + + print(args.delimiter.join(output_fields)) + + output_data = output_data + [ + total_reads_before_filtering, + total_read_pairs_before_filtering, + total_reads_after_filtering, + total_read_pairs_after_filtering, + total_bases_before_filtering, + total_bases_after_filtering, + read1_mean_length_before_filtering, + read1_mean_length_after_filtering, + read2_mean_length_before_filtering, + read2_mean_length_after_filtering, + q20_bases_before_filtering, + q20_bases_after_filtering, + q20_rate_before_filtering, + q20_rate_after_filtering, + q30_bases_before_filtering, + q30_bases_after_filtering, + q30_rate_before_filtering, + q30_rate_after_filtering, + gc_content_before_filtering, + gc_content_after_filtering, + adapter_trimmed_reads, + adapter_trimmed_bases, + ] + print(args.delimiter.join(map(str, output_data))) + + +if __name__ == "__main__": + parser = argparse.ArgumentParser() + parser.add_argument('fastp_json') + parser.add_argument('-s', '--sample-id') + parser.add_argument('-d', '--delimiter', default='\t') + args = parser.parse_args() + main(args)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastp_json_to_tabular.xml Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,33 @@ +<tool id="fastp_json_to_tabular" name="Convert fastp json report to tabular" version="0.1.0"> + <description>Convert fastp json report to tabular</description> + <requirements> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + '$__tool_directory__/fastp_json_to_tabular.py' + ${report} > ${output} + ]]></command> + <inputs> + <param name="report" type="data" format="json" /> + </inputs> + <outputs> + <data name="output" label="fastp report" format="tabular"/> + </outputs> + <tests> + <test> + <param name="report" value="test-01_fastp.json" /> + <output name="output" file="test-01_fastp.tsv" ftype="tabular" /> + </test> + <test> + <param name="report" value="test-02_fastp.json" /> + <output name="output" file="test-02_fastp.tsv" ftype="tabular" /> + </test> + <test> + <param name="report" value="test-03_fastp.json" /> + <output name="output" file="test-03_fastp.tsv" ftype="tabular" /> + </test> + </tests> + <help><![CDATA[ + ]]></help> + <citations> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-01_fastp.json Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,412 @@ +{ + "summary": { + "fastp_version": "0.23.1", + "sequencing": "paired end (251 cycles + 251 cycles)", + "before_filtering": { + "total_reads":784184, + "total_bases":184992455, + "q20_bases":171398822, + "q30_bases":164299769, + "q20_rate":0.926518, + "q30_rate":0.888143, + "read1_mean_length":235, + "read2_mean_length":235, + "gc_content":0.555198 + }, + "after_filtering": { + "total_reads":770852, + "total_bases":175626094, + "q20_bases":164624407, + "q30_bases":158643912, + "q20_rate":0.937357, + "q30_rate":0.903305, + "read1_mean_length":227, + "read2_mean_length":227, + "gc_content":0.554226 + } + }, + "filtering_result": { + "passed_filter_reads": 770852, + "low_quality_reads": 13096, + "too_many_N_reads": 0, + "too_short_reads": 236, + "too_long_reads": 0 + }, + "duplication": { + "rate": 0.00138998 + }, + "insert_size": { + "peak": 244, + "unknown": 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+ }, + "adapter_cutting": { + "adapter_trimmed_reads": 3362, + "adapter_trimmed_bases": 71562, + "read1_adapter_sequence": "unspecified", + "read2_adapter_sequence": "unspecified", + "read1_adapter_counts": {"C":3, "CT":2, "others":143}, + "read2_adapter_counts": {"others":1681} + }, + "read1_before_filtering": { + "total_reads": 392092, + "total_bases": 92489802, + "q20_bases": 84414531, + "q30_bases": 80283953, + "total_cycles": 251, + "quality_curves": { + 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"TCATA":55001, "TCATT":83636, "TCATC":141851, "TCATG":79155, "TCACA":38433, "TCACT":48879, "TCACC":135564, "TCACG":84870, "TCAGA":72500, "TCAGT":58408, "TCAGC":217902, "TCAGG":138336, + "TCTAA":19422, "TCTAT":42339, "TCTAC":37540, "TCTAG":3902, "TCTTA":33927, "TCTTT":104953, "TCTTC":111189, "TCTTG":37798, "TCTCA":47542, "TCTCT":59629, "TCTCC":83381, "TCTCG":60774, "TCTGA":73432, "TCTGT":51271, "TCTGC":132145, "TCTGG":125340, + "TCCAA":22274, "TCCAT":68908, "TCCAC":71297, "TCCAG":144586, "TCCTA":12405, "TCCTT":52130, "TCCTC":58796, "TCCTG":119035, "TCCCA":46539, "TCCCT":47119, "TCCCC":69976, "TCCCG":102426, "TCCGA":43842, "TCCGT":57114, "TCCGC":144347, "TCCGG":141158, + "TCGAA":67955, "TCGAT":112239, "TCGAC":89493, "TCGAG":59248, "TCGTA":42656, "TCGTT":81923, "TCGTC":96237, "TCGTG":60899, "TCGCA":63489, "TCGCT":120053, "TCGCC":232606, "TCGCG":162066, "TCGGA":42253, "TCGGT":91649, "TCGGC":185930, "TCGGG":68502, + "TGAAA":131407, "TGAAT":90338, "TGAAC":98595, "TGAAG":117751, 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"CTATC":75773, "CTATG":43250, "CTACA":35457, "CTACT":29607, "CTACC":53797, "CTACG":59242, "CTAGA":4097, "CTAGT":5110, "CTAGC":8803, "CTAGG":3793, + "CTTAA":56178, "CTTAT":55525, "CTTAC":43769, "CTTAG":20535, "CTTTA":97794, "CTTTT":119012, "CTTTC":101538, "CTTTG":97500, "CTTCA":113047, "CTTCT":74109, "CTTCC":105207, "CTTCG":111928, "CTTGA":51108, "CTTGT":32560, "CTTGC":59045, "CTTGG":26893, + "CTCAA":73776, "CTCAT":61788, "CTCAC":49114, "CTCAG":73373, "CTCTA":28447, "CTCTT":76699, "CTCTC":54285, "CTCTG":64768, "CTCCA":71928, "CTCCT":54814, "CTCCC":54700, "CTCCG":81934, "CTCGA":60356, "CTCGT":40034, "CTCGC":97914, "CTCGG":73004, + "CTGAA":145114, "CTGAT":153271, "CTGAC":122279, "CTGAG":74333, "CTGTA":59109, "CTGTT":109441, "CTGTC":67835, "CTGTG":54221, "CTGCA":139979, "CTGCT":205335, "CTGCC":154035, "CTGCG":197741, "CTGGA":150160, "CTGGT":149171, "CTGGC":274686, "CTGGG":118284, + "CCAAA":70713, "CCAAT":53219, "CCAAC":65001, "CCAAG":26552, "CCATA":65469, "CCATT":83913, "CCATC":130052, "CCATG":80554, "CCACA":56789, "CCACT":54705, "CCACC":129539, "CCACG":104168, "CCAGA":122007, "CCAGT":85792, "CCAGC":323955, "CCAGG":138276, + "CCTAA":19152, "CCTAT":31882, "CCTAC":31102, "CCTAG":3940, "CCTTA":43896, "CCTTT":92325, "CCTTC":94970, "CCTTG":48465, "CCTCA":56319, "CCTCT":50830, "CCTCC":56959, "CCTCG":74200, "CCTGA":138801, "CCTGT":76373, "CCTGC":200639, "CCTGG":140955, + "CCCAA":33887, "CCCAT":62505, "CCCAC":63799, "CCCAG":111011, "CCCTA":20783, "CCCTT":57782, "CCCTC":48950, "CCCTG":115417, "CCCCA":62292, "CCCCT":53561, "CCCCC":62592, "CCCCG":90551, "CCCGA":67591, "CCCGT":64063, "CCCGC":169963, "CCCGG":163602, + "CCGAA":92033, "CCGAT":119978, "CCGAC":107339, "CCGAG":73937, "CCGTA":70028, "CCGTT":111357, "CCGTC":114199, "CCGTG":79660, "CCGCA":142149, "CCGCT":169463, "CCGCC":272453, "CCGCG":219163, "CCGGA":141138, "CCGGT":148929, "CCGGC":257251, "CCGGG":167256, + "CGAAA":110810, "CGAAT":69442, "CGAAC":89934, "CGAAG":114227, "CGATA":144591, "CGATT":98720, "CGATC":126235, "CGATG":161770, "CGACA":87827, "CGACT":56509, "CGACC":106710, "CGACG":153261, "CGAGA":61228, "CGAGT":36617, "CGAGC":102148, "CGAGG":73056, + "CGTAA":72608, "CGTAT":62750, "CGTAC":63871, "CGTAG":56966, "CGTTA":90808, "CGTTT":122165, "CGTTC":96294, "CGTTG":111038, "CGTCA":131402, "CGTCT":73584, "CGTCC":75950, "CGTCG":149714, "CGTGA":86139, "CGTGT":32493, "CGTGC":91829, "CGTGG":106356, + "CGCAA":101077, "CGCAT":108304, "CGCAC":82997, "CGCAG":199918, "CGCTA":86586, "CGCTT":138418, "CGCTC":109224, "CGCTG":332858, "CGCCA":268294, "CGCCT":159889, "CGCCC":163033, "CGCCG":385112, "CGCGA":163784, "CGCGT":125421, "CGCGC":302000, "CGCGG":219023, + "CGGAA":122745, "CGGAT":111020, "CGGAC":70630, "CGGAG":82203, "CGGTA":131930, "CGGTT":111911, "CGGTC":107797, "CGGTG":148985, "CGGCA":224108, "CGGCT":152449, "CGGCC":162363, "CGGCG":387505, "CGGGA":103721, "CGGGT":102307, "CGGGC":166859, "CGGGG":99590, + "GAAAA":168246, "GAAAT":107498, "GAAAC":94054, "GAAAG":105170, "GAATA":91676, "GAATT":63553, "GAATC":69274, "GAATG":73574, "GAACA":90493, "GAACT":66690, "GAACC":72150, "GAACG":99486, "GAAGA":116117, "GAAGT":73034, "GAAGC":127146, "GAAGG":98302, + "GATAA":138732, "GATAT":117292, "GATAC":75221, "GATAG":75418, "GATTA":85256, "GATTT":121397, "GATTC":69341, "GATTG":87210, "GATCA":90436, "GATCT":74977, "GATCC":87012, "GATCG":127605, "GATGA":147256, "GATGT":77850, "GATGC":145310, "GATGG":133812, + "GACAA":65382, "GACAT":55971, "GACAC":32583, "GACAG":68462, "GACTA":28809, "GACTT":46936, "GACTC":35423, "GACTG":56933, "GACCA":93877, "GACCT":63692, "GACCC":58722, "GACCG":109437, "GACGA":99221, "GACGT":78746, "GACGC":143720, "GACGG":118684, + "GAGAA":82452, "GAGAT":76617, "GAGAC":41882, "GAGAG":55765, "GAGTA":40374, "GAGTT":49389, "GAGTC":34379, "GAGTG":39221, "GAGCA":98377, "GAGCT":85829, "GAGCC":73345, "GAGCG":113217, "GAGGA":59850, "GAGGT":55445, "GAGGC":73979, "GAGGG":50588, + "GTAAA":99408, "GTAAT":66679, "GTAAC":49224, "GTAAG":43763, "GTATA":36219, "GTATT":76984, "GTATC":74834, "GTATG":49221, "GTACA":44333, "GTACT":45538, "GTACC":67640, "GTACG":64794, "GTAGA":38423, "GTAGT":36068, "GTAGC":68999, "GTAGG":30404, + "GTTAA":92266, "GTTAT":82223, "GTTAC":48619, "GTTAG":31989, "GTTTA":82400, "GTTTT":144025, "GTTTC":93053, "GTTTG":88201, "GTTCA":97651, "GTTCT":65986, "GTTCC":70483, "GTTCG":89774, "GTTGA":97673, "GTTGT":59324, "GTTGC":86600, "GTTGG":65724, + "GTCAA":67945, "GTCAT":86135, "GTCAC":66719, "GTCAG":119862, "GTCTA":21466, "GTCTT":52608, "GTCTC":41606, "GTCTG":86644, "GTCCA":52884, "GTCCT":39879, "GTCCC":38520, "GTCCG":71733, "GTCGA":89514, "GTCGT":71043, "GTCGC":133794, "GTCGG":106951, + "GTGAA":96404, "GTGAT":100124, "GTGAC":66878, "GTGAG":49472, "GTGTA":29966, "GTGTT":51031, "GTGTC":32283, "GTGTG":29484, "GTGCA":61735, "GTGCT":89811, "GTGCC":74565, "GTGCG":84432, "GTGGA":73890, "GTGGT":98295, "GTGGC":116078, "GTGGG":67646, + "GCAAA":142579, "GCAAT":91122, "GCAAC":87707, "GCAAG":59405, "GCATA":72911, "GCATT":91255, "GCATC":143948, "GCATG":83771, "GCACA":54253, "GCACT":48854, "GCACC":111982, "GCACG":91734, "GCAGA":135207, "GCAGT":79759, "GCAGC":280641, "GCAGG":204430, + "GCTAA":62903, "GCTAT":90269, "GCTAC":71091, "GCTAG":8850, "GCTTA":70600, "GCTTT":147957, "GCTTC":124564, "GCTTG":63221, "GCTCA":109362, "GCTCT":75905, "GCTCC":75580, "GCTCG":99970, "GCTGA":223791, "GCTGT":126854, "GCTGC":281079, "GCTGG":338117, + "GCCAA":104670, "GCCAT":139296, "GCCAC":113117, "GCCAG":270641, "GCCTA":30977, "GCCTT":101934, "GCCTC":73360, "GCCTG":203762, "GCCCA":101392, "GCCCT":80839, "GCCCC":82207, "GCCCG":167632, "GCCGA":189276, "GCCGT":160028, "GCCGC":317938, "GCCGG":263028, + "GCGAA":156008, "GCGAT":196223, "GCGAC":136494, "GCGAG":100200, "GCGTA":101855, "GCGTT":143882, "GCGTC":141128, "GCGTG":120034, "GCGCA":208589, "GCGCT":253394, "GCGCC":290536, "GCGCG":305366, "GCGGA":146412, "GCGGT":166972, "GCGGC":318682, "GCGGG":174197, + "GGAAA":132537, "GGAAT":70642, "GGAAC":71515, "GGAAG":108293, "GGATA":98290, "GGATT":82612, "GGATC":87706, "GGATG":101944, "GGACA":51015, "GGACT":38360, "GGACC":38184, "GGACG":78362, "GGAGA":85380, "GGAGT":45434, "GGAGC":78409, "GGAGG":59380, + "GGTAA":100932, "GGTAT":87950, "GGTAC":66430, "GGTAG":53041, "GGTTA":79306, "GGTTT":120816, "GGTTC":72258, "GGTTG":84495, "GGTCA":118052, "GGTCT":62044, "GGTCC":38320, "GGTCG":107201, "GGTGA":137677, "GGTGT":59980, "GGTGC":112658, "GGTGG":133441, + "GGCAA":144499, "GGCAT":118548, "GGCAC":74346, "GGCAG":155334, "GGCTA":75540, "GGCTT":109022, "GGCTC":71897, "GGCTG":183615, "GGCCA":147931, "GGCCT":106290, "GGCCC":78352, "GGCCG":166336, "GGCGA":240082, "GGCGT":178626, "GGCGC":292692, "GGCGG":279426, + "GGGAA":91370, "GGGAT":90889, "GGGAC":40560, "GGGAG":56522, "GGGTA":66338, "GGGTT":79177, "GGGTC":58650, "GGGTG":77108, "GGGCA":101072, "GGGCT":96157, "GGGCC":79650, "GGGCG":168426, "GGGGA":78306, "GGGGT":57358, "GGGGC":89117, "GGGGG":77584 + }, + "overrepresented_sequences": { + } + }, + "read2_before_filtering": { + "total_reads": 392092, + "total_bases": 92502653, + "q20_bases": 86984291, + "q30_bases": 84015816, + "total_cycles": 251, + "quality_curves": { + 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"CTATT":47472, "CTATC":75627, "CTATG":42223, "CTACA":35049, "CTACT":29191, "CTACC":54065, "CTACG":57864, "CTAGA":3727, "CTAGT":5057, "CTAGC":8606, "CTAGG":3615, + "CTTAA":57121, "CTTAT":56890, "CTTAC":44842, "CTTAG":20531, "CTTTA":99211, "CTTTT":125985, "CTTTC":106554, "CTTTG":98231, "CTTCA":119290, "CTTCT":77853, "CTTCC":110334, "CTTCG":115761, "CTTGA":50384, "CTTGT":33346, "CTTGC":60016, "CTTGG":26754, + "CTCAA":75404, "CTCAT":64351, "CTCAC":50994, "CTCAG":74004, "CTCTA":29219, "CTCTT":82011, "CTCTC":55956, "CTCTG":65578, "CTCCA":76379, "CTCCT":57495, "CTCCC":58200, "CTCCG":84758, "CTCGA":59423, "CTCGT":40335, "CTCGC":100673, "CTCGG":72441, + "CTGAA":143387, "CTGAT":152082, "CTGAC":120838, "CTGAG":73056, "CTGTA":59020, "CTGTT":110127, "CTGTC":69550, "CTGTG":53658, "CTGCA":139846, "CTGCT":206075, "CTGCC":157353, "CTGCG":199517, "CTGGA":142828, "CTGGT":144489, "CTGGC":269428, "CTGGG":114946, + "CCAAA":72997, "CCAAT":54547, "CCAAC":66359, "CCAAG":26479, "CCATA":67868, "CCATT":86600, "CCATC":135152, "CCATG":81701, "CCACA":59734, "CCACT":58091, "CCACC":137479, "CCACG":108334, "CCAGA":124078, "CCAGT":89399, "CCAGC":335655, "CCAGG":139133, + "CCTAA":19831, "CCTAT":31661, "CCTAC":31178, "CCTAG":3872, "CCTTA":45421, "CCTTT":97099, "CCTTC":100568, "CCTTG":49554, "CCTCA":58217, "CCTCT":53438, "CCTCC":61476, "CCTCG":74891, "CCTGA":139385, "CCTGT":78370, "CCTGC":205192, "CCTGG":139347, + "CCCAA":36067, "CCCAT":65771, "CCCAC":68620, "CCCAG":116014, "CCCTA":21397, "CCCTT":62299, "CCCTC":52987, "CCCTG":119438, "CCCCA":68341, "CCCCT":59079, "CCCCC":84969, "CCCCG":99346, "CCCGA":69061, "CCCGT":66313, "CCCGC":178177, "CCCGG":170156, + "CCGAA":91156, "CCGAT":120688, "CCGAC":108542, "CCGAG":73300, "CCGTA":71347, "CCGTT":113864, "CCGTC":119791, "CCGTG":79067, "CCGCA":142268, "CCGCT":171529, "CCGCC":286219, "CCGCG":223471, "CCGGA":141093, "CCGGT":149156, "CCGGC":262041, "CCGGG":169957, + "CGAAA":108674, "CGAAT":69310, "CGAAC":89398, "CGAAG":109930, "CGATA":144889, "CGATT":98116, 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"TGATT":108980, "TGATC":85257, "TGATG":146598, "TGACA":44030, "TGACT":42052, "TGACC":112699, "TGACG":125074, "TGAGA":44938, "TGAGT":41305, "TGAGC":103382, "TGAGG":51902, + "TGTAA":37690, "TGTAT":37269, "TGTAC":41169, "TGTAG":33054, "TGTTA":43940, "TGTTT":89686, "TGTTC":84533, "TGTTG":66872, "TGTCA":44210, "TGTCT":34670, "TGTCC":47080, "TGTCG":83082, "TGTGA":35968, "TGTGT":22254, "TGTGC":50599, "TGTGG":52375, + "TGCAA":51841, "TGCAT":66010, "TGCAC":58704, "TGCAG":130897, "TGCTA":29469, "TGCTT":72455, "TGCTC":92697, "TGCTG":250447, "TGCCA":95435, "TGCCT":63809, "TGCCC":94363, "TGCCG":214419, "TGCGA":60515, "TGCGT":74092, "TGCGC":197857, "TGCGG":132330, + "TGGAA":87683, "TGGAT":82806, "TGGAC":49301, "TGGAG":66614, "TGGTA":56769, "TGGTT":86393, "TGGTC":87645, "TGGTG":126574, "TGGCA":92370, "TGGCT":106070, "TGGCC":139064, "TGGCG":250694, "TGGGA":44087, "TGGGT":56557, "TGGGC":93919, "TGGGG":61065, + "CAAAA":121184, "CAAAT":63421, "CAAAC":84098, "CAAAG":91305, "CAATA":81414, "CAATT":45195, 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"CCACA":56232, "CCACT":55251, "CCACC":128921, "CCACG":102219, "CCAGA":118399, "CCAGT":85477, "CCAGC":320850, "CCAGG":131600, + "CCTAA":18605, "CCTAT":29685, "CCTAC":29395, "CCTAG":3518, "CCTTA":42642, "CCTTT":90464, "CCTTC":95255, "CCTTG":46674, "CCTCA":55123, "CCTCT":49923, "CCTCC":56175, "CCTCG":70421, "CCTGA":133228, "CCTGT":74278, "CCTGC":195744, "CCTGG":131364, + "CCCAA":33161, "CCCAT":61932, "CCCAC":63150, "CCCAG":109492, "CCCTA":19784, "CCCTT":56938, "CCCTC":47965, "CCCTG":112648, "CCCCA":62221, "CCCCT":52889, "CCCCC":60811, "CCCCG":86369, "CCCGA":64796, "CCCGT":61841, "CCCGC":162883, "CCCGG":156107, + "CCGAA":86580, "CCGAT":114992, "CCGAC":102629, "CCGAG":69495, "CCGTA":67592, "CCGTT":108062, "CCGTC":113896, "CCGTG":74867, "CCGCA":134722, "CCGCT":162848, "CCGCC":265573, "CCGCG":209097, "CCGGA":133722, "CCGGT":141254, "CCGGC":246322, "CCGGG":155106, + "CGAAA":103625, "CGAAT":66387, "CGAAC":85473, "CGAAG":105131, "CGATA":138342, "CGATT":93778, "CGATC":121354, "CGATG":149609, "CGACA":83720, "CGACT":54489, "CGACC":102717, "CGACG":142608, "CGAGA":56591, "CGAGT":34385, "CGAGC":94699, "CGAGG":68227, + "CGTAA":68610, "CGTAT":58936, "CGTAC":61197, "CGTAG":55270, "CGTTA":86356, "CGTTT":117107, "CGTTC":94188, "CGTTG":106068, "CGTCA":128209, "CGTCT":71821, "CGTCC":74220, "CGTCG":145058, "CGTGA":80404, "CGTGT":30727, "CGTGC":85582, "CGTGG":96362, + "CGCAA":96037, "CGCAT":104131, "CGCAC":80122, "CGCAG":185607, "CGCTA":81675, "CGCTT":134877, "CGCTC":106955, "CGCTG":312167, "CGCCA":261529, "CGCCT":156098, "CGCCC":161075, "CGCCG":370115, "CGCGA":154686, "CGCGT":119056, "CGCGC":289121, "CGCGG":205295, + "CGGAA":114918, "CGGAT":105048, "CGGAC":67087, "CGGAG":74567, "CGGTA":124063, "CGGTT":105772, "CGGTC":102259, "CGGTG":135338, "CGGCA":212061, "CGGCT":144190, "CGGCC":155368, "CGGCG":357820, "CGGGA":94785, "CGGGT":95894, "CGGGC":153935, "CGGGG":89968, + "GAAAA":155620, "GAAAT":100391, "GAAAC":88488, "GAAAG":94952, "GAATA":86543, "GAATT":59848, "GAATC":66472, "GAATG":69031, "GAACA":84513, "GAACT":62811, "GAACC":68769, "GAACG":92504, "GAAGA":104286, "GAAGT":66524, "GAAGC":117256, "GAAGG":87790, + "GATAA":130595, "GATAT":109602, "GATAC":71944, "GATAG":71651, "GATTA":79090, "GATTT":115053, "GATTC":65989, "GATTG":79948, "GATCA":86084, "GATCT":71459, "GATCC":83229, "GATCG":121970, "GATGA":133691, "GATGT":71903, "GATGC":135205, "GATGG":122241, + "GACAA":61818, "GACAT":53086, "GACAC":30692, "GACAG":63774, "GACTA":27005, "GACTT":45741, "GACTC":33486, "GACTG":53067, "GACCA":91342, "GACCT":60899, "GACCC":55591, "GACCG":103662, "GACGA":92517, "GACGT":73872, "GACGC":134716, "GACGG":107319, + "GAGAA":75111, "GAGAT":68972, "GAGAC":38780, "GAGAG":50363, "GAGTA":37654, "GAGTT":46205, "GAGTC":32832, "GAGTG":34886, "GAGCA":90455, "GAGCT":78958, "GAGCC":68760, "GAGCG":103374, "GAGGA":54066, "GAGGT":50758, "GAGGC":67993, "GAGGG":44975, + "GTAAA":93174, "GTAAT":63273, "GTAAC":46309, "GTAAG":40520, "GTATA":33683, "GTATT":72524, "GTATC":71496, "GTATG":45302, "GTACA":41925, "GTACT":43286, "GTACC":64705, "GTACG":61126, "GTAGA":35624, "GTAGT":34503, "GTAGC":67471, "GTAGG":28829, + "GTTAA":86892, "GTTAT":77512, "GTTAC":46756, "GTTAG":29996, "GTTTA":77547, "GTTTT":138516, "GTTTC":89869, "GTTTG":82597, "GTTCA":94801, "GTTCT":64452, "GTTCC":68381, "GTTCG":86399, "GTTGA":90948, "GTTGT":55841, "GTTGC":82966, "GTTGG":60966, + "GTCAA":64956, "GTCAT":83211, "GTCAC":64410, "GTCAG":115048, "GTCTA":20659, "GTCTT":51931, "GTCTC":39269, "GTCTG":81600, "GTCCA":51616, "GTCCT":38607, "GTCCC":37118, "GTCCG":68527, "GTCGA":85058, "GTCGT":66767, "GTCGC":130467, "GTCGG":100928, + "GTGAA":87672, "GTGAT":92677, "GTGAC":63008, "GTGAG":45445, "GTGTA":27172, "GTGTT":47002, "GTGTC":30646, "GTGTG":26763, "GTGCA":56820, "GTGCT":83601, "GTGCC":70681, "GTGCG":78071, "GTGGA":66023, "GTGGT":88417, "GTGGC":105548, "GTGGG":59614, + "GCAAA":133282, "GCAAT":87452, "GCAAC":82381, "GCAAG":54692, "GCATA":68334, "GCATT":85517, "GCATC":140468, "GCATG":77924, "GCACA":51670, "GCACT":46823, "GCACC":110602, "GCACG":87925, "GCAGA":124211, "GCAGT":74339, "GCAGC":266419, "GCAGG":187981, + "GCTAA":59009, "GCTAT":84332, "GCTAC":65978, "GCTAG":7869, "GCTTA":67643, "GCTTT":143070, "GCTTC":122465, "GCTTG":59641, "GCTCA":107126, "GCTCT":74184, "GCTCC":75284, "GCTCG":96000, "GCTGA":208581, "GCTGT":119914, "GCTGC":266463, "GCTGG":308920, + "GCCAA":100600, "GCCAT":135559, "GCCAC":111727, "GCCAG":261097, "GCCTA":29035, "GCCTT":100208, "GCCTC":70937, "GCCTG":193513, "GCCCA":99787, "GCCCT":80281, "GCCCC":81333, "GCCCG":161459, "GCCGA":179398, "GCCGT":156529, "GCCGC":304610, "GCCGG":244996, + "GCGAA":145515, "GCGAT":183436, "GCGAC":127784, "GCGAG":91111, "GCGTA":95432, "GCGTT":136592, "GCGTC":135639, "GCGTG":110121, "GCGCA":196128, "GCGCT":240004, "GCGCC":280908, "GCGCG":286517, "GCGGA":135209, "GCGGT":153182, "GCGGC":297461, "GCGGG":159137, + "GGAAA":121918, "GGAAT":65864, "GGAAC":67468, "GGAAG":97794, "GGATA":90765, "GGATT":76366, "GGATC":83051, "GGATG":92604, "GGACA":47132, "GGACT":36167, "GGACC":36140, "GGACG":72082, "GGAGA":76505, "GGAGT":41568, "GGAGC":70782, "GGAGG":52184, + "GGTAA":93391, "GGTAT":82383, "GGTAC":62298, "GGTAG":50073, "GGTTA":74409, "GGTTT":114431, "GGTTC":68165, "GGTTG":77853, "GGTCA":112178, "GGTCT":58339, "GGTCC":35727, "GGTCG":100940, "GGTGA":126007, "GGTGT":54038, "GGTGC":102853, "GGTGG":119673, + "GGCAA":134354, "GGCAT":110460, "GGCAC":70529, "GGCAG":143854, "GGCTA":69428, "GGCTT":103942, "GGCTC":67986, "GGCTG":168174, "GGCCA":142015, "GGCCT":100222, "GGCCC":74361, "GGCCG":154986, "GGCGA":219192, "GGCGT":165822, "GGCGC":272305, "GGCGG":251438, + "GGGAA":83036, "GGGAT":82103, "GGGAC":37086, "GGGAG":50475, "GGGTA":61814, "GGGTT":73471, "GGGTC":55657, "GGGTG":70337, "GGGCA":91664, "GGGCT":86664, "GGGCC":73345, "GGGCG":151343, "GGGGA":69576, "GGGGT":52474, "GGGGC":78422, "GGGGG":71811 + }, + "overrepresented_sequences": { + } + }, + "command": "fastp -t 4 -i test-01_R1.fastq.gz -I test-01_R2.fastq.gz --cut_tail -o test-01_R1.trim.fastq.gz -O test-01_R2.trim.fastq.gz -j test-01_fastp.json " +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-01_fastp.tsv Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,2 @@ +total_reads_before_filtering total_reads_after_filtering total_bases_before_filtering total_bases_after_filtering read1_mean_length_before_filtering read1_mean_length_after_filtering read2_mean_length_before_filtering read2_mean_length_after_filtering q20_bases_before_filtering q20_bases_after_filtering q20_rate_before_filtering q20_rate_after_filtering q30_bases_before_filtering q30_bases_after_filtering q30_rate_before_filtering q30_rate_after_filtering gc_content_before_filtering gc_content_after_filtering adapter_trimmed_reads adapter_trimmed_bases +784184 770852 184992455 175626094 235 227 235 227 171398822 164624407 0.926518 0.937357 164299769 158643912 0.888143 0.903305 0.555198 0.554226 3362 71562
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-02_fastp.json Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,404 @@ +{ + "summary": { + "fastp_version": "0.23.2", + "sequencing": "paired end (301 cycles + 301 cycles)", + "before_filtering": { + "total_reads":2489208, + "total_bases":538461532, + "q20_bases":486388202, + "q30_bases":439107721, + "q20_rate":0.903292, + "q30_rate":0.815486, + "read1_mean_length":212, + "read2_mean_length":220, + "gc_content":0.512001 + }, + "after_filtering": { + "total_reads":2489208, + "total_bases":538461532, + "q20_bases":486388202, + "q30_bases":439107721, + "q20_rate":0.903292, + "q30_rate":0.815486, + "read1_mean_length":212, + "read2_mean_length":220, + "gc_content":0.512001 + } + }, + "filtering_result": { + "passed_filter_reads": 2489208, + "low_quality_reads": 0, + "too_many_N_reads": 0, + "too_short_reads": 0, + "too_long_reads": 0 + }, + "duplication": { + "rate": 0.00105174 + }, + "insert_size": { + "peak": 175, + "unknown": 239303, + "histogram": 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"ATGCC":335059, "ATGCG":265004, "ATGGA":235009, "ATGGT":284292, "ATGGC":374704, "ATGGG":186264, + "ACAAA":319471, "ACAAT":224072, "ACAAC":269023, "ACAAG":207430, "ACATA":168243, "ACATT":240596, "ACATC":286956, "ACATG":185989, "ACACA":166184, "ACACT":133170, "ACACC":260462, "ACACG":165137, "ACAGA":199339, "ACAGT":165136, "ACAGC":332141, "ACAGG":245407, + "ACTAA":140543, "ACTAT":159881, "ACTAC":152885, "ACTAG":43511, "ACTTA":139936, "ACTTT":245087, "ACTTC":265167, "ACTTG":161762, "ACTCA":171546, "ACTCT":129371, "ACTCC":148376, "ACTCG":134644, "ACTGA":231292, "ACTGT":161706, "ACTGC":250146, "ACTGG":289357, + "ACCAA":271861, "ACCAT":286917, "ACCAC":301226, "ACCAG":403856, "ACCTA":104334, "ACCTT":251172, "ACCTC":164767, "ACCTG":363599, "ACCCA":209789, "ACCCT":174558, "ACCCC":149630, "ACCCG":234406, "ACCGA":249298, "ACCGT":239687, "ACCGC":356117, "ACCGG":288554, + "ACGAA":245457, "ACGAT":253696, "ACGAC":200533, "ACGAG":149032, "ACGTA":135319, "ACGTT":230220, "ACGTC":191009, "ACGTG":162388, "ACGCA":229190, "ACGCT":258153, "ACGCC":354569, "ACGCG":235584, "ACGGA":150385, "ACGGT":240166, "ACGGC":332062, "ACGGG":164071, + "AGAAA":399397, "AGAAT":230099, "AGAAC":255931, "AGAAG":287839, "AGATA":229868, "AGATT":231199, "AGATC":262142, "AGATG":252477, "AGACA":153796, "AGACT":109067, "AGACC":181511, "AGACG":161940, "AGAGA":172779, "AGAGT":128279, "AGAGC":213634, "AGAGG":136930, + "AGTAA":193021, "AGTAT":169468, "AGTAC":178550, "AGTAG":113395, "AGTTA":174045, "AGTTT":250253, "AGTTC":248872, "AGTTG":223051, "AGTCA":186142, "AGTCT":107131, "AGTCC":113031, "AGTCG":161453, "AGTGA":185118, "AGTGT":124402, "AGTGC":180646, "AGTGG":177911, + "AGCAA":326340, "AGCAT":271993, "AGCAC":313560, "AGCAG":469471, "AGCTA":132454, "AGCTT":242765, "AGCTC":202650, "AGCTG":381806, "AGCCA":300750, "AGCCT":208409, "AGCCC":225794, "AGCCG":304350, "AGCGA":268924, "AGCGT":257540, "AGCGC":466307, "AGCGG":328236, + "AGGAA":246141, "AGGAT":220887, "AGGAC":134558, "AGGAG":147384, "AGGTA":176811, "AGGTT":225261, "AGGTC":207340, "AGGTG":271224, "AGGCA":209447, "AGGCT":208122, "AGGCC":319082, "AGGCG":361315, "AGGGA":125563, "AGGGT":173405, "AGGGC":250073, "AGGGG":136820, + "TAAAA":437663, "TAAAT":314764, "TAAAC":246549, "TAAAG":289803, "TAATA":270756, "TAATT":259012, "TAATC":224169, "TAATG":256752, "TAACA":216525, "TAACT":177601, "TAACC":196796, "TAACG":201020, "TAAGA":146191, "TAAGT":137742, "TAAGC":161480, "TAAGG":124565, + "TATAA":230041, "TATAT":210028, "TATAC":135585, "TATAG":121168, "TATTA":267461, "TATTT":370720, "TATTC":255807, "TATTG":261411, "TATCA":311275, "TATCT":225040, "TATCC":202489, "TATCG":253788, "TATGA":211871, "TATGT":154799, "TATGC":202492, "TATGG":177683, + "TACAA":205814, "TACAT":180752, "TACAC":145857, "TACAG":196533, "TACTA":115659, "TACTT":191259, "TACTC":129463, "TACTG":216738, "TACCA":226556, "TACCT":176359, "TACCC":153184, "TACCG":234698, "TACGA":150102, "TACGT":132019, "TACGC":192466, "TACGG":155948, + "TAGAA":164567, "TAGAT":142640, "TAGAC":86487, "TAGAG":106507, "TAGTA":112160, "TAGTT":145305, "TAGTC":101269, "TAGTG":115733, "TAGCA":138155, "TAGCT":130022, "TAGCC":151456, "TAGCG":163108, "TAGGA":72111, "TAGGT":102395, "TAGGC":102463, "TAGGG":70969, + "TTAAA":373699, "TTAAT":325007, "TTAAC":249466, "TTAAG":167333, "TTATA":226323, "TTATT":383987, "TTATC":324730, "TTATG":219638, "TTACA":184782, "TTACT":189317, "TTACC":250811, "TTACG":182055, "TTAGA":136579, "TTAGT":131484, "TTAGC":169073, "TTAGG":94825, + "TTTAA":371697, "TTTAT":421813, "TTTAC":274359, "TTTAG":193186, "TTTTA":424110, "TTTTT":645458, "TTTTC":446910, "TTTTG":379148, "TTTCA":424087, "TTTCT":360458, "TTTCC":286193, "TTTCG":272473, "TTTGA":325445, "TTTGT":286483, "TTTGC":324685, "TTTGG":230014, + "TTCAA":364791, "TTCAT":399595, "TTCAC":287158, "TTCAG":397317, "TTCTA":161035, "TTCTT":394810, "TTCTC":226591, "TTCTG":351915, "TTCCA":308218, "TTCCT":240560, "TTCCC":181177, "TTCCG":221781, "TTCGA":255009, "TTCGT":238075, "TTCGC":308436, "TTCGG":242007, + "TTGAA":387662, "TTGAT":408076, "TTGAC":222290, "TTGAG":234866, "TTGTA":195639, "TTGTT":335072, "TTGTC":218210, "TTGTG":193502, "TTGCA":263541, "TTGCT":315459, "TTGCC":345283, "TTGCG":272193, "TTGGA":159776, "TTGGT":261368, "TTGGC":299565, "TTGGG":152464, + "TCAAA":330380, "TCAAT":315917, "TCAAC":327642, "TCAAG":270033, "TCATA":213324, "TCATT":308736, "TCATC":402851, "TCATG":267398, "TCACA":188854, "TCACT":185740, "TCACC":378266, "TCACG":229991, "TCAGA":244759, "TCAGT":228882, "TCAGC":455235, "TCAGG":332184, + "TCTAA":136785, "TCTAT":161073, "TCTAC":147470, "TCTAG":47294, "TCTTA":143051, "TCTTT":365204, "TCTTC":388458, "TCTTG":224400, "TCTCA":147073, "TCTCT":164447, "TCTCC":170544, "TCTCG":188485, "TCTGA":240724, "TCTGT":186308, "TCTGC":332167, "TCTGG":308909, + "TCCAA":161528, "TCCAT":232765, "TCCAC":208472, "TCCAG":408184, "TCCTA":71200, "TCCTT":193731, "TCCTC":168404, "TCCTG":303693, "TCCCA":150534, "TCCCT":123209, "TCCCC":132654, "TCCCG":162341, "TCCGA":120989, "TCCGT":146625, "TCCGC":238432, "TCCGG":227117, + "TCGAA":259060, "TCGAT":319122, "TCGAC":280900, "TCGAG":222086, "TCGTA":172478, "TCGTT":237137, "TCGTC":248863, "TCGTG":190378, "TCGCA":181595, "TCGCT":263894, "TCGCC":448050, "TCGCG":295024, "TCGGA":145591, "TCGGT":247315, "TCGGC":424848, "TCGGG":171790, + "TGAAA":454217, "TGAAT":311663, "TGAAC":346326, "TGAAG":368154, "TGATA":309969, "TGATT":354580, "TGATC":344524, "TGATG":476008, "TGACA":195537, "TGACT":162378, "TGACC":314580, "TGACG":284123, "TGAGA":148864, "TGAGT":165094, "TGAGC":272477, "TGAGG":162571, + "TGTAA":182648, "TGTAT":193634, "TGTAC":173411, "TGTAG":155280, "TGTTA":205215, "TGTTT":327692, "TGTTC":322175, "TGTTG":321027, "TGTCA":190442, "TGTCT":142551, "TGTCC":161295, "TGTCG":260112, "TGTGA":156778, "TGTGT":137048, "TGTGC":204558, "TGTGG":201320, + "TGCAA":265394, "TGCAT":244411, "TGCAC":239888, "TGCAG":399137, "TGCTA":135991, "TGCTT":292521, "TGCTC":286770, "TGCTG":637004, "TGCCA":312839, "TGCCT":204120, "TGCCC":272674, "TGCCG":494843, "TGCGA":181158, "TGCGT":224774, "TGCGC":483183, "TGCGG":305485, + "TGGAA":312926, "TGGAT":286441, "TGGAC":187512, "TGGAG":206367, "TGGTA":223187, "TGGTT":296369, "TGGTC":277622, "TGGTG":440876, "TGGCA":315435, "TGGCT":295360, "TGGCC":437361, "TGGCG":556604, "TGGGA":150184, "TGGGT":205856, "TGGGC":305181, "TGGGG":172431, + "CAAAA":404566, "CAAAT":265583, "CAAAC":270571, "CAAAG":283025, "CAATA":271167, "CAATT":233564, "CAATC":259518, "CAATG":270993, "CAACA":341947, "CAACT":229402, "CAACC":283844, "CAACG":308033, "CAAGA":235138, "CAAGT":163534, "CAAGC":282520, "CAAGG":280941, + "CATAA":228454, "CATAT":206320, "CATAC":163484, "CATAG":144837, "CATTA":258120, "CATTT":311458, "CATTC":254111, "CATTG":267329, "CATCA":480729, "CATCT":251136, "CATCC":276972, "CATCG":397188, "CATGA":270876, "CATGT":181478, "CATGC":272340, "CATGG":287662, + "CACAA":213353, "CACAT":212018, "CACAC":179537, "CACAG":198744, "CACTA":122821, "CACTT":195601, "CACTC":128665, "CACTG":235304, "CACCA":447865, "CACCT":271306, "CACCC":248610, "CACCG":405773, "CACGA":196951, "CACGT":187910, "CACGC":305121, "CACGG":251952, + "CAGAA":363274, "CAGAT":309088, "CAGAC":221341, "CAGAG":182873, "CAGTA":219062, "CAGTT":310729, "CAGTC":190102, "CAGTG":232939, "CAGCA":644932, "CAGCT":380942, "CAGCC":413170, "CAGCG":606332, "CAGGA":307640, "CAGGT":363134, "CAGGC":501970, "CAGGG":320271, + "CTAAA":199061, "CTAAT":138452, "CTAAC":120471, "CTAAG":87528, "CTATA":123119, "CTATT":171773, "CTATC":176656, "CTATG":143355, "CTACA":161241, "CTACT":114707, "CTACC":161472, "CTACG":145129, "CTAGA":49464, "CTAGT":41875, "CTAGC":56103, "CTAGG":36222, + "CTTAA":167324, "CTTAT":177656, "CTTAC":136928, "CTTAG":87229, "CTTTA":286150, "CTTTT":360991, "CTTTC":280334, "CTTTG":276672, "CTTCA":366730, "CTTCT":302898, "CTTCC":262958, "CTTCG":317825, "CTTGA":288894, "CTTGT":197676, "CTTGC":273814, "CTTGG":200954, + "CTCAA":237912, "CTCAT":183886, "CTCAC":150852, "CTCAG":181564, "CTCTA":105808, "CTCTT":211147, "CTCTC":118340, "CTCTG":178729, "CTCCA":227178, "CTCCT":144667, "CTCCC":113206, "CTCCG":140768, "CTCGA":221683, "CTCGT":166731, "CTCGC":236687, "CTCGG":209026, + "CTGAA":397987, "CTGAT":395423, "CTGAC":289711, "CTGAG":181926, "CTGTA":193495, "CTGTT":332342, "CTGTC":199123, "CTGTG":189988, "CTGCA":399075, "CTGCT":484623, "CTGCC":358398, "CTGCG":407221, "CTGGA":391054, "CTGGT":399803, "CTGGC":596431, "CTGGG":316204, + "CCAAA":237135, "CCAAT":204445, "CCAAC":249383, "CCAAG":205041, "CCATA":180562, "CCATT":266931, "CCATC":348354, "CCATG":285067, "CCACA":210454, "CCACT":179416, "CCACC":368144, "CCACG":273868, "CCAGA":313236, "CCAGT":310106, "CCAGC":671957, "CCAGG":432317, + "CCTAA":95845, "CCTAT":105915, "CCTAC":112487, "CCTAG":36270, "CCTTA":124678, "CCTTT":245789, "CCTTC":266746, "CCTTG":276218, "CCTCA":162585, "CCTCT":134215, "CCTCC":128783, "CCTCG":226594, "CCTGA":333410, "CCTGT":241009, "CCTGC":482683, "CCTGG":430802, + "CCCAA":155932, "CCCAT":186050, "CCCAC":184366, "CCCAG":315836, "CCCTA":71688, "CCCTT":169324, "CCCTC":124817, "CCCTG":316977, "CCCCA":173090, "CCCCT":134441, "CCCCC":119161, "CCCCG":182232, "CCCGA":173273, "CCCGT":162712, "CCCGC":311837, "CCCGG":262869, + "CCGAA":243436, "CCGAT":264165, "CCGAC":255471, "CCGAG":209363, "CCGTA":156316, "CCGTT":247305, "CCGTC":249293, "CCGTG":249252, "CCGCA":307700, "CCGCT":324807, "CCGCC":497014, "CCGCG":364525, "CCGGA":229292, "CCGGT":287518, "CCGGC":483773, "CCGGG":263694, + "CGAAA":280648, "CGAAT":192544, "CGAAC":267698, "CGAAG":322303, "CGATA":255620, "CGATT":227988, "CGATC":321959, "CGATG":399096, "CGACA":266041, "CGACT":162975, "CGACC":290367, "CGACG":298767, "CGAGA":173624, "CGAGT":132642, "CGAGC":286420, "CGAGG":228705, + "CGTAA":184250, "CGTAT":183057, "CGTAC":145019, "CGTAG":145271, "CGTTA":197795, "CGTTT":277592, "CGTTC":248508, "CGTTG":302087, "CGTCA":284516, "CGTCT":203926, "CGTCC":168263, "CGTCG":295924, "CGTGA":229763, "CGTGT":133959, "CGTGC":267899, "CGTGG":272635, + "CGCAA":277053, "CGCAT":265778, "CGCAC":255927, "CGCAG":409600, "CGCTA":161797, "CGCTT":296152, "CGCTC":247605, "CGCTG":605396, "CGCCA":556853, "CGCCT":357619, "CGCCC":363010, "CGCCG":612593, "CGCGA":297660, "CGCGT":233212, "CGCGC":514861, "CGCGG":364259, + "CGGAA":249703, "CGGAT":228534, "CGGAC":143590, "CGGAG":145392, "CGGTA":235729, "CGGTT":250943, "CGGTC":239747, "CGGTG":404096, "CGGCA":473444, "CGGCT":301794, "CGGCC":434177, "CGGCG":614154, "CGGGA":164594, "CGGGT":233444, "CGGGC":328428, "CGGGG":183030, + "GAAAA":486944, "GAAAT":372928, "GAAAC":285102, "GAAAG":289470, "GAATA":258910, "GAATT":247539, "GAATC":198912, "GAATG":229150, "GAACA":335035, "GAACT":274864, "GAACC":213654, "GAACG":253241, "GAAGA":398170, "GAAGT":263506, "GAAGC":333986, "GAAGG":271276, + "GATAA":329158, "GATAT":294109, "GATAC":198658, "GATAG":177844, "GATTA":221904, "GATTT":361733, "GATTC":196852, "GATTG":254011, "GATCA":346234, "GATCT":242510, "GATCC":229567, "GATCG":346855, "GATGA":405626, "GATGT":278543, "GATGC":369514, "GATGG":348702, + "GACAA":228737, "GACAT":199431, "GACAC":149899, "GACAG":204383, "GACTA":102696, "GACTT":171866, "GACTC":106616, "GACTG":167099, "GACCA":282433, "GACCT":207308, "GACCC":156838, "GACCG":241548, "GACGA":255075, "GACGT":166685, "GACGC":267194, "GACGG":227418, + "GAGAA":234415, "GAGAT":208948, "GAGAC":107682, "GAGAG":123162, "GAGTA":129220, "GAGTT":190554, "GAGTC":104875, "GAGTG":125497, "GAGCA":316706, "GAGCT":203329, "GAGCC":179540, "GAGCG":252881, "GAGGA":171558, "GAGGT":163937, "GAGGC":195537, "GAGGG":126241, + "GTAAA":277674, "GTAAT":228629, "GTAAC":172598, "GTAAG":136959, "GTATA":132919, "GTATT":249581, "GTATC":196497, "GTATG":181130, "GTACA":175587, "GTACT":177732, "GTACC":166989, "GTACG":144033, "GTAGA":148408, "GTAGT":145747, "GTAGC":170116, "GTAGG":112287, + "GTTAA":247464, "GTTAT":242506, "GTTAC":169794, "GTTAG":115772, "GTTTA":237697, "GTTTT":393090, "GTTTC":274300, "GTTTG":256847, "GTTCA":320687, "GTTCT":244598, "GTTCC":206118, "GTTCG":263970, "GTTGA":323599, "GTTGT":247429, "GTTGC":314619, "GTTGG":244048, + "GTCAA":223768, "GTCAT":244337, 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"ATGCC":308448, "ATGCG":250277, "ATGGA":230159, "ATGGT":273058, "ATGGC":354919, "ATGGG":180996, + "ACAAA":384756, "ACAAT":243620, "ACAAC":339836, "ACAAG":223582, "ACATA":193345, "ACATT":230106, "ACATC":303581, "ACATG":189560, "ACACA":249760, "ACACT":157943, "ACACC":329641, "ACACG":171119, "ACAGA":235446, "ACAGT":177054, "ACAGC":350543, "ACAGG":252600, + "ACTAA":160440, "ACTAT":165927, "ACTAC":170997, "ACTAG":56210, "ACTTA":149850, "ACTTT":250412, "ACTTC":266972, "ACTTG":162698, "ACTCA":185257, "ACTCT":135274, "ACTCC":147305, "ACTCG":141332, "ACTGA":233401, "ACTGT":167529, "ACTGC":252833, "ACTGG":282750, + "ACCAA":310216, "ACCAT":297971, "ACCAC":363760, "ACCAG":407217, "ACCTA":117409, "ACCTT":257533, "ACCTC":184318, "ACCTG":354571, "ACCCA":259917, "ACCCT":196173, "ACCCC":277509, "ACCCG":277357, "ACCGA":263049, "ACCGT":247506, "ACCGC":391798, "ACCGG":319028, + "ACGAA":259515, "ACGAT":252168, "ACGAC":221501, "ACGAG":167013, "ACGTA":144076, "ACGTT":232390, "ACGTC":179114, "ACGTG":168830, "ACGCA":247305, "ACGCT":254990, "ACGCC":390944, "ACGCG":246492, "ACGGA":187561, "ACGGT":243731, "ACGGC":340677, "ACGGG":179148, + "AGAAA":383548, "AGAAT":236327, "AGAAC":293296, "AGAAG":285679, "AGATA":241373, "AGATT":280745, "AGATC":330227, "AGATG":247052, "AGACA":176234, "AGACT":119234, "AGACC":211879, "AGACG":169085, "AGAGA":195667, "AGAGT":189682, "AGAGC":281771, "AGAGG":160125, + "AGTAA":201717, "AGTAT":173000, "AGTAC":184546, "AGTAG":123901, "AGTTA":182073, "AGTTT":251587, "AGTTC":243754, "AGTTG":214915, "AGTCA":166890, "AGTCT":109692, "AGTCC":120308, "AGTCG":162058, "AGTGA":188116, "AGTGT":214877, "AGTGC":180779, "AGTGG":180306, + "AGCAA":329407, "AGCAT":271558, "AGCAC":305585, "AGCAG":446112, "AGCTA":136995, "AGCTT":242684, "AGCTC":202504, "AGCTG":359373, "AGCCA":305697, "AGCCT":213369, "AGCCC":270947, "AGCCG":315737, "AGCGA":270044, "AGCGT":320048, "AGCGC":465831, "AGCGG":334833, + "AGGAA":259696, "AGGAT":212165, "AGGAC":143946, "AGGAG":153622, "AGGTA":178837, "AGGTT":224404, "AGGTC":202654, "AGGTG":258337, "AGGCA":212965, "AGGCT":200066, "AGGCC":320327, "AGGCG":341507, "AGGGA":215181, "AGGGT":192176, "AGGGC":257166, "AGGGG":157517, + "TAAAA":484840, "TAAAT":324927, "TAAAC":266870, "TAAAG":291425, "TAATA":278973, "TAATT":262047, "TAATC":227131, "TAATG":256350, "TAACA":250285, "TAACT":187046, "TAACC":214460, "TAACG":208024, "TAAGA":220505, "TAAGT":144320, "TAAGC":170516, "TAAGG":133499, + "TATAA":239478, "TATAT":212698, "TATAC":145178, "TATAG":125889, "TATTA":270023, "TATTT":372039, "TATTC":254079, "TATTG":253511, "TATCA":321542, "TATCT":223015, "TATCC":206076, "TATCG":245221, "TATGA":209436, "TATGT":153528, "TATGC":176225, "TATGG":175107, + "TACAA":228703, "TACAT":192259, "TACAC":171837, "TACAG":204036, "TACTA":123734, "TACTT":195487, "TACTC":136854, "TACTG":217283, "TACCA":240655, "TACCT":179633, "TACCC":178580, "TACCG":238991, "TACGA":157069, "TACGT":136260, "TACGC":197453, "TACGG":161990, + "TAGAA":174204, "TAGAT":181485, "TAGAC":96899, "TAGAG":115304, "TAGTA":118794, "TAGTT":151340, "TAGTC":104236, "TAGTG":163103, "TAGCA":147855, "TAGCT":134019, "TAGCC":158764, "TAGCG":164289, "TAGGA":83157, "TAGGT":107838, "TAGGC":105447, "TAGGG":148459, + "TTAAA":408413, "TTAAT":332310, "TTAAC":266123, "TTAAG":228217, "TTATA":230060, "TTATT":384751, "TTATC":319203, "TTATG":218132, "TTACA":199651, "TTACT":196343, "TTACC":260384, "TTACG":188341, "TTAGA":146501, "TTAGT":177391, "TTAGC":172836, "TTAGG":105664, + "TTTAA":381270, "TTTAT":418460, "TTTAC":281353, "TTTAG":199787, "TTTTA":427967, "TTTTT":648335, "TTTTC":450745, "TTTTG":371641, "TTTCA":424785, "TTTCT":358280, "TTTCC":304153, "TTTCG":271861, "TTTGA":316594, "TTTGT":282418, "TTTGC":319272, "TTTGG":224654, + "TTCAA":368867, "TTCAT":394181, "TTCAC":293558, "TTCAG":364670, "TTCTA":163234, "TTCTT":394212, "TTCTC":225592, "TTCTG":323321, "TTCCA":314694, "TTCCT":245094, "TTCCC":222024, "TTCCG":233012, "TTCGA":245444, "TTCGT":236970, "TTCGC":309424, "TTCGG":239093, + "TTGAA":354101, "TTGAT":393406, "TTGAC":222012, "TTGAG":225507, "TTGTA":195460, "TTGTT":331610, "TTGTC":216113, "TTGTG":188266, "TTGCA":260380, "TTGCT":306536, "TTGCC":348270, "TTGCG":261353, "TTGGA":158155, "TTGGT":255465, "TTGGC":289428, "TTGGG":150380, + "TCAAA":339780, "TCAAT":314383, "TCAAC":338152, "TCAAG":262267, "TCATA":217864, "TCATT":319918, "TCATC":392431, "TCATG":260457, "TCACA":188752, "TCACT":192852, "TCACC":388038, "TCACG":234434, "TCAGA":227334, "TCAGT":224956, "TCAGC":432936, "TCAGG":316801, + "TCTAA":142078, "TCTAT":161106, "TCTAC":152548, "TCTAG":55836, "TCTTA":147722, "TCTTT":365274, "TCTTC":360063, "TCTTG":221310, "TCTCA":151710, "TCTCT":164323, "TCTCC":180423, "TCTCG":183339, "TCTGA":213861, "TCTGT":186988, "TCTGC":301524, "TCTGG":295187, + "TCCAA":177098, "TCCAT":236427, "TCCAC":236546, "TCCAG":377343, "TCCTA":78877, "TCCTT":201467, "TCCTC":179894, "TCCTG":303147, "TCCCA":173312, "TCCCT":141439, "TCCCC":214368, "TCCCG":200545, "TCCGA":131756, "TCCGT":153786, "TCCGC":262582, "TCCGG":238913, + "TCGAA":248214, "TCGAT":298689, "TCGAC":271384, "TCGAG":210450, "TCGTA":151000, "TCGTT":239837, "TCGTC":246075, "TCGTG":230932, "TCGCA":191494, "TCGCT":257620, "TCGCC":469923, "TCGCG":292837, "TCGGA":209008, "TCGGT":260962, "TCGGC":408039, "TCGGG":195338, + "TGAAA":425931, "TGAAT":303054, "TGAAC":324255, "TGAAG":357611, "TGATA":305710, "TGATT":346089, "TGATC":321531, "TGATG":445862, "TGACA":203180, "TGACT":161987, "TGACC":311446, "TGACG":278561, "TGAGA":153400, "TGAGT":162812, "TGAGC":259182, "TGAGG":160806, + "TGTAA":198327, "TGTAT":193308, "TGTAC":178073, "TGTAG":231977, "TGTTA":255022, "TGTTT":324747, "TGTTC":316340, "TGTTG":309007, "TGTCA":193612, "TGTCT":142418, "TGTCC":169704, "TGTCG":255673, "TGTGA":155387, "TGTGT":139700, "TGTGC":196346, "TGTGG":195042, + "TGCAA":266059, "TGCAT":238861, "TGCAC":244390, "TGCAG":383386, "TGCTA":140944, "TGCTT":270113, "TGCTC":270882, "TGCTG":590773, "TGCCA":311204, "TGCCT":205206, "TGCCC":316007, "TGCCG":465253, "TGCGA":176564, "TGCGT":216455, "TGCGC":450924, "TGCGG":291613, + "TGGAA":303748, "TGGAT":270415, "TGGAC":188426, "TGGAG":207758, "TGGTA":227711, "TGGTT":292234, "TGGTC":288948, "TGGTG":408777, "TGGCA":305176, "TGGCT":282147, "TGGCC":437332, "TGGCG":515725, "TGGGA":151603, "TGGGT":200156, "TGGGC":290591, "TGGGG":173486, + "CAAAA":454031, "CAAAT":275602, "CAAAC":321176, "CAAAG":288914, "CAATA":284319, "CAATT":237403, "CAATC":268628, "CAATG":266190, "CAACA":406717, "CAACT":241294, "CAACC":347148, "CAACG":322184, "CAAGA":257757, "CAAGT":167037, "CAAGC":292593, "CAAGG":272681, + "CATAA":246336, "CATAT":210385, "CATAC":183739, "CATAG":149069, "CATTA":282115, "CATTT":314343, "CATTC":237389, "CATTG":260943, "CATCA":478538, "CATCT":250349, "CATCC":302781, "CATCG":379870, "CATGA":267809, "CATGT":183354, "CATGC":271627, "CATGG":275088, + "CACAA":271004, "CACAT":209070, "CACAC":243196, "CACAG":224274, "CACTA":144039, "CACTT":204562, "CACTC":153467, "CACTG":240822, "CACCA":495721, "CACCT":286167, "CACCC":381205, "CACCG":432828, "CACGA":216127, "CACGT":175257, "CACGC":336853, "CACGG":273992, + "CAGAA":354035, "CAGAT":321217, "CAGAC":244795, "CAGAG":202934, "CAGTA":225131, "CAGTT":302309, "CAGTC":173757, "CAGTG":230932, "CAGCA":620769, "CAGCT":364804, "CAGCC":454450, "CAGCG":579383, "CAGGA":306199, "CAGGT":347320, "CAGGC":488122, "CAGGG":321088, + "CTAAA":210677, "CTAAT":144599, "CTAAC":138793, "CTAAG":96226, "CTATA":129120, "CTATT":173267, "CTATC":178618, "CTATG":140478, "CTACA":178153, "CTACT":121254, "CTACC":179379, "CTACG":149415, "CTAGA":59501, "CTAGT":49492, "CTAGC":66918, "CTAGG":46830, + "CTTAA":179904, "CTTAT":179002, "CTTAC":149152, "CTTAG":94311, "CTTTA":290407, "CTTTT":368180, "CTTTC":291496, "CTTTG":270850, "CTTCA":363760, "CTTCT":279971, "CTTCC":287543, "CTTCG":309293, "CTTGA":260232, "CTTGT":196604, "CTTGC":274607, "CTTGG":197738, + "CTCAA":238442, "CTCAT":186059, "CTCAC":174152, "CTCAG":181271, "CTCTA":110349, "CTCTT":212528, "CTCTC":127719, "CTCTG":178798, "CTCCA":221315, "CTCCT":155887, "CTCCC":171839, "CTCCG":161546, "CTCGA":210071, "CTCGT":150247, "CTCGC":246228, "CTCGG":230057, + "CTGAA":369023, "CTGAT":373612, "CTGAC":290397, "CTGAG":178658, "CTGTA":198745, "CTGTT":325696, "CTGTC":202779, "CTGTG":185817, "CTGCA":387846, "CTGCT":437247, "CTGCC":391736, "CTGCG":386044, "CTGGA":369514, "CTGGT":381898, "CTGGC":573511, "CTGGG":300428, + "CCAAA":271115, "CCAAT":213168, "CCAAC":310824, "CCAAG":217539, "CCATA":193296, "CCATT":273724, "CCATC":359663, "CCATG":285178, "CCACA":271313, "CCACT":201440, "CCACC":498182, "CCACG":309471, "CCAGA":327473, "CCAGT":284648, "CCAGC":674030, "CCAGG":426434, + "CCTAA":108728, "CCTAT":110207, "CCTAC":132570, "CCTAG":45643, "CCTTA":137148, "CCTTT":261164, "CCTTC":288250, "CCTTG":274194, "CCTCA":182480, "CCTCT":146153, "CCTCC":194130, "CCTCG":240284, "CCTGA":329691, "CCTGT":246259, "CCTGC":488970, "CCTGG":423825, + "CCCAA":210566, "CCCAT":212023, "CCCAC":312218, "CCCAG":352775, "CCCTA":90543, "CCCTT":201394, "CCCTC":183246, "CCCTG":348064, "CCCCA":299154, "CCCCT":204129, "CCCCC":549768, "CCCCG":320138, "CCCGA":216596, "CCCGT":197527, "CCCGC":444389, "CCCGG":344605, + "CCGAA":267182, "CCGAT":265311, "CCGAC":290040, "CCGAG":211736, "CCGTA":182272, "CCGTT":262026, "CCGTC":251154, "CCGTG":255525, "CCGCA":350217, "CCGCT":338874, "CCGCC":632864, "CCGCG":399033, "CCGGA":264012, "CCGGT":310616, "CCGGC":541320, "CCGGG":295648, + "CGAAA":291112, "CGAAT":190808, "CGAAC":285807, "CGAAG":313226, "CGATA":250195, "CGATT":225155, "CGATC":312940, "CGATG":371928, "CGACA":278338, "CGACT":165211, "CGACC":318811, "CGACG":308285, "CGAGA":179135, "CGAGT":139027, "CGAGC":283696, "CGAGG":221987, + "CGTAA":193321, "CGTAT":172035, "CGTAC":157936, "CGTAG":156388, "CGTTA":206986, "CGTTT":281608, "CGTTC":256534, "CGTTG":296429, "CGTCA":281011, "CGTCT":163017, "CGTCC":203390, "CGTCG":352467, "CGTGA":228469, "CGTGT":190540, "CGTGC":265268, "CGTGG":272208, + "CGCAA":290523, "CGCAT":262492, "CGCAC":295034, "CGCAG":409494, "CGCTA":166800, "CGCTT":293650, "CGCTC":252052, "CGCTG":572531, "CGCCA":566006, "CGCCT":364530, "CGCCC":504839, "CGCCG":667096, "CGCGA":293445, "CGCGT":250672, "CGCGC":522398, "CGCGG":376319, + "CGGAA":350984, "CGGAT":225620, "CGGAC":173420, "CGGAG":156989, "CGGTA":241446, "CGGTT":256540, "CGGTC":250282, "CGGTG":414196, "CGGCA":473262, "CGGCT":294013, "CGGCC":495059, "CGGCG":603656, "CGGGA":187061, "CGGGT":250429, "CGGGC":343287, "CGGGG":210517, + "GAAAA":493802, "GAAAT":345434, "GAAAC":301298, "GAAAG":359908, "GAATA":263741, "GAATT":243596, "GAATC":197937, "GAATG":224774, "GAACA":357407, "GAACT":252302, "GAACC":237587, "GAACG":287839, "GAAGA":463555, "GAAGT":252815, "GAAGC":333448, "GAAGG":274059, + "GATAA":332373, "GATAT":285687, "GATAC":203250, "GATAG":179911, "GATTA":270334, "GATTT":351901, "GATTC":198801, "GATTG":245556, "GATCA":332286, "GATCT":247067, "GATCC":234606, "GATCG":377543, "GATGA":386674, "GATGT":265669, "GATGC":347797, "GATGG":329255, + "GACAA":245880, "GACAT":202326, "GACAC":176401, "GACAG":221444, "GACTA":112349, "GACTT":170311, "GACTC":112152, "GACTG":168287, "GACCA":291943, "GACCT":207708, "GACCC":193654, "GACCG":268108, "GACGA":260018, "GACGT":173200, "GACGC":276493, "GACGG":236539, + "GAGAA":238238, "GAGAT":218288, "GAGAC":118965, "GAGAG":141727, "GAGTA":140567, "GAGTT":190039, "GAGTC":110722, "GAGTG":175879, "GAGCA":288067, "GAGCT":198487, "GAGCC":192678, "GAGCG":328323, "GAGGA":173056, "GAGGT":163048, "GAGGC":193328, "GAGGG":167350, + "GTAAA":295562, "GTAAT":226724, "GTAAC":186645, "GTAAG":156386, "GTATA":140895, "GTATT":245157, "GTATC":205396, "GTATG":156285, "GTACA":188277, "GTACT":177283, "GTACC":176296, "GTACG":151131, "GTAGA":187311, "GTAGT":149510, "GTAGC":175789, "GTAGG":182067, + "GTTAA":316890, "GTTAT":240651, "GTTAC":179233, "GTTAG":124380, "GTTTA":246446, "GTTTT":389407, "GTTTC":275320, "GTTTG":249801, "GTTCA":317312, "GTTCT":241846, "GTTCC":218131, "GTTCG":259608, "GTTGA":312179, "GTTGT":243074, "GTTGC":306887, "GTTGG":236788, + "GTCAA":226897, "GTCAT":239154, 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"ATGCC":335059, "ATGCG":265004, "ATGGA":235009, "ATGGT":284292, "ATGGC":374704, "ATGGG":186264, + "ACAAA":319471, "ACAAT":224072, "ACAAC":269023, "ACAAG":207430, "ACATA":168243, "ACATT":240596, "ACATC":286956, "ACATG":185989, "ACACA":166184, "ACACT":133170, "ACACC":260462, "ACACG":165137, "ACAGA":199339, "ACAGT":165136, "ACAGC":332141, "ACAGG":245407, + "ACTAA":140543, "ACTAT":159881, "ACTAC":152885, "ACTAG":43511, "ACTTA":139936, "ACTTT":245087, "ACTTC":265167, "ACTTG":161762, "ACTCA":171546, "ACTCT":129371, "ACTCC":148376, "ACTCG":134644, "ACTGA":231292, "ACTGT":161706, "ACTGC":250146, "ACTGG":289357, + "ACCAA":271861, "ACCAT":286917, "ACCAC":301226, "ACCAG":403856, "ACCTA":104334, "ACCTT":251172, "ACCTC":164767, "ACCTG":363599, "ACCCA":209789, "ACCCT":174558, "ACCCC":149630, "ACCCG":234406, "ACCGA":249298, "ACCGT":239687, "ACCGC":356117, "ACCGG":288554, + "ACGAA":245457, "ACGAT":253696, "ACGAC":200533, "ACGAG":149032, "ACGTA":135319, "ACGTT":230220, "ACGTC":191009, "ACGTG":162388, "ACGCA":229190, "ACGCT":258153, "ACGCC":354569, "ACGCG":235584, "ACGGA":150385, "ACGGT":240166, "ACGGC":332062, "ACGGG":164071, + "AGAAA":399397, "AGAAT":230099, "AGAAC":255931, "AGAAG":287839, "AGATA":229868, "AGATT":231199, "AGATC":262142, "AGATG":252477, "AGACA":153796, "AGACT":109067, "AGACC":181511, "AGACG":161940, "AGAGA":172779, "AGAGT":128279, "AGAGC":213634, "AGAGG":136930, + "AGTAA":193021, "AGTAT":169468, "AGTAC":178550, "AGTAG":113395, "AGTTA":174045, "AGTTT":250253, "AGTTC":248872, "AGTTG":223051, "AGTCA":186142, "AGTCT":107131, "AGTCC":113031, "AGTCG":161453, "AGTGA":185118, "AGTGT":124402, "AGTGC":180646, "AGTGG":177911, + "AGCAA":326340, "AGCAT":271993, "AGCAC":313560, "AGCAG":469471, "AGCTA":132454, "AGCTT":242765, "AGCTC":202650, "AGCTG":381806, "AGCCA":300750, "AGCCT":208409, "AGCCC":225794, "AGCCG":304350, "AGCGA":268924, "AGCGT":257540, "AGCGC":466307, "AGCGG":328236, + "AGGAA":246141, "AGGAT":220887, "AGGAC":134558, "AGGAG":147384, "AGGTA":176811, "AGGTT":225261, "AGGTC":207340, "AGGTG":271224, "AGGCA":209447, "AGGCT":208122, "AGGCC":319082, "AGGCG":361315, "AGGGA":125563, "AGGGT":173405, "AGGGC":250073, "AGGGG":136820, + "TAAAA":437663, "TAAAT":314764, "TAAAC":246549, "TAAAG":289803, "TAATA":270756, "TAATT":259012, "TAATC":224169, "TAATG":256752, "TAACA":216525, "TAACT":177601, "TAACC":196796, "TAACG":201020, "TAAGA":146191, "TAAGT":137742, "TAAGC":161480, "TAAGG":124565, + "TATAA":230041, "TATAT":210028, "TATAC":135585, "TATAG":121168, "TATTA":267461, "TATTT":370720, "TATTC":255807, "TATTG":261411, "TATCA":311275, "TATCT":225040, "TATCC":202489, "TATCG":253788, "TATGA":211871, "TATGT":154799, "TATGC":202492, "TATGG":177683, + "TACAA":205814, "TACAT":180752, "TACAC":145857, "TACAG":196533, "TACTA":115659, "TACTT":191259, "TACTC":129463, "TACTG":216738, "TACCA":226556, "TACCT":176359, "TACCC":153184, "TACCG":234698, "TACGA":150102, "TACGT":132019, "TACGC":192466, "TACGG":155948, + "TAGAA":164567, "TAGAT":142640, "TAGAC":86487, "TAGAG":106507, "TAGTA":112160, "TAGTT":145305, "TAGTC":101269, "TAGTG":115733, "TAGCA":138155, "TAGCT":130022, "TAGCC":151456, "TAGCG":163108, "TAGGA":72111, "TAGGT":102395, "TAGGC":102463, "TAGGG":70969, + "TTAAA":373699, "TTAAT":325007, "TTAAC":249466, "TTAAG":167333, "TTATA":226323, "TTATT":383987, "TTATC":324730, "TTATG":219638, "TTACA":184782, "TTACT":189317, "TTACC":250811, "TTACG":182055, "TTAGA":136579, "TTAGT":131484, "TTAGC":169073, "TTAGG":94825, + "TTTAA":371697, "TTTAT":421813, "TTTAC":274359, "TTTAG":193186, "TTTTA":424110, "TTTTT":645458, "TTTTC":446910, "TTTTG":379148, "TTTCA":424087, "TTTCT":360458, "TTTCC":286193, "TTTCG":272473, "TTTGA":325445, "TTTGT":286483, "TTTGC":324685, "TTTGG":230014, + "TTCAA":364791, "TTCAT":399595, "TTCAC":287158, "TTCAG":397317, "TTCTA":161035, "TTCTT":394810, "TTCTC":226591, "TTCTG":351915, "TTCCA":308218, "TTCCT":240560, "TTCCC":181177, "TTCCG":221781, "TTCGA":255009, "TTCGT":238075, "TTCGC":308436, "TTCGG":242007, + "TTGAA":387662, "TTGAT":408076, "TTGAC":222290, "TTGAG":234866, "TTGTA":195639, "TTGTT":335072, "TTGTC":218210, "TTGTG":193502, "TTGCA":263541, "TTGCT":315459, "TTGCC":345283, "TTGCG":272193, "TTGGA":159776, "TTGGT":261368, "TTGGC":299565, "TTGGG":152464, + "TCAAA":330380, "TCAAT":315917, "TCAAC":327642, "TCAAG":270033, "TCATA":213324, "TCATT":308736, "TCATC":402851, "TCATG":267398, "TCACA":188854, "TCACT":185740, "TCACC":378266, "TCACG":229991, "TCAGA":244759, "TCAGT":228882, "TCAGC":455235, "TCAGG":332184, + "TCTAA":136785, "TCTAT":161073, "TCTAC":147470, "TCTAG":47294, "TCTTA":143051, "TCTTT":365204, "TCTTC":388458, "TCTTG":224400, "TCTCA":147073, "TCTCT":164447, "TCTCC":170544, "TCTCG":188485, "TCTGA":240724, "TCTGT":186308, "TCTGC":332167, "TCTGG":308909, + "TCCAA":161528, "TCCAT":232765, "TCCAC":208472, "TCCAG":408184, "TCCTA":71200, "TCCTT":193731, "TCCTC":168404, "TCCTG":303693, "TCCCA":150534, "TCCCT":123209, "TCCCC":132654, "TCCCG":162341, "TCCGA":120989, "TCCGT":146625, "TCCGC":238432, "TCCGG":227117, + "TCGAA":259060, "TCGAT":319122, "TCGAC":280900, "TCGAG":222086, "TCGTA":172478, "TCGTT":237137, "TCGTC":248863, "TCGTG":190378, "TCGCA":181595, "TCGCT":263894, "TCGCC":448050, "TCGCG":295024, "TCGGA":145591, "TCGGT":247315, "TCGGC":424848, "TCGGG":171790, + "TGAAA":454217, "TGAAT":311663, "TGAAC":346326, "TGAAG":368154, "TGATA":309969, "TGATT":354580, "TGATC":344524, "TGATG":476008, "TGACA":195537, "TGACT":162378, "TGACC":314580, "TGACG":284123, "TGAGA":148864, "TGAGT":165094, "TGAGC":272477, "TGAGG":162571, + "TGTAA":182648, "TGTAT":193634, "TGTAC":173411, "TGTAG":155280, "TGTTA":205215, "TGTTT":327692, "TGTTC":322175, "TGTTG":321027, "TGTCA":190442, "TGTCT":142551, "TGTCC":161295, "TGTCG":260112, "TGTGA":156778, "TGTGT":137048, "TGTGC":204558, "TGTGG":201320, + "TGCAA":265394, "TGCAT":244411, "TGCAC":239888, "TGCAG":399137, "TGCTA":135991, "TGCTT":292521, "TGCTC":286770, "TGCTG":637004, "TGCCA":312839, "TGCCT":204120, "TGCCC":272674, "TGCCG":494843, "TGCGA":181158, "TGCGT":224774, "TGCGC":483183, "TGCGG":305485, + "TGGAA":312926, "TGGAT":286441, "TGGAC":187512, "TGGAG":206367, "TGGTA":223187, "TGGTT":296369, "TGGTC":277622, "TGGTG":440876, "TGGCA":315435, "TGGCT":295360, "TGGCC":437361, "TGGCG":556604, "TGGGA":150184, "TGGGT":205856, "TGGGC":305181, "TGGGG":172431, + "CAAAA":404566, "CAAAT":265583, "CAAAC":270571, "CAAAG":283025, "CAATA":271167, "CAATT":233564, "CAATC":259518, "CAATG":270993, "CAACA":341947, "CAACT":229402, "CAACC":283844, "CAACG":308033, "CAAGA":235138, "CAAGT":163534, "CAAGC":282520, "CAAGG":280941, + "CATAA":228454, "CATAT":206320, "CATAC":163484, "CATAG":144837, "CATTA":258120, "CATTT":311458, "CATTC":254111, "CATTG":267329, "CATCA":480729, "CATCT":251136, "CATCC":276972, "CATCG":397188, "CATGA":270876, "CATGT":181478, "CATGC":272340, "CATGG":287662, + "CACAA":213353, "CACAT":212018, "CACAC":179537, "CACAG":198744, "CACTA":122821, "CACTT":195601, "CACTC":128665, "CACTG":235304, "CACCA":447865, "CACCT":271306, "CACCC":248610, "CACCG":405773, "CACGA":196951, "CACGT":187910, "CACGC":305121, "CACGG":251952, + "CAGAA":363274, "CAGAT":309088, "CAGAC":221341, "CAGAG":182873, "CAGTA":219062, "CAGTT":310729, "CAGTC":190102, "CAGTG":232939, "CAGCA":644932, "CAGCT":380942, "CAGCC":413170, "CAGCG":606332, "CAGGA":307640, "CAGGT":363134, "CAGGC":501970, "CAGGG":320271, + "CTAAA":199061, "CTAAT":138452, "CTAAC":120471, "CTAAG":87528, "CTATA":123119, "CTATT":171773, "CTATC":176656, "CTATG":143355, "CTACA":161241, "CTACT":114707, "CTACC":161472, "CTACG":145129, "CTAGA":49464, "CTAGT":41875, "CTAGC":56103, "CTAGG":36222, + "CTTAA":167324, "CTTAT":177656, "CTTAC":136928, "CTTAG":87229, "CTTTA":286150, "CTTTT":360991, "CTTTC":280334, "CTTTG":276672, "CTTCA":366730, "CTTCT":302898, "CTTCC":262958, "CTTCG":317825, "CTTGA":288894, "CTTGT":197676, "CTTGC":273814, "CTTGG":200954, + "CTCAA":237912, "CTCAT":183886, "CTCAC":150852, "CTCAG":181564, "CTCTA":105808, "CTCTT":211147, "CTCTC":118340, "CTCTG":178729, "CTCCA":227178, "CTCCT":144667, "CTCCC":113206, "CTCCG":140768, "CTCGA":221683, "CTCGT":166731, "CTCGC":236687, "CTCGG":209026, + "CTGAA":397987, "CTGAT":395423, "CTGAC":289711, "CTGAG":181926, "CTGTA":193495, "CTGTT":332342, "CTGTC":199123, "CTGTG":189988, "CTGCA":399075, "CTGCT":484623, "CTGCC":358398, "CTGCG":407221, "CTGGA":391054, "CTGGT":399803, "CTGGC":596431, "CTGGG":316204, + "CCAAA":237135, "CCAAT":204445, "CCAAC":249383, "CCAAG":205041, "CCATA":180562, "CCATT":266931, "CCATC":348354, "CCATG":285067, "CCACA":210454, "CCACT":179416, "CCACC":368144, "CCACG":273868, "CCAGA":313236, "CCAGT":310106, "CCAGC":671957, "CCAGG":432317, + "CCTAA":95845, "CCTAT":105915, "CCTAC":112487, "CCTAG":36270, "CCTTA":124678, "CCTTT":245789, "CCTTC":266746, "CCTTG":276218, "CCTCA":162585, "CCTCT":134215, "CCTCC":128783, "CCTCG":226594, "CCTGA":333410, "CCTGT":241009, "CCTGC":482683, "CCTGG":430802, + "CCCAA":155932, "CCCAT":186050, "CCCAC":184366, "CCCAG":315836, "CCCTA":71688, "CCCTT":169324, "CCCTC":124817, "CCCTG":316977, "CCCCA":173090, "CCCCT":134441, "CCCCC":119161, "CCCCG":182232, "CCCGA":173273, "CCCGT":162712, "CCCGC":311837, "CCCGG":262869, + "CCGAA":243436, "CCGAT":264165, "CCGAC":255471, "CCGAG":209363, "CCGTA":156316, "CCGTT":247305, "CCGTC":249293, "CCGTG":249252, "CCGCA":307700, "CCGCT":324807, "CCGCC":497014, "CCGCG":364525, "CCGGA":229292, "CCGGT":287518, "CCGGC":483773, "CCGGG":263694, + "CGAAA":280648, "CGAAT":192544, "CGAAC":267698, "CGAAG":322303, "CGATA":255620, "CGATT":227988, "CGATC":321959, "CGATG":399096, "CGACA":266041, "CGACT":162975, "CGACC":290367, "CGACG":298767, "CGAGA":173624, "CGAGT":132642, "CGAGC":286420, "CGAGG":228705, + "CGTAA":184250, "CGTAT":183057, "CGTAC":145019, "CGTAG":145271, "CGTTA":197795, "CGTTT":277592, "CGTTC":248508, "CGTTG":302087, "CGTCA":284516, "CGTCT":203926, "CGTCC":168263, "CGTCG":295924, "CGTGA":229763, "CGTGT":133959, "CGTGC":267899, "CGTGG":272635, + "CGCAA":277053, "CGCAT":265778, "CGCAC":255927, "CGCAG":409600, "CGCTA":161797, "CGCTT":296152, "CGCTC":247605, "CGCTG":605396, "CGCCA":556853, "CGCCT":357619, "CGCCC":363010, "CGCCG":612593, "CGCGA":297660, "CGCGT":233212, "CGCGC":514861, "CGCGG":364259, + "CGGAA":249703, "CGGAT":228534, "CGGAC":143590, "CGGAG":145392, "CGGTA":235729, "CGGTT":250943, "CGGTC":239747, "CGGTG":404096, "CGGCA":473444, "CGGCT":301794, "CGGCC":434177, "CGGCG":614154, "CGGGA":164594, "CGGGT":233444, "CGGGC":328428, "CGGGG":183030, + "GAAAA":486944, "GAAAT":372928, "GAAAC":285102, "GAAAG":289470, "GAATA":258910, "GAATT":247539, "GAATC":198912, "GAATG":229150, "GAACA":335035, "GAACT":274864, "GAACC":213654, "GAACG":253241, "GAAGA":398170, "GAAGT":263506, "GAAGC":333986, "GAAGG":271276, + "GATAA":329158, "GATAT":294109, "GATAC":198658, "GATAG":177844, "GATTA":221904, "GATTT":361733, "GATTC":196852, "GATTG":254011, "GATCA":346234, "GATCT":242510, "GATCC":229567, "GATCG":346855, "GATGA":405626, "GATGT":278543, "GATGC":369514, "GATGG":348702, + "GACAA":228737, "GACAT":199431, "GACAC":149899, "GACAG":204383, "GACTA":102696, "GACTT":171866, "GACTC":106616, "GACTG":167099, "GACCA":282433, "GACCT":207308, "GACCC":156838, "GACCG":241548, "GACGA":255075, "GACGT":166685, "GACGC":267194, "GACGG":227418, + "GAGAA":234415, "GAGAT":208948, "GAGAC":107682, "GAGAG":123162, "GAGTA":129220, "GAGTT":190554, "GAGTC":104875, "GAGTG":125497, "GAGCA":316706, "GAGCT":203329, "GAGCC":179540, "GAGCG":252881, "GAGGA":171558, "GAGGT":163937, "GAGGC":195537, "GAGGG":126241, + "GTAAA":277674, "GTAAT":228629, "GTAAC":172598, "GTAAG":136959, "GTATA":132919, "GTATT":249581, "GTATC":196497, "GTATG":181130, "GTACA":175587, "GTACT":177732, "GTACC":166989, "GTACG":144033, "GTAGA":148408, "GTAGT":145747, "GTAGC":170116, "GTAGG":112287, + "GTTAA":247464, "GTTAT":242506, "GTTAC":169794, "GTTAG":115772, "GTTTA":237697, "GTTTT":393090, "GTTTC":274300, "GTTTG":256847, "GTTCA":320687, "GTTCT":244598, "GTTCC":206118, "GTTCG":263970, "GTTGA":323599, "GTTGT":247429, "GTTGC":314619, "GTTGG":244048, + "GTCAA":223768, "GTCAT":244337, 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"ATGCC":308448, "ATGCG":250277, "ATGGA":230159, "ATGGT":273058, "ATGGC":354919, "ATGGG":180996, + "ACAAA":384756, "ACAAT":243620, "ACAAC":339836, "ACAAG":223582, "ACATA":193345, "ACATT":230106, "ACATC":303581, "ACATG":189560, "ACACA":249760, "ACACT":157943, "ACACC":329641, "ACACG":171119, "ACAGA":235446, "ACAGT":177054, "ACAGC":350543, "ACAGG":252600, + "ACTAA":160440, "ACTAT":165927, "ACTAC":170997, "ACTAG":56210, "ACTTA":149850, "ACTTT":250412, "ACTTC":266972, "ACTTG":162698, "ACTCA":185257, "ACTCT":135274, "ACTCC":147305, "ACTCG":141332, "ACTGA":233401, "ACTGT":167529, "ACTGC":252833, "ACTGG":282750, + "ACCAA":310216, "ACCAT":297971, "ACCAC":363760, "ACCAG":407217, "ACCTA":117409, "ACCTT":257533, "ACCTC":184318, "ACCTG":354571, "ACCCA":259917, "ACCCT":196173, "ACCCC":277509, "ACCCG":277357, "ACCGA":263049, "ACCGT":247506, "ACCGC":391798, "ACCGG":319028, + "ACGAA":259515, "ACGAT":252168, "ACGAC":221501, "ACGAG":167013, "ACGTA":144076, "ACGTT":232390, "ACGTC":179114, "ACGTG":168830, "ACGCA":247305, "ACGCT":254990, "ACGCC":390944, "ACGCG":246492, "ACGGA":187561, "ACGGT":243731, "ACGGC":340677, "ACGGG":179148, + "AGAAA":383548, "AGAAT":236327, "AGAAC":293296, "AGAAG":285679, "AGATA":241373, "AGATT":280745, "AGATC":330227, "AGATG":247052, "AGACA":176234, "AGACT":119234, "AGACC":211879, "AGACG":169085, "AGAGA":195667, "AGAGT":189682, "AGAGC":281771, "AGAGG":160125, + "AGTAA":201717, "AGTAT":173000, "AGTAC":184546, "AGTAG":123901, "AGTTA":182073, "AGTTT":251587, "AGTTC":243754, "AGTTG":214915, "AGTCA":166890, "AGTCT":109692, "AGTCC":120308, "AGTCG":162058, "AGTGA":188116, "AGTGT":214877, "AGTGC":180779, "AGTGG":180306, + "AGCAA":329407, "AGCAT":271558, "AGCAC":305585, "AGCAG":446112, "AGCTA":136995, "AGCTT":242684, "AGCTC":202504, "AGCTG":359373, "AGCCA":305697, "AGCCT":213369, "AGCCC":270947, "AGCCG":315737, "AGCGA":270044, "AGCGT":320048, "AGCGC":465831, "AGCGG":334833, + "AGGAA":259696, "AGGAT":212165, "AGGAC":143946, "AGGAG":153622, "AGGTA":178837, "AGGTT":224404, "AGGTC":202654, "AGGTG":258337, "AGGCA":212965, "AGGCT":200066, "AGGCC":320327, "AGGCG":341507, "AGGGA":215181, "AGGGT":192176, "AGGGC":257166, "AGGGG":157517, + "TAAAA":484840, "TAAAT":324927, "TAAAC":266870, "TAAAG":291425, "TAATA":278973, "TAATT":262047, "TAATC":227131, "TAATG":256350, "TAACA":250285, "TAACT":187046, "TAACC":214460, "TAACG":208024, "TAAGA":220505, "TAAGT":144320, "TAAGC":170516, "TAAGG":133499, + "TATAA":239478, "TATAT":212698, "TATAC":145178, "TATAG":125889, "TATTA":270023, "TATTT":372039, "TATTC":254079, "TATTG":253511, "TATCA":321542, "TATCT":223015, "TATCC":206076, "TATCG":245221, "TATGA":209436, "TATGT":153528, "TATGC":176225, "TATGG":175107, + "TACAA":228703, "TACAT":192259, "TACAC":171837, "TACAG":204036, "TACTA":123734, "TACTT":195487, "TACTC":136854, "TACTG":217283, "TACCA":240655, "TACCT":179633, "TACCC":178580, "TACCG":238991, "TACGA":157069, "TACGT":136260, "TACGC":197453, "TACGG":161990, + "TAGAA":174204, "TAGAT":181485, "TAGAC":96899, "TAGAG":115304, "TAGTA":118794, "TAGTT":151340, "TAGTC":104236, "TAGTG":163103, "TAGCA":147855, "TAGCT":134019, "TAGCC":158764, "TAGCG":164289, "TAGGA":83157, "TAGGT":107838, "TAGGC":105447, "TAGGG":148459, + "TTAAA":408413, "TTAAT":332310, "TTAAC":266123, "TTAAG":228217, "TTATA":230060, "TTATT":384751, "TTATC":319203, "TTATG":218132, "TTACA":199651, "TTACT":196343, "TTACC":260384, "TTACG":188341, "TTAGA":146501, "TTAGT":177391, "TTAGC":172836, "TTAGG":105664, + "TTTAA":381270, "TTTAT":418460, "TTTAC":281353, "TTTAG":199787, "TTTTA":427967, "TTTTT":648335, "TTTTC":450745, "TTTTG":371641, "TTTCA":424785, "TTTCT":358280, "TTTCC":304153, "TTTCG":271861, "TTTGA":316594, "TTTGT":282418, "TTTGC":319272, "TTTGG":224654, + "TTCAA":368867, "TTCAT":394181, "TTCAC":293558, "TTCAG":364670, "TTCTA":163234, "TTCTT":394212, "TTCTC":225592, "TTCTG":323321, "TTCCA":314694, "TTCCT":245094, "TTCCC":222024, "TTCCG":233012, "TTCGA":245444, "TTCGT":236970, "TTCGC":309424, "TTCGG":239093, + "TTGAA":354101, "TTGAT":393406, "TTGAC":222012, "TTGAG":225507, "TTGTA":195460, "TTGTT":331610, "TTGTC":216113, "TTGTG":188266, "TTGCA":260380, "TTGCT":306536, "TTGCC":348270, "TTGCG":261353, "TTGGA":158155, "TTGGT":255465, "TTGGC":289428, "TTGGG":150380, + "TCAAA":339780, "TCAAT":314383, "TCAAC":338152, "TCAAG":262267, "TCATA":217864, "TCATT":319918, "TCATC":392431, "TCATG":260457, "TCACA":188752, "TCACT":192852, "TCACC":388038, "TCACG":234434, "TCAGA":227334, "TCAGT":224956, "TCAGC":432936, "TCAGG":316801, + "TCTAA":142078, "TCTAT":161106, "TCTAC":152548, "TCTAG":55836, "TCTTA":147722, "TCTTT":365274, "TCTTC":360063, "TCTTG":221310, "TCTCA":151710, "TCTCT":164323, "TCTCC":180423, "TCTCG":183339, "TCTGA":213861, "TCTGT":186988, "TCTGC":301524, "TCTGG":295187, + "TCCAA":177098, "TCCAT":236427, "TCCAC":236546, "TCCAG":377343, "TCCTA":78877, "TCCTT":201467, "TCCTC":179894, "TCCTG":303147, "TCCCA":173312, "TCCCT":141439, "TCCCC":214368, "TCCCG":200545, "TCCGA":131756, "TCCGT":153786, "TCCGC":262582, "TCCGG":238913, + "TCGAA":248214, "TCGAT":298689, "TCGAC":271384, "TCGAG":210450, "TCGTA":151000, "TCGTT":239837, "TCGTC":246075, "TCGTG":230932, "TCGCA":191494, "TCGCT":257620, "TCGCC":469923, "TCGCG":292837, "TCGGA":209008, "TCGGT":260962, "TCGGC":408039, "TCGGG":195338, + "TGAAA":425931, "TGAAT":303054, "TGAAC":324255, "TGAAG":357611, "TGATA":305710, "TGATT":346089, "TGATC":321531, "TGATG":445862, "TGACA":203180, "TGACT":161987, "TGACC":311446, "TGACG":278561, "TGAGA":153400, "TGAGT":162812, "TGAGC":259182, "TGAGG":160806, + "TGTAA":198327, "TGTAT":193308, "TGTAC":178073, "TGTAG":231977, "TGTTA":255022, "TGTTT":324747, "TGTTC":316340, "TGTTG":309007, "TGTCA":193612, "TGTCT":142418, "TGTCC":169704, "TGTCG":255673, "TGTGA":155387, "TGTGT":139700, "TGTGC":196346, "TGTGG":195042, + "TGCAA":266059, "TGCAT":238861, "TGCAC":244390, "TGCAG":383386, "TGCTA":140944, "TGCTT":270113, "TGCTC":270882, "TGCTG":590773, "TGCCA":311204, "TGCCT":205206, "TGCCC":316007, "TGCCG":465253, "TGCGA":176564, "TGCGT":216455, "TGCGC":450924, "TGCGG":291613, + "TGGAA":303748, "TGGAT":270415, "TGGAC":188426, "TGGAG":207758, "TGGTA":227711, "TGGTT":292234, "TGGTC":288948, "TGGTG":408777, "TGGCA":305176, "TGGCT":282147, "TGGCC":437332, "TGGCG":515725, "TGGGA":151603, "TGGGT":200156, "TGGGC":290591, "TGGGG":173486, + "CAAAA":454031, "CAAAT":275602, "CAAAC":321176, "CAAAG":288914, "CAATA":284319, "CAATT":237403, "CAATC":268628, "CAATG":266190, "CAACA":406717, "CAACT":241294, "CAACC":347148, "CAACG":322184, "CAAGA":257757, "CAAGT":167037, "CAAGC":292593, "CAAGG":272681, + "CATAA":246336, "CATAT":210385, "CATAC":183739, "CATAG":149069, "CATTA":282115, "CATTT":314343, "CATTC":237389, "CATTG":260943, "CATCA":478538, "CATCT":250349, "CATCC":302781, "CATCG":379870, "CATGA":267809, "CATGT":183354, "CATGC":271627, "CATGG":275088, + "CACAA":271004, "CACAT":209070, "CACAC":243196, "CACAG":224274, "CACTA":144039, "CACTT":204562, "CACTC":153467, "CACTG":240822, "CACCA":495721, "CACCT":286167, "CACCC":381205, "CACCG":432828, "CACGA":216127, "CACGT":175257, "CACGC":336853, "CACGG":273992, + "CAGAA":354035, "CAGAT":321217, "CAGAC":244795, "CAGAG":202934, "CAGTA":225131, "CAGTT":302309, "CAGTC":173757, "CAGTG":230932, "CAGCA":620769, "CAGCT":364804, "CAGCC":454450, "CAGCG":579383, "CAGGA":306199, "CAGGT":347320, "CAGGC":488122, "CAGGG":321088, + "CTAAA":210677, "CTAAT":144599, "CTAAC":138793, "CTAAG":96226, "CTATA":129120, "CTATT":173267, "CTATC":178618, "CTATG":140478, "CTACA":178153, "CTACT":121254, "CTACC":179379, "CTACG":149415, "CTAGA":59501, "CTAGT":49492, "CTAGC":66918, "CTAGG":46830, + "CTTAA":179904, "CTTAT":179002, "CTTAC":149152, "CTTAG":94311, "CTTTA":290407, "CTTTT":368180, "CTTTC":291496, "CTTTG":270850, "CTTCA":363760, "CTTCT":279971, "CTTCC":287543, "CTTCG":309293, "CTTGA":260232, "CTTGT":196604, "CTTGC":274607, "CTTGG":197738, + "CTCAA":238442, "CTCAT":186059, "CTCAC":174152, "CTCAG":181271, "CTCTA":110349, "CTCTT":212528, "CTCTC":127719, "CTCTG":178798, "CTCCA":221315, "CTCCT":155887, "CTCCC":171839, "CTCCG":161546, "CTCGA":210071, "CTCGT":150247, "CTCGC":246228, "CTCGG":230057, + "CTGAA":369023, "CTGAT":373612, "CTGAC":290397, "CTGAG":178658, "CTGTA":198745, "CTGTT":325696, "CTGTC":202779, "CTGTG":185817, "CTGCA":387846, "CTGCT":437247, "CTGCC":391736, "CTGCG":386044, "CTGGA":369514, "CTGGT":381898, "CTGGC":573511, "CTGGG":300428, + "CCAAA":271115, "CCAAT":213168, "CCAAC":310824, "CCAAG":217539, "CCATA":193296, "CCATT":273724, "CCATC":359663, "CCATG":285178, "CCACA":271313, "CCACT":201440, "CCACC":498182, "CCACG":309471, "CCAGA":327473, "CCAGT":284648, "CCAGC":674030, "CCAGG":426434, + "CCTAA":108728, "CCTAT":110207, "CCTAC":132570, "CCTAG":45643, "CCTTA":137148, "CCTTT":261164, "CCTTC":288250, "CCTTG":274194, "CCTCA":182480, "CCTCT":146153, "CCTCC":194130, "CCTCG":240284, "CCTGA":329691, "CCTGT":246259, "CCTGC":488970, "CCTGG":423825, + "CCCAA":210566, "CCCAT":212023, "CCCAC":312218, "CCCAG":352775, "CCCTA":90543, "CCCTT":201394, "CCCTC":183246, "CCCTG":348064, "CCCCA":299154, "CCCCT":204129, "CCCCC":549768, "CCCCG":320138, "CCCGA":216596, "CCCGT":197527, "CCCGC":444389, "CCCGG":344605, + "CCGAA":267182, "CCGAT":265311, "CCGAC":290040, "CCGAG":211736, "CCGTA":182272, "CCGTT":262026, "CCGTC":251154, "CCGTG":255525, "CCGCA":350217, "CCGCT":338874, "CCGCC":632864, "CCGCG":399033, "CCGGA":264012, "CCGGT":310616, "CCGGC":541320, "CCGGG":295648, + "CGAAA":291112, "CGAAT":190808, "CGAAC":285807, "CGAAG":313226, "CGATA":250195, "CGATT":225155, "CGATC":312940, "CGATG":371928, "CGACA":278338, "CGACT":165211, "CGACC":318811, "CGACG":308285, "CGAGA":179135, "CGAGT":139027, "CGAGC":283696, "CGAGG":221987, + "CGTAA":193321, "CGTAT":172035, "CGTAC":157936, "CGTAG":156388, "CGTTA":206986, "CGTTT":281608, "CGTTC":256534, "CGTTG":296429, "CGTCA":281011, "CGTCT":163017, "CGTCC":203390, "CGTCG":352467, "CGTGA":228469, "CGTGT":190540, "CGTGC":265268, "CGTGG":272208, + "CGCAA":290523, "CGCAT":262492, "CGCAC":295034, "CGCAG":409494, "CGCTA":166800, "CGCTT":293650, "CGCTC":252052, "CGCTG":572531, "CGCCA":566006, "CGCCT":364530, "CGCCC":504839, "CGCCG":667096, "CGCGA":293445, "CGCGT":250672, "CGCGC":522398, "CGCGG":376319, + "CGGAA":350984, "CGGAT":225620, "CGGAC":173420, "CGGAG":156989, "CGGTA":241446, "CGGTT":256540, "CGGTC":250282, "CGGTG":414196, "CGGCA":473262, "CGGCT":294013, "CGGCC":495059, "CGGCG":603656, "CGGGA":187061, "CGGGT":250429, "CGGGC":343287, "CGGGG":210517, + "GAAAA":493802, "GAAAT":345434, "GAAAC":301298, "GAAAG":359908, "GAATA":263741, "GAATT":243596, "GAATC":197937, "GAATG":224774, "GAACA":357407, "GAACT":252302, "GAACC":237587, "GAACG":287839, "GAAGA":463555, "GAAGT":252815, "GAAGC":333448, "GAAGG":274059, + "GATAA":332373, "GATAT":285687, "GATAC":203250, "GATAG":179911, "GATTA":270334, "GATTT":351901, "GATTC":198801, "GATTG":245556, "GATCA":332286, "GATCT":247067, "GATCC":234606, "GATCG":377543, "GATGA":386674, "GATGT":265669, "GATGC":347797, "GATGG":329255, + "GACAA":245880, "GACAT":202326, "GACAC":176401, "GACAG":221444, "GACTA":112349, "GACTT":170311, "GACTC":112152, "GACTG":168287, "GACCA":291943, "GACCT":207708, "GACCC":193654, "GACCG":268108, "GACGA":260018, "GACGT":173200, "GACGC":276493, "GACGG":236539, + "GAGAA":238238, "GAGAT":218288, "GAGAC":118965, "GAGAG":141727, "GAGTA":140567, "GAGTT":190039, "GAGTC":110722, "GAGTG":175879, "GAGCA":288067, "GAGCT":198487, "GAGCC":192678, "GAGCG":328323, "GAGGA":173056, "GAGGT":163048, "GAGGC":193328, "GAGGG":167350, + "GTAAA":295562, "GTAAT":226724, "GTAAC":186645, "GTAAG":156386, "GTATA":140895, "GTATT":245157, "GTATC":205396, "GTATG":156285, "GTACA":188277, "GTACT":177283, "GTACC":176296, "GTACG":151131, "GTAGA":187311, "GTAGT":149510, "GTAGC":175789, "GTAGG":182067, + "GTTAA":316890, "GTTAT":240651, "GTTAC":179233, "GTTAG":124380, "GTTTA":246446, "GTTTT":389407, "GTTTC":275320, "GTTTG":249801, "GTTCA":317312, "GTTCT":241846, "GTTCC":218131, "GTTCG":259608, "GTTGA":312179, "GTTGT":243074, "GTTGC":306887, "GTTGG":236788, + "GTCAA":226897, "GTCAT":239154, "GTCAC":207462, "GTCAG":277560, "GTCTA":89786, "GTCTT":184489, "GTCTC":109151, "GTCTG":210118, "GTCCA":194664, "GTCCT":141151, "GTCCC":121904, "GTCCG":157859, "GTCGA":268675, "GTCGT":236639, "GTCGC":306047, "GTCGG":269647, + "GTGAA":286751, "GTGAT":302441, "GTGAC":198293, "GTGAG":148605, "GTGTA":225774, "GTGTT":273377, "GTGTC":151593, "GTGTG":142816, "GTGCA":235948, "GTGCT":267644, "GTGCC":251764, "GTGCG":236887, "GTGGA":211369, "GTGGT":306691, "GTGGC":324735, "GTGGG":186059, + "GCAAA":342231, "GCAAT":284835, "GCAAC":334785, "GCAAG":285845, "GCATA":184274, "GCATT":269079, "GCATC":356455, "GCATG":261540, "GCACA":238634, "GCACT":189885, "GCACC":391141, "GCACG":285827, "GCAGA":330718, "GCAGT":244423, "GCAGC":562801, "GCAGG":467139, + "GCTAA":177530, "GCTAT":183097, "GCTAC":173701, "GCTAG":64716, "GCTTA":165710, "GCTTT":338738, "GCTTC":322751, "GCTTG":268133, "GCTCA":257739, "GCTCT":181421, "GCTCC":192184, "GCTCG":268725, "GCTGA":429585, "GCTGT":310058, "GCTGC":557475, "GCTGG":620145, + "GCCAA":313317, "GCCAT":363479, "GCCAC":376845, "GCCAG":572204, "GCCTA":109184, "GCCTT":297002, "GCCTC":218168, "GCCTG":478524, "GCCCA":352463, "GCCCT":278480, "GCCCC":356432, "GCCCG":401880, "GCCGA":419335, "GCCGT":350165, "GCCGC":625694, "GCCGG":508499, + "GCGAA":303278, "GCGAT":342505, "GCGAC":290363, "GCGAG":233715, "GCGTA":201571, "GCGTT":305626, "GCGTC":324889, "GCGTG":301605, "GCGCA":465748, "GCGCT":429658, "GCGCC":613644, "GCGCG":501910, "GCGGA":246115, "GCGGT":345449, "GCGGC":578151, "GCGGG":323739, + "GGAAA":397527, "GGAAT":199419, "GGAAC":235583, "GGAAG":366995, "GGATA":201622, "GGATT":212328, "GGATC":218410, "GGATG":262684, "GGACA":187625, "GGACT":115688, "GGACC":122110, "GGACG":188748, "GGAGA":188176, "GGAGT":125462, "GGAGC":183695, "GGAGG":155696, + "GGTAA":268018, "GGTAT":206655, "GGTAC":172270, "GGTAG":180605, "GGTTA":213775, "GGTTT":294718, "GGTTC":215601, "GGTTG":273460, "GGTCA":303913, "GGTCT":175172, "GGTCC":122981, "GGTCG":305501, "GGTGA":359081, "GGTGT":247202, "GGTGC":347130, "GGTGG":379421, + "GGCAA":358133, "GGCAT":295754, "GGCAC":262772, "GGCAG":362893, "GGCTA":152169, "GGCTT":284679, "GGCTC":173367, "GGCTG":388596, "GGCCA":435396, "GGCCT":314482, "GGCCC":302454, "GGCCG":447888, "GGCGA":424720, "GGCGT":343610, "GGCGC":569837, "GGCGG":488919, + "GGGAA":284540, "GGGAT":184319, "GGGAC":109600, "GGGAG":133737, "GGGTA":176308, "GGGTT":220507, "GGGTC":163453, "GGGTG":248083, "GGGCA":283910, "GGGCT":218147, "GGGCC":247247, "GGGCG":359735, "GGGGA":157813, "GGGGT":163680, "GGGGC":218009, "GGGGG":152551 + }, + "overrepresented_sequences": { + } + }, + "command": "fastp --thread 1 --report_title fastp report for SRR17619849_Palapye_Effluent_wastewater_fastq.fastq.gz -i SRR17619849_Palapye_Effluent_wastewater_fastq.fastq.gz -o first.fastq.gz -I SRR17619849_Palapye_Effluent_wastewater_fastq_R2.fastq.gz -O second.fastq.gz -A --detect_adapter_for_pe -Q -L " +} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-02_fastp.tsv Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,2 @@ +total_reads_before_filtering total_read_pairs_before_filtering total_reads_after_filtering total_read_pairs_after_filtering total_bases_before_filtering total_bases_after_filtering read1_mean_length_before_filtering read1_mean_length_after_filtering read2_mean_length_before_filtering read2_mean_length_after_filtering q20_bases_before_filtering q20_bases_after_filtering q20_rate_before_filtering q20_rate_after_filtering q30_bases_before_filtering q30_bases_after_filtering q30_rate_before_filtering q30_rate_after_filtering gc_content_before_filtering gc_content_after_filtering adapter_trimmed_reads adapter_trimmed_bases +2489208 1244604 2489208 1244604 538461532 538461532 212 212 220 220 486388202 486388202 0.903292 0.903292 439107721 439107721 0.815486 0.815486 0.512001 0.512001 0 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-03_fastp.json Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,217 @@ +{ + "summary": { + "fastp_version": "0.23.2", + "sequencing": "single end (301 cycles)", + "before_filtering": { + "total_reads":1244604, + "total_bases":264186465, + "q20_bases":255540164, + "q30_bases":241718326, + "q20_rate":0.967272, + "q30_rate":0.914953, + "read1_mean_length":212, + "gc_content":0.510331 + }, + "after_filtering": { + "total_reads":1235772, + "total_bases":261796597, + "q20_bases":254528883, + "q30_bases":241070514, + "q20_rate":0.972239, + "q30_rate":0.920831, + "read1_mean_length":211, + "gc_content":0.511189 + } + }, + "filtering_result": { + "passed_filter_reads": 1235772, + "low_quality_reads": 8533, + "too_many_N_reads": 299, + "too_short_reads": 0, + "too_long_reads": 0 + }, + "duplication": { + "rate": 0.00158846 + }, + "read1_before_filtering": { + "total_reads": 1244604, + "total_bases": 264186465, + "q20_bases": 255540164, + "q30_bases": 241718326, + "total_cycles": 301, + "quality_curves": { + 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"ATGCC":335059, "ATGCG":265004, "ATGGA":235009, "ATGGT":284292, "ATGGC":374704, "ATGGG":186264, + "ACAAA":319471, "ACAAT":224072, "ACAAC":269023, "ACAAG":207430, "ACATA":168243, "ACATT":240596, "ACATC":286956, "ACATG":185989, "ACACA":166184, "ACACT":133170, "ACACC":260462, "ACACG":165137, "ACAGA":199339, "ACAGT":165136, "ACAGC":332141, "ACAGG":245407, + "ACTAA":140543, "ACTAT":159881, "ACTAC":152885, "ACTAG":43511, "ACTTA":139936, "ACTTT":245087, "ACTTC":265167, "ACTTG":161762, "ACTCA":171546, "ACTCT":129371, "ACTCC":148376, "ACTCG":134644, "ACTGA":231292, "ACTGT":161706, "ACTGC":250146, "ACTGG":289357, + "ACCAA":271861, "ACCAT":286917, "ACCAC":301226, "ACCAG":403856, "ACCTA":104334, "ACCTT":251172, "ACCTC":164767, "ACCTG":363599, "ACCCA":209789, "ACCCT":174558, "ACCCC":149630, "ACCCG":234406, "ACCGA":249298, "ACCGT":239687, "ACCGC":356117, "ACCGG":288554, + "ACGAA":245457, "ACGAT":253696, "ACGAC":200533, "ACGAG":149032, "ACGTA":135319, "ACGTT":230220, "ACGTC":191009, "ACGTG":162388, "ACGCA":229190, "ACGCT":258153, "ACGCC":354569, "ACGCG":235584, "ACGGA":150385, "ACGGT":240166, "ACGGC":332062, "ACGGG":164071, + "AGAAA":399397, "AGAAT":230099, "AGAAC":255931, "AGAAG":287839, "AGATA":229868, "AGATT":231199, "AGATC":262142, "AGATG":252477, "AGACA":153796, "AGACT":109067, "AGACC":181511, "AGACG":161940, "AGAGA":172779, "AGAGT":128279, "AGAGC":213634, "AGAGG":136930, + "AGTAA":193021, "AGTAT":169468, "AGTAC":178550, "AGTAG":113395, "AGTTA":174045, "AGTTT":250253, "AGTTC":248872, "AGTTG":223051, "AGTCA":186142, "AGTCT":107131, "AGTCC":113031, "AGTCG":161453, "AGTGA":185118, "AGTGT":124402, "AGTGC":180646, "AGTGG":177911, + "AGCAA":326340, "AGCAT":271993, "AGCAC":313560, "AGCAG":469471, "AGCTA":132454, "AGCTT":242765, "AGCTC":202650, "AGCTG":381806, "AGCCA":300750, "AGCCT":208409, "AGCCC":225794, "AGCCG":304350, "AGCGA":268924, "AGCGT":257540, "AGCGC":466307, "AGCGG":328236, + "AGGAA":246141, "AGGAT":220887, "AGGAC":134558, "AGGAG":147384, "AGGTA":176811, "AGGTT":225261, "AGGTC":207340, "AGGTG":271224, "AGGCA":209447, "AGGCT":208122, "AGGCC":319082, "AGGCG":361315, "AGGGA":125563, "AGGGT":173405, "AGGGC":250073, "AGGGG":136820, + "TAAAA":437663, "TAAAT":314764, "TAAAC":246549, "TAAAG":289803, "TAATA":270756, "TAATT":259012, "TAATC":224169, "TAATG":256752, "TAACA":216525, "TAACT":177601, "TAACC":196796, "TAACG":201020, "TAAGA":146191, "TAAGT":137742, "TAAGC":161480, "TAAGG":124565, + "TATAA":230041, "TATAT":210028, "TATAC":135585, "TATAG":121168, "TATTA":267461, "TATTT":370720, "TATTC":255807, "TATTG":261411, "TATCA":311275, "TATCT":225040, "TATCC":202489, "TATCG":253788, "TATGA":211871, "TATGT":154799, "TATGC":202492, "TATGG":177683, + "TACAA":205814, "TACAT":180752, "TACAC":145857, "TACAG":196533, "TACTA":115659, "TACTT":191259, "TACTC":129463, "TACTG":216738, "TACCA":226556, "TACCT":176359, "TACCC":153184, "TACCG":234698, "TACGA":150102, "TACGT":132019, "TACGC":192466, "TACGG":155948, + "TAGAA":164567, "TAGAT":142640, "TAGAC":86487, "TAGAG":106507, "TAGTA":112160, "TAGTT":145305, "TAGTC":101269, "TAGTG":115733, "TAGCA":138155, "TAGCT":130022, "TAGCC":151456, "TAGCG":163108, "TAGGA":72111, "TAGGT":102395, "TAGGC":102463, "TAGGG":70969, + "TTAAA":373699, "TTAAT":325007, "TTAAC":249466, "TTAAG":167333, "TTATA":226323, "TTATT":383987, "TTATC":324730, "TTATG":219638, "TTACA":184782, "TTACT":189317, "TTACC":250811, "TTACG":182055, "TTAGA":136579, "TTAGT":131484, "TTAGC":169073, "TTAGG":94825, + "TTTAA":371697, "TTTAT":421813, "TTTAC":274359, "TTTAG":193186, "TTTTA":424110, "TTTTT":645458, "TTTTC":446910, "TTTTG":379148, "TTTCA":424087, "TTTCT":360458, "TTTCC":286193, "TTTCG":272473, "TTTGA":325445, "TTTGT":286483, "TTTGC":324685, "TTTGG":230014, + "TTCAA":364791, "TTCAT":399595, "TTCAC":287158, "TTCAG":397317, "TTCTA":161035, "TTCTT":394810, "TTCTC":226591, "TTCTG":351915, "TTCCA":308218, "TTCCT":240560, "TTCCC":181177, "TTCCG":221781, "TTCGA":255009, "TTCGT":238075, "TTCGC":308436, "TTCGG":242007, + "TTGAA":387662, "TTGAT":408076, "TTGAC":222290, "TTGAG":234866, "TTGTA":195639, "TTGTT":335072, "TTGTC":218210, "TTGTG":193502, "TTGCA":263541, "TTGCT":315459, "TTGCC":345283, "TTGCG":272193, "TTGGA":159776, "TTGGT":261368, "TTGGC":299565, "TTGGG":152464, + "TCAAA":330380, "TCAAT":315917, "TCAAC":327642, "TCAAG":270033, "TCATA":213324, "TCATT":308736, "TCATC":402851, "TCATG":267398, "TCACA":188854, "TCACT":185740, "TCACC":378266, "TCACG":229991, "TCAGA":244759, "TCAGT":228882, "TCAGC":455235, "TCAGG":332184, + "TCTAA":136785, "TCTAT":161073, "TCTAC":147470, "TCTAG":47294, "TCTTA":143051, "TCTTT":365204, "TCTTC":388458, "TCTTG":224400, "TCTCA":147073, "TCTCT":164447, "TCTCC":170544, "TCTCG":188485, "TCTGA":240724, "TCTGT":186308, "TCTGC":332167, "TCTGG":308909, + "TCCAA":161528, "TCCAT":232765, "TCCAC":208472, "TCCAG":408184, "TCCTA":71200, "TCCTT":193731, "TCCTC":168404, "TCCTG":303693, "TCCCA":150534, "TCCCT":123209, "TCCCC":132654, "TCCCG":162341, "TCCGA":120989, "TCCGT":146625, "TCCGC":238432, "TCCGG":227117, + "TCGAA":259060, "TCGAT":319122, "TCGAC":280900, "TCGAG":222086, "TCGTA":172478, "TCGTT":237137, "TCGTC":248863, "TCGTG":190378, "TCGCA":181595, "TCGCT":263894, "TCGCC":448050, "TCGCG":295024, "TCGGA":145591, "TCGGT":247315, "TCGGC":424848, "TCGGG":171790, + "TGAAA":454217, "TGAAT":311663, "TGAAC":346326, "TGAAG":368154, "TGATA":309969, "TGATT":354580, "TGATC":344524, "TGATG":476008, "TGACA":195537, "TGACT":162378, "TGACC":314580, "TGACG":284123, "TGAGA":148864, "TGAGT":165094, "TGAGC":272477, "TGAGG":162571, + "TGTAA":182648, "TGTAT":193634, "TGTAC":173411, "TGTAG":155280, "TGTTA":205215, "TGTTT":327692, "TGTTC":322175, "TGTTG":321027, "TGTCA":190442, "TGTCT":142551, "TGTCC":161295, "TGTCG":260112, "TGTGA":156778, "TGTGT":137048, "TGTGC":204558, "TGTGG":201320, + "TGCAA":265394, "TGCAT":244411, "TGCAC":239888, "TGCAG":399137, "TGCTA":135991, "TGCTT":292521, "TGCTC":286770, "TGCTG":637004, "TGCCA":312839, "TGCCT":204120, "TGCCC":272674, "TGCCG":494843, "TGCGA":181158, "TGCGT":224774, "TGCGC":483183, "TGCGG":305485, + "TGGAA":312926, "TGGAT":286441, "TGGAC":187512, "TGGAG":206367, "TGGTA":223187, "TGGTT":296369, "TGGTC":277622, "TGGTG":440876, "TGGCA":315435, "TGGCT":295360, "TGGCC":437361, "TGGCG":556604, "TGGGA":150184, "TGGGT":205856, "TGGGC":305181, "TGGGG":172431, + "CAAAA":404566, "CAAAT":265583, "CAAAC":270571, "CAAAG":283025, "CAATA":271167, "CAATT":233564, "CAATC":259518, "CAATG":270993, "CAACA":341947, "CAACT":229402, "CAACC":283844, "CAACG":308033, "CAAGA":235138, "CAAGT":163534, "CAAGC":282520, "CAAGG":280941, + "CATAA":228454, "CATAT":206320, "CATAC":163484, "CATAG":144837, "CATTA":258120, "CATTT":311458, "CATTC":254111, "CATTG":267329, "CATCA":480729, "CATCT":251136, "CATCC":276972, "CATCG":397188, "CATGA":270876, "CATGT":181478, "CATGC":272340, "CATGG":287662, + "CACAA":213353, "CACAT":212018, "CACAC":179537, "CACAG":198744, "CACTA":122821, "CACTT":195601, "CACTC":128665, "CACTG":235304, "CACCA":447865, "CACCT":271306, "CACCC":248610, "CACCG":405773, "CACGA":196951, "CACGT":187910, "CACGC":305121, "CACGG":251952, + "CAGAA":363274, "CAGAT":309088, "CAGAC":221341, "CAGAG":182873, "CAGTA":219062, "CAGTT":310729, "CAGTC":190102, "CAGTG":232939, "CAGCA":644932, "CAGCT":380942, "CAGCC":413170, "CAGCG":606332, "CAGGA":307640, "CAGGT":363134, "CAGGC":501970, "CAGGG":320271, + "CTAAA":199061, "CTAAT":138452, "CTAAC":120471, "CTAAG":87528, "CTATA":123119, "CTATT":171773, "CTATC":176656, "CTATG":143355, "CTACA":161241, "CTACT":114707, "CTACC":161472, "CTACG":145129, "CTAGA":49464, "CTAGT":41875, "CTAGC":56103, "CTAGG":36222, + "CTTAA":167324, "CTTAT":177656, "CTTAC":136928, "CTTAG":87229, "CTTTA":286150, "CTTTT":360991, "CTTTC":280334, "CTTTG":276672, "CTTCA":366730, "CTTCT":302898, "CTTCC":262958, "CTTCG":317825, "CTTGA":288894, "CTTGT":197676, "CTTGC":273814, "CTTGG":200954, + "CTCAA":237912, "CTCAT":183886, "CTCAC":150852, "CTCAG":181564, "CTCTA":105808, "CTCTT":211147, "CTCTC":118340, "CTCTG":178729, "CTCCA":227178, "CTCCT":144667, "CTCCC":113206, "CTCCG":140768, "CTCGA":221683, "CTCGT":166731, "CTCGC":236687, "CTCGG":209026, + "CTGAA":397987, "CTGAT":395423, "CTGAC":289711, "CTGAG":181926, "CTGTA":193495, "CTGTT":332342, "CTGTC":199123, "CTGTG":189988, "CTGCA":399075, "CTGCT":484623, "CTGCC":358398, "CTGCG":407221, "CTGGA":391054, "CTGGT":399803, "CTGGC":596431, "CTGGG":316204, + "CCAAA":237135, "CCAAT":204445, "CCAAC":249383, "CCAAG":205041, "CCATA":180562, "CCATT":266931, "CCATC":348354, "CCATG":285067, "CCACA":210454, "CCACT":179416, "CCACC":368144, "CCACG":273868, "CCAGA":313236, "CCAGT":310106, "CCAGC":671957, "CCAGG":432317, + "CCTAA":95845, "CCTAT":105915, "CCTAC":112487, "CCTAG":36270, "CCTTA":124678, "CCTTT":245789, "CCTTC":266746, "CCTTG":276218, "CCTCA":162585, "CCTCT":134215, "CCTCC":128783, "CCTCG":226594, "CCTGA":333410, "CCTGT":241009, "CCTGC":482683, "CCTGG":430802, + "CCCAA":155932, "CCCAT":186050, "CCCAC":184366, "CCCAG":315836, "CCCTA":71688, "CCCTT":169324, "CCCTC":124817, "CCCTG":316977, "CCCCA":173090, "CCCCT":134441, "CCCCC":119161, "CCCCG":182232, "CCCGA":173273, "CCCGT":162712, "CCCGC":311837, "CCCGG":262869, + "CCGAA":243436, "CCGAT":264165, "CCGAC":255471, "CCGAG":209363, "CCGTA":156316, "CCGTT":247305, "CCGTC":249293, "CCGTG":249252, "CCGCA":307700, "CCGCT":324807, "CCGCC":497014, "CCGCG":364525, "CCGGA":229292, "CCGGT":287518, "CCGGC":483773, "CCGGG":263694, + "CGAAA":280648, "CGAAT":192544, "CGAAC":267698, "CGAAG":322303, "CGATA":255620, "CGATT":227988, "CGATC":321959, "CGATG":399096, "CGACA":266041, "CGACT":162975, "CGACC":290367, "CGACG":298767, "CGAGA":173624, "CGAGT":132642, "CGAGC":286420, "CGAGG":228705, + "CGTAA":184250, "CGTAT":183057, "CGTAC":145019, "CGTAG":145271, "CGTTA":197795, "CGTTT":277592, "CGTTC":248508, "CGTTG":302087, "CGTCA":284516, "CGTCT":203926, "CGTCC":168263, "CGTCG":295924, "CGTGA":229763, "CGTGT":133959, "CGTGC":267899, "CGTGG":272635, + "CGCAA":277053, "CGCAT":265778, "CGCAC":255927, "CGCAG":409600, "CGCTA":161797, "CGCTT":296152, "CGCTC":247605, "CGCTG":605396, "CGCCA":556853, "CGCCT":357619, "CGCCC":363010, "CGCCG":612593, "CGCGA":297660, "CGCGT":233212, "CGCGC":514861, "CGCGG":364259, + "CGGAA":249703, "CGGAT":228534, "CGGAC":143590, "CGGAG":145392, "CGGTA":235729, "CGGTT":250943, "CGGTC":239747, "CGGTG":404096, "CGGCA":473444, "CGGCT":301794, "CGGCC":434177, "CGGCG":614154, "CGGGA":164594, "CGGGT":233444, "CGGGC":328428, "CGGGG":183030, + "GAAAA":486944, "GAAAT":372928, "GAAAC":285102, "GAAAG":289470, "GAATA":258910, "GAATT":247539, "GAATC":198912, "GAATG":229150, "GAACA":335035, "GAACT":274864, "GAACC":213654, "GAACG":253241, "GAAGA":398170, "GAAGT":263506, "GAAGC":333986, "GAAGG":271276, + "GATAA":329158, "GATAT":294109, "GATAC":198658, "GATAG":177844, "GATTA":221904, "GATTT":361733, "GATTC":196852, "GATTG":254011, "GATCA":346234, "GATCT":242510, "GATCC":229567, "GATCG":346855, "GATGA":405626, "GATGT":278543, "GATGC":369514, "GATGG":348702, + "GACAA":228737, "GACAT":199431, "GACAC":149899, "GACAG":204383, "GACTA":102696, "GACTT":171866, "GACTC":106616, "GACTG":167099, "GACCA":282433, "GACCT":207308, "GACCC":156838, "GACCG":241548, "GACGA":255075, "GACGT":166685, "GACGC":267194, "GACGG":227418, + "GAGAA":234415, "GAGAT":208948, "GAGAC":107682, "GAGAG":123162, "GAGTA":129220, "GAGTT":190554, "GAGTC":104875, "GAGTG":125497, "GAGCA":316706, "GAGCT":203329, "GAGCC":179540, "GAGCG":252881, "GAGGA":171558, "GAGGT":163937, "GAGGC":195537, "GAGGG":126241, + "GTAAA":277674, "GTAAT":228629, "GTAAC":172598, "GTAAG":136959, "GTATA":132919, "GTATT":249581, "GTATC":196497, "GTATG":181130, "GTACA":175587, "GTACT":177732, "GTACC":166989, "GTACG":144033, "GTAGA":148408, "GTAGT":145747, "GTAGC":170116, "GTAGG":112287, + "GTTAA":247464, "GTTAT":242506, "GTTAC":169794, "GTTAG":115772, "GTTTA":237697, "GTTTT":393090, "GTTTC":274300, "GTTTG":256847, "GTTCA":320687, "GTTCT":244598, "GTTCC":206118, "GTTCG":263970, "GTTGA":323599, "GTTGT":247429, "GTTGC":314619, "GTTGG":244048, + "GTCAA":223768, "GTCAT":244337, 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"AGGTC":206622, "AGGTG":270293, "AGGCA":207841, "AGGCT":207492, "AGGCC":318205, "AGGCG":360203, "AGGGA":124069, "AGGGT":172767, "AGGGC":249164, "AGGGG":135572, + "TAAAA":431548, "TAAAT":311678, "TAAAC":242506, "TAAAG":287717, "TAATA":266799, "TAATT":257264, "TAATC":221781, "TAATG":255256, "TAACA":210625, "TAACT":175070, "TAACC":194699, "TAACG":199460, "TAAGA":143584, "TAAGT":136476, "TAAGC":160047, "TAAGG":123728, + "TATAA":226290, "TATAT":207203, "TATAC":132220, "TATAG":119649, "TATTA":265288, "TATTT":369179, "TATTC":253999, "TATTG":260443, "TATCA":307854, "TATCT":223076, "TATCC":201060, "TATCG":252515, "TATGA":209815, "TATGT":153583, "TATGC":194673, "TATGG":177021, + "TACAA":200156, "TACAT":176935, "TACAC":140879, "TACAG":193994, "TACTA":112615, "TACTT":189497, "TACTC":127339, "TACTG":215401, "TACCA":223632, "TACCT":174749, "TACCC":151876, "TACCG":233665, "TACGA":148269, "TACGT":130855, "TACGC":191258, "TACGG":155272, + "TAGAA":161848, "TAGAT":140973, "TAGAC":84716, "TAGAG":105176, "TAGTA":110337, "TAGTT":144545, "TAGTC":100281, "TAGTG":114934, "TAGCA":136302, "TAGCT":129153, "TAGCC":150748, "TAGCG":162321, "TAGGA":70975, "TAGGT":101853, "TAGGC":101843, "TAGGG":70454, + "TTAAA":371136, "TTAAT":323180, "TTAAC":247405, "TTAAG":166325, "TTATA":224136, "TTATT":382268, "TTATC":323157, "TTATG":218511, "TTACA":182182, "TTACT":187730, "TTACC":249479, "TTACG":181275, "TTAGA":135457, "TTAGT":130737, "TTAGC":168369, "TTAGG":94404, + "TTTAA":370007, "TTTAT":420180, "TTTAC":272961, "TTTAG":192495, "TTTTA":422633, "TTTTT":643270, "TTTTC":445393, "TTTTG":378245, "TTTCA":422523, "TTTCT":358936, "TTTCC":285077, "TTTCG":271770, "TTTGA":324501, "TTTGT":285721, "TTTGC":323779, "TTTGG":229491, + "TTCAA":362781, "TTCAT":397727, "TTCAC":285053, "TTCAG":389637, "TTCTA":159518, "TTCTT":392916, "TTCTC":225118, "TTCTG":344753, "TTCCA":306709, "TTCCT":239350, "TTCCC":180184, "TTCCG":220907, "TTCGA":254166, "TTCGT":237324, "TTCGC":307668, "TTCGG":241344, + "TTGAA":380068, "TTGAT":406983, "TTGAC":221157, "TTGAG":234180, "TTGTA":194612, "TTGTT":334214, "TTGTC":217461, "TTGTG":192934, "TTGCA":262384, "TTGCT":314618, "TTGCC":344453, "TTGCG":271553, "TTGGA":159066, "TTGGT":260796, "TTGGC":298946, "TTGGG":152071, + "TCAAA":326458, "TCAAT":313309, "TCAAC":324003, "TCAAG":268345, "TCATA":209997, "TCATT":306934, "TCATC":400234, "TCATG":266013, "TCACA":177667, "TCACT":183028, "TCACC":375744, "TCACG":228459, "TCAGA":236249, "TCAGT":227554, "TCAGC":453642, "TCAGG":331297, + "TCTAA":134642, "TCTAT":159287, "TCTAC":145014, "TCTAG":46337, "TCTTA":141266, "TCTTT":363643, "TCTTC":380456, "TCTTG":223528, "TCTCA":144938, "TCTCT":162770, "TCTCC":169054, "TCTCG":182111, "TCTGA":232911, "TCTGT":185342, "TCTGC":324703, "TCTGG":308237, + "TCCAA":159439, "TCCAT":231037, "TCCAC":206150, "TCCAG":400481, "TCCTA":69916, "TCCTT":192598, "TCCTC":166925, "TCCTG":302759, "TCCCA":149071, "TCCCT":122171, "TCCCC":131536, "TCCCG":161611, "TCCGA":120067, "TCCGT":145850, "TCCGC":237497, "TCCGG":226447, + "TCGAA":257335, "TCGAT":318073, "TCGAC":279586, "TCGAG":221252, "TCGTA":164837, "TCGTT":236477, "TCGTC":247849, "TCGTG":189789, "TCGCA":180363, "TCGCT":263095, "TCGCC":447135, "TCGCG":294282, "TCGGA":138252, "TCGGT":246728, "TCGGC":423926, "TCGGG":171298, + "TGAAA":445032, "TGAAT":310041, "TGAAC":337499, "TGAAG":366548, "TGATA":308067, "TGATT":353503, "TGATC":343189, "TGATG":474783, "TGACA":192879, "TGACT":161184, "TGACC":313369, "TGACG":282846, "TGAGA":147244, "TGAGT":164221, "TGAGC":271501, "TGAGG":161787, + "TGTAA":180990, "TGTAT":192417, "TGTAC":172018, "TGTAG":154342, "TGTTA":204266, "TGTTT":326775, "TGTTC":321338, "TGTTG":320289, "TGTCA":189147, "TGTCT":141690, "TGTCC":160674, "TGTCG":259348, "TGTGA":155846, "TGTGT":136371, "TGTGC":203860, "TGTGG":200747, + "TGCAA":263513, "TGCAT":243057, "TGCAC":238063, "TGCAG":397605, "TGCTA":134976, "TGCTT":285550, "TGCTC":285880, "TGCTG":635690, "TGCCA":311649, "TGCCT":203354, "TGCCC":271921, "TGCCG":487442, "TGCGA":180307, "TGCGT":224080, "TGCGC":482283, "TGCGG":304764, + "TGGAA":311345, "TGGAT":285735, "TGGAC":186640, "TGGAG":205490, "TGGTA":222403, "TGGTT":295705, "TGGTC":277051, "TGGTG":440050, "TGGCA":314526, "TGGCT":294734, "TGGCC":436640, "TGGCG":555649, "TGGGA":149417, "TGGGT":205375, "TGGGC":304577, "TGGGG":171791, + "CAAAA":395268, "CAAAT":261271, "CAAAC":264083, "CAAAG":280193, "CAATA":266042, "CAATT":231541, "CAATC":256114, "CAATG":269165, "CAACA":332655, "CAACT":225698, "CAACC":280440, "CAACG":305577, "CAAGA":231332, "CAAGT":161517, "CAAGC":280338, "CAAGG":279684, + "CATAA":223539, "CATAT":202787, "CATAC":158952, "CATAG":143009, "CATTA":255677, "CATTT":309905, "CATTC":245698, "CATTG":266283, "CATCA":475844, "CATCT":248386, "CATCC":274865, "CATCG":395666, "CATGA":268445, "CATGT":180067, "CATGC":270726, "CATGG":286799, + "CACAA":204599, "CACAT":200358, "CACAC":164809, "CACAG":195356, "CACTA":118557, "CACTT":193548, "CACTC":125237, "CACTG":233671, "CACCA":442886, "CACCT":268781, "CACCC":246103, "CACCG":404042, "CACGA":194053, "CACGT":179576, "CACGC":303123, "CACGG":250744, + "CAGAA":352550, "CAGAT":306733, "CAGAC":218260, "CAGAG":180890, "CAGTA":216516, "CAGTT":309601, "CAGTC":182030, "CAGTG":231806, "CAGCA":641459, "CAGCT":379348, "CAGCC":411633, "CAGCG":604831, "CAGGA":305973, "CAGGT":362086, "CAGGC":500609, "CAGGG":319269, + "CTAAA":195860, "CTAAT":136292, "CTAAC":117662, "CTAAG":86322, "CTATA":120514, "CTATT":170295, "CTATC":174695, "CTATG":142307, "CTACA":156717, "CTACT":112329, "CTACC":159568, "CTACG":143906, "CTAGA":47853, "CTAGT":40801, "CTAGC":55142, "CTAGG":35760, + "CTTAA":165561, "CTTAT":175866, "CTTAC":135250, "CTTAG":86579, "CTTTA":284788, "CTTTT":359556, "CTTTC":279044, "CTTTG":275922, "CTTCA":364536, "CTTCT":294801, "CTTCC":261566, "CTTCG":316965, "CTTGA":281709, "CTTGT":196854, "CTTGC":272904, "CTTGG":200423, + "CTCAA":234967, "CTCAT":181539, "CTCAC":147952, "CTCAG":180360, "CTCTA":103863, "CTCTT":209548, "CTCTC":116636, "CTCTG":177848, "CTCCA":218530, "CTCCT":143094, "CTCCC":111802, "CTCCG":139853, "CTCGA":220418, "CTCGT":159745, "CTCGC":235799, "CTCGG":208412, + "CTGAA":389329, "CTGAT":394000, "CTGAC":288076, "CTGAG":181022, "CTGTA":192184, "CTGTT":331388, "CTGTC":198146, "CTGTG":189353, "CTGCA":397219, "CTGCT":477203, "CTGCC":357286, "CTGCG":406234, "CTGGA":389934, "CTGGT":399045, "CTGGC":595452, "CTGGG":315591, + "CCAAA":233718, "CCAAT":202193, "CCAAC":246072, "CCAAG":203609, "CCATA":178204, "CCATT":265329, "CCATC":346061, "CCATG":284025, "CCACA":205839, "CCACT":177076, "CCACC":365423, "CCACG":272402, "CCAGA":311192, "CCAGT":302441, "CCAGC":670161, "CCAGG":431233, + "CCTAA":94311, "CCTAT":104594, "CCTAC":110647, "CCTAG":35676, "CCTTA":123568, "CCTTT":244732, "CCTTC":265208, "CCTTG":275554, "CCTCA":160689, "CCTCT":132638, "CCTCC":127215, "CCTCG":225651, "CCTGA":332183, "CCTGT":240216, "CCTGC":481490, "CCTGG":430044, + "CCCAA":154003, "CCCAT":184513, "CCCAC":182014, "CCCAG":314678, "CCCTA":70634, "CCCTT":168339, "CCCTC":123403, "CCCTG":316262, "CCCCA":171294, "CCCCT":133298, "CCCCC":116817, "CCCCG":181266, "CCCGA":172420, "CCCGT":161886, "CCCGC":310749, "CCCGG":262090, + "CCGAA":241887, "CCGAT":263233, "CCGAC":254018, "CCGAG":208611, "CCGTA":155207, "CCGTT":246622, "CCGTC":241906, "CCGTG":248629, "CCGCA":306300, "CCGCT":323803, "CCGCC":495562, "CCGCG":363620, "CCGGA":228307, "CCGGT":286831, "CCGGC":482563, "CCGGG":263007, + "CGAAA":277628, "CGAAT":190930, "CGAAC":265512, "CGAAG":320720, "CGATA":253810, "CGATT":227175, "CGATC":320754, "CGATG":397984, "CGACA":263160, "CGACT":161574, "CGACC":289105, "CGACG":297517, "CGAGA":171931, "CGAGT":131794, "CGAGC":285333, "CGAGG":227809, + "CGTAA":182606, "CGTAT":175102, "CGTAC":143661, "CGTAG":144379, "CGTTA":196980, "CGTTT":276831, "CGTTC":247795, "CGTTG":301456, "CGTCA":282829, "CGTCT":190036, "CGTCC":167441, "CGTCG":295020, "CGTGA":228683, "CGTGT":133265, "CGTGC":267166, "CGTGG":272000, + "CGCAA":274948, "CGCAT":264379, "CGCAC":254087, "CGCAG":408249, "CGCTA":160800, "CGCTT":295296, "CGCTC":246716, "CGCTG":604318, "CGCCA":555283, "CGCCT":356570, "CGCCC":361928, "CGCCG":611352, "CGCGA":296542, "CGCGT":232469, "CGCGC":513782, "CGCGG":363355, + "CGGAA":241404, "CGGAT":227635, "CGGAC":142634, "CGGAG":144300, "CGGTA":234890, "CGGTT":250389, "CGGTC":239079, "CGGTG":403272, "CGGCA":472021, "CGGCT":300848, "CGGCC":433094, "CGGCG":612976, "CGGGA":163687, "CGGGT":232863, "CGGGC":327678, "CGGGG":182122, + "GAAAA":474276, "GAAAT":364467, "GAAAC":281433, "GAAAG":286223, "GAATA":256069, "GAATT":246356, "GAATC":197388, "GAATG":227554, "GAACA":329923, "GAACT":266523, "GAACC":212076, "GAACG":251224, "GAAGA":387819, "GAAGT":262026, "GAAGC":332281, "GAAGG":269376, + "GATAA":326374, "GATAT":292415, "GATAC":196721, "GATAG":176203, "GATTA":220781, "GATTT":360861, "GATTC":196081, "GATTG":253111, "GATCA":344038, "GATCT":241419, "GATCC":228770, "GATCG":339414, "GATGA":403690, "GATGT":277527, "GATGC":368424, "GATGG":347590, + "GACAA":224433, "GACAT":197119, "GACAC":146656, "GACAG":202029, "GACTA":101035, "GACTT":170910, "GACTC":105482, "GACTG":165929, "GACCA":280472, "GACCT":206310, "GACCC":156049, "GACCG":240543, "GACGA":253082, "GACGT":165550, "GACGC":266016, "GACGG":226257, + "GAGAA":231024, "GAGAT":207300, "GAGAC":105916, "GAGAG":120781, "GAGTA":127640, "GAGTT":189939, "GAGTC":104111, "GAGTG":124440, "GAGCA":307959, "GAGCT":202594, "GAGCC":178814, "GAGCG":251653, "GAGGA":169455, "GAGGT":163153, "GAGGC":194592, "GAGGG":124755, + "GTAAA":275206, "GTAAT":226986, "GTAAC":170651, "GTAAG":135547, "GTATA":131114, "GTATT":248435, "GTATC":195349, "GTATG":173382, "GTACA":173071, "GTACT":176462, "GTACC":166026, "GTACG":143065, "GTAGA":146822, "GTAGT":144828, "GTAGC":169233, "GTAGG":111426, + "GTTAA":246347, "GTTAT":241594, "GTTAC":168904, "GTTAG":115169, "GTTTA":236914, "GTTTT":392187, "GTTTC":273639, "GTTTG":256150, "GTTCA":319706, "GTTCT":243852, "GTTCC":205528, "GTTCG":263341, "GTTGA":322692, "GTTGT":246792, "GTTGC":313932, "GTTGG":243452, + "GTCAA":222011, "GTCAT":242935, "GTCAC":215369, "GTCAG":286342, "GTCTA":83307, "GTCTT":200002, "GTCTC":103320, "GTCTG":232211, "GTCCA":183909, "GTCCT":131048, "GTCCC":87025, "GTCCG":141148, "GTCGA":279453, "GTCGT":193308, "GTCGC":280945, "GTCGG":252606, + "GTGAA":285638, "GTGAT":317570, "GTGAC":199157, "GTGAG":147862, "GTGTA":137124, "GTGTT":230406, "GTGTC":142086, "GTGTG":137518, "GTGCA":236535, "GTGCT":281809, "GTGCC":248347, "GTGCG":250692, "GTGGA":206146, "GTGGT":292557, "GTGGC":338472, "GTGGG":181225, + "GCAAA":329709, "GCAAT":288856, "GCAAC":317771, "GCAAG":277760, "GCATA":178050, "GCATT":272104, "GCATC":366676, "GCATG":272629, "GCACA":227362, "GCACT":181823, "GCACC":367572, "GCACG":270816, "GCAGA":315607, "GCAGT":247199, "GCAGC":587195, "GCAGG":484003, + "GCTAA":169118, "GCTAT":186291, "GCTAC":169029, "GCTAG":55578, "GCTTA":158524, "GCTTT":342177, "GCTTC":327004, "GCTTG":290935, "GCTCA":269172, "GCTCT":183567, "GCTCC":177440, "GCTCG":281827, "GCTGA":453987, "GCTGT":323292, "GCTGC":582705, "GCTGG":672209, + "GCCAA":302541, "GCCAT":372689, "GCCAC":337625, "GCCAG":596965, "GCCTA":101376, "GCCTT":295174, "GCCTC":192085, "GCCTG":500335, "GCCCA":304330, "GCCCT":247286, "GCCCC":206929, "GCCCG":328692, "GCCGA":424360, "GCCGT":344554, "GCCGC":586154, "GCCGG":484338, + "GCGAA":311270, "GCGAT":366400, "GCGAC":282958, "GCGAG":239870, "GCGTA":192060, "GCGTT":309280, "GCGTC":263727, "GCGTG":302273, "GCGCA":486556, "GCGCT":461155, "GCGCC":592666, "GCGCG":513612, "GCGGA":239811, "GCGGT":354312, "GCGGC":585546, "GCGGG":311896, + "GGAAA":293713, "GGAAT":199077, "GGAAC":208640, "GGAAG":280816, "GGATA":201246, "GGATT":217965, "GGATC":228694, "GGATG":274093, "GGACA":164459, "GGACT":112552, "GGACC":102623, "GGACG":169914, "GGAGA":176549, "GGAGT":123370, "GGAGC":180632, "GGAGG":129157, + "GGTAA":250344, "GGTAT":211268, "GGTAC":166258, "GGTAG":160384, "GGTTA":193244, "GGTTT":297439, "GGTTC":211138, "GGTTG":279487, "GGTCA":311937, "GGTCT":178410, "GGTCC":101938, "GGTCG":287613, "GGTGA":377166, "GGTGT":251910, "GGTGC":364988, "GGTGG":367151, + "GGCAA":349337, "GGCAT":310571, "GGCAC":252589, "GGCAG":359319, "GGCTA":151430, "GGCTT":292473, "GGCTC":176800, "GGCTG":409159, "GGCCA":437165, "GGCCT":317019, "GGCCC":228068, "GGCCG":432263, "GGCGA":452267, "GGCGT":352161, "GGCGC":592992, "GGCGG":496467, + "GGGAA":183112, "GGGAT":187313, "GGGAC":87924, "GGGAG":114199, "GGGTA":152019, "GGGTT":206947, "GGGTC":155756, "GGGTG":245745, "GGGCA":273830, "GGGCT":223708, "GGGCC":227172, "GGGCG":361916, "GGGGA":134075, "GGGGT":147674, "GGGGC":206498, "GGGGG":116790 + }, + "overrepresented_sequences": { + } + }, + "command": "fastp --thread 1 --report_title fastp report for SRR17619849_Palapye_Effluent_wastewater_1_fastq_gz.fastq.gz -i SRR17619849_Palapye_Effluent_wastewater_1_fastq_gz.fastq.gz -o first.fastq.gz " +} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-03_fastp.tsv Thu Mar 10 21:59:56 2022 +0000 @@ -0,0 +1,2 @@ +total_reads_before_filtering total_read_pairs_before_filtering total_reads_after_filtering total_read_pairs_after_filtering total_bases_before_filtering total_bases_after_filtering read1_mean_length_before_filtering read1_mean_length_after_filtering read2_mean_length_before_filtering read2_mean_length_after_filtering q20_bases_before_filtering q20_bases_after_filtering q20_rate_before_filtering q20_rate_after_filtering q30_bases_before_filtering q30_bases_after_filtering q30_rate_before_filtering q30_rate_after_filtering gc_content_before_filtering gc_content_after_filtering adapter_trimmed_reads adapter_trimmed_bases +1244604 NA 1235772 NA 264186465 261796597 212 211 NA NA 255540164 254528883 0.967272 0.972239 241718326 241070514 0.914953 0.920831 0.510331 0.511189 0 0