Mercurial > repos > public-health-bioinformatics > match_plasmid_to_reference

annotate test-data/outdir/reference_plasmid.gbk @ 0:c917ef6807d7 draft default tip

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
author public-health-bioinformatics
date Tue, 12 Nov 2019 22:47:36 -0500
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c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
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1 LOCUS JQ739157 6544 bp DNA circular BCT 26-JUL-2016
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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2 DEFINITION Acinetobacter pittii strain ABCA95 plasmid pABCA95, complete
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
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3 sequence.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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4 ACCESSION JQ739157
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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5 VERSION JQ739157.2
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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6 KEYWORDS .
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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7 SOURCE Acinetobacter pittii
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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8 ORGANISM Acinetobacter pittii
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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9 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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10 Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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11 complex.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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12 REFERENCE 1 (bases 1 to 6544)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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13 AUTHORS Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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14 TITLE Epidemiological characteristics and genetic structure of blaNDM-1
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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15 in non-baumannii Acinetobacter spp. in China
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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16 JOURNAL J. Antimicrob. Chemother. 67 (9), 2114-2122 (2012)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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17 PUBMED 22604448
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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18 REFERENCE 2 (bases 1 to 6544)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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19 AUTHORS Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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20 TITLE Direct Submission
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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21 JOURNAL Submitted (05-MAR-2012) Department of Infectious Diseases, Sir Run
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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22 Run Shaw Hospital, Affiliated with School of Medicine, Zhejiang
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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23 University, 3 East Qingchun Road, Hangzhou, Zhejiang 310016, China
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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24 REFERENCE 3 (bases 1 to 6544)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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25 AUTHORS Fu,Y., Du,X., Ji,J., Chen,Y., Jiang,Y. and Yu,Y.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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26 TITLE Direct Submission
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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27 JOURNAL Submitted (12-MAY-2014) Department of Infectious Diseases, Sir Run
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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28 Run Shaw Hospital, Affiliated with School of Medicine, Zhejiang
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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29 University, 3 East Qingchun Road, Hangzhou, Zhejiang 310016, China
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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30 REMARK Sequence update by submitter
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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31 COMMENT On May 12, 2014 this sequence version replaced JQ739157.1.
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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32 FEATURES Location/Qualifiers
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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33 source 1..6544
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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34 /organism="Acinetobacter pittii"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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35 /mol_type="genomic DNA"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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36 /strain="ABCA95"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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37 /db_xref="taxon:48296"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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38 /plasmid="pABCA95"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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39 gene 375..1031
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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40 /gene="aphA6"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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41 misc_feature 375..1031
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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42 /gene="aphA6"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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43 /note="similar to aphA6; aminoglycoside
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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44 3'-phosphotransferase; 5' end of gene is missing"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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45 mobile_element 1129..2215
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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46 /mobile_element_type="insertion sequence:ISAba125"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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47 repeat_region 1138..1154
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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48 /note="IRL"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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49 /rpt_type=inverted
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50 CDS 1186..2211
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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51 /codon_start=1
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52 /transl_table=11
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53 /product="Transposase"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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54 /protein_id="AFK73837.1"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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55 /translation="MEYIKLSYHHLNFEDRTALMLESRKEGFSARKFAELIKRHPSTI
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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56 YRELKRNSINDVYQARYASDNTFARRRRGHRKLKIDSILWKFIVEAIRCLWSPQQIAK
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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57 RLKTFPDLDQTMNVSHTTIYSTIRALPKGELKKDLLSCLRHENKKRKANGEPKKDSIL
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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58 QDIKTIHERPAEVQERKIPGHWEADLIKGKDNKSSIATLIERNTRLCILATLPDAKAE
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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59 SVRKALTEALKYLPAELRKTLTYDRGREMSEHKILEEDLGIDVYFCDPHSPWQKGTCE
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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60 NMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALDWLTPLEKFAQLVDYHMAF
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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61 ETVAPHV"
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62 repeat_region 2190..2206
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63 /note="IRL"
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64 /rpt_type=inverted
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65 gene 2312..3124
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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66 /gene="blaNDM-1"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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67 CDS 2312..3124
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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68 /gene="blaNDM-1"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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69 /codon_start=1
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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70 /transl_table=11
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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71 /product="metallo-beta-lactamase"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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72 /protein_id="AFK73838.1"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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73 /translation="MELPNIMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQ
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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74 RFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQIL
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
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parents:
diff changeset
75 NWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHS
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
76 LTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSL
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
77 GNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
78 gene 3128..3493
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
79 /gene="bleo"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
80 CDS 3128..3493
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
81 /gene="bleo"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
82 /note="involved in resistance to bleomycin"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
83 /codon_start=1
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
84 /transl_table=11
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
85 /product="bleomycin resistance protein"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
86 /protein_id="AFK73839.1"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
87 /translation="MADHVTPNLPSRDFDVTEAFYAKLGFATSWKDRGWMILQRGGLQ
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
88 LEFFPYPDLDPATSSFGCCLRLDDLDAMVALVNAAGAEEKSTGWPRFKAPQLEASGLR
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
89 IGYLIDPDCTLVRLIQNPD"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
90 gene 3498..4133
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
91 /gene="trpF"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
92 misc_feature 3498..4133
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
93 /gene="trpF"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
94 /note="similar to TrpF; phosphoribosyl anthranilate
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
95 isomerase; 3' end not present"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
96 gene complement(4150..4830)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
97 /gene="tat"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
98 misc_feature complement(4150..4830)
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
99 /gene="tat"
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
100 /note="similar to TAT; twin-arginine translocation pathway
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
101 signal sequence protein; 5' end of gene is missing."
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
102 ORIGIN
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
103 1 aagcttatag cagtgtcaca gatgcgaaaa agcaattaag tgcatatttt gagttttata
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
104 61 atttgaaacg acctcattcg agtctagaca aaatgacacc aaatgagttt tactatgatc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
105 121 agctacccca acaaaacaag gtggcttaac tagagcggaa tatcacttat aaatacgctt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
106 181 ttagttgttc aaacaagtgg gaccacctct ctcgcatttg cggggttttt aatgctgaat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
107 241 aaaaggaaaa cttgatggaa ttgcccaata ttattcaaca atttattgga aacagcgttt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
108 301 tagagccaaa taaaattggt cagtcgccat cggatgttta ttcttttaat cgaaataatg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
109 361 aaactttttt tcttaagcga tctagcactt tatatacaga gaccacatac agtgtctctc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
110 421 gcgaagcgaa aatgttgagt tggctctctg agaaattaaa ggtgcctgaa ctcatcatga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
111 481 cttttcagga tgagcagttt gaattaatga tcactaaagc gatcaatgca aaaccaattt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
112 541 cagcgctttt tttaacagac caagaattgc ttgctatcta taaggaggca ctcaatctgt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
113 601 taaattcagt tgctattatt gattgtccat ttatttcaaa cattgatcat cggttaaaag
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
114 661 agtcaaaatt ttttattgat aaccaactcc ttgacgatat agatcaagat gattttgacg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
115 721 ctgaattatg gggagaccat agaacttacc taagtctatg gaatgagtta actgagactc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
116 781 gtgttgaaga aagattggtt ttttctcatg gcgatatcac ggatagtaat atttttatag
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
117 841 ataaattcaa tgaaatttac tttttagatc ttggccgtgc tgggttagct gatgaatttg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
118 901 tagatatatc ctttgttgaa cgttgcctaa gagaggatgc ctcggaggaa actgctaaaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
119 961 tatttttaaa gcatttaaaa aatgatagac ctgacaaaag gaattatttt ttaaaacttg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
120 1021 atgaattgaa ttgattctaa gcattatcta aaaatactta attgtctttt aacgtcgcta
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
121 1081 aattttaaat aaataagtga agagtgttag tggagccact gatttaaagt tggcagagta
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
122 1141 aaacttgaag tgcgacataa accacctaat taatttaaag ggtttatgga gtatataaaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
123 1201 ttgtcatacc atcatcttaa ctttgaagat cgtactgcat taatgcttga gtcaagaaaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
124 1261 gaaggctttt cagccagaaa atttgctgaa ctcattaaaa gacatcctag tacgatctat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
125 1321 cgtgagctta aaagaaatag catcaatgac gtttatcaag ctcgatatgc ttctgataac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
126 1381 accttcgcta gacgtagacg tggtcacaga aaactcaaaa tcgattcaat cctctggaaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
127 1441 tttattgttg aagcgatccg ttgtttatgg tctcctcagc aaatagcaaa gcgtttaaag
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
128 1501 acatttcctg atttggatca aacaatgaat gtaagccata caacgattta ttcaacgata
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
129 1561 cgagcattac caaagggtga gttgaaaaaa gacttattat cctgtctacg tcatgaaaat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
130 1621 aaaaagcgaa aagctaacgg tgaacctaaa aaagattcta tattacagga tattaaaact
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
131 1681 attcatgagc gcccagccga agttcaagaa agaaaaatac cgggtcattg ggaagctgat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
132 1741 ttaattaaag gtaaagacaa taaaagttcg atagcaacac ttattgaacg aaatacacgg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
133 1801 ctctgtatct tggcaacatt acctgatgca aaggcagaat cagtgcgcaa ggctttaact
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
134 1861 gaagctctga aatatttacc tgcagaactg cgtaaaacgt tgacctatga ccgtggacgt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
135 1921 gagatgtcag aacataaaat actcgaagaa gatttaggca tagatgtata tttctgtgac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
136 1981 ccacattcac cctggcaaaa aggcacatgc gaaaatatga atggtttaat taggcaatat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
137 2041 ttacctaaag ggattgattt aaatcaggca gatcagcatt atttaaatca agttgccatg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
138 2101 tcactgaata ctcgtcctag aaaggcgtta gattggctta caccattaga gaaatttgct
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
139 2161 cagcttgttg attatcatat ggcttttgaa actgtcgcac ctcatgtttg aattcgcccc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
140 2221 atatttttgc tacagtgaac caaattaaga tcatctattt actaggcctc gcatttgcgg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
141 2281 ggtttttaat gctgaataaa aggaaaactt gatggaattg cccaatatta tgcacccggt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
142 2341 cgcgaagctg agcaccgcat tagccgctgc attgatgctg agcgggtgca tgcccggtga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
143 2401 aatccgcccg acgattggcc agcaaatgga aactggcgac caacggtttg gcgatctggt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
144 2461 tttccgccag ctcgcaccga atgtctggca gcacacttcc tatctcgaca tgccgggttt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
145 2521 cggggcagtc gcttccaacg gtttgatcgt cagggatggc ggccgcgtgc tggtggtcga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
146 2581 taccgcctgg accgatgacc agaccgccca gatcctcaac tggatcaagc aggagatcaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
147 2641 cctgccggtc gcgctggcgg tggtgactca cgcgcatcag gacaagatgg gcggtatgga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
148 2701 cgcgctgcat gcggcgggga ttgcgactta tgccaatgcg ttgtcgaacc agcttgcccc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
149 2761 gcaagagggg atggttgcgg cgcaacacag cctgactttc gccgccaatg gctgggtcga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
150 2821 accagcaacc gcgcccaact ttggcccgct caaggtattt taccccggcc ccggccacac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
151 2881 cagtgacaat atcaccgttg ggatcgacgg caccgacatc gcttttggtg gctgcctgat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
152 2941 caaggacagc aaggccaagt cgctcggcaa tctcggtgat gccgacactg agcactacgc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
153 3001 cgcgtcagcg cgcgcgtttg gtgcggcgtt ccccaaggcc agcatgatcg tgatgagcca
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
154 3061 ttccgccccc gatagccgcg ccgcaatcac tcatacggcc cgcatggccg acaagctgcg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
155 3121 ctgagccatg gctgaccacg tcacccccaa tctgccatcg cgcgatttcg atgtgacaga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
156 3181 ggcgttttat gcgaagctgg gctttgcgac gagttggaag gatcgcggct ggatgatcct
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
157 3241 gcagcgcggc ggtttgcagc tcgaattctt cccctatcct gacctcgacc cagctacgag
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
158 3301 ctcgttcggc tgttgcctgc ggttggatga tctcgatgcc atggtggcat tggtgaacgc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
159 3361 ggcgggagcc gaggaaaaaa gcaccggctg gccgcgcttc aaagctccgc aactggaggc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
160 3421 gagcggcctg aggatcggct acctgatcga tcccgactgc acgctggtgc ggctgatcca
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
161 3481 gaaccccgac tgaccgcatg cccgcgaaaa tcaagatttg cgggatcagc acacccgagg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
162 3541 cgctcgatgc gaccatcgcg gcgcgggcgg actatgccgg gttggtgttc tatccagcgt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
163 3601 cgccccgtgc ggttacgtcg aatgtcgcgg gcgctttgac atcgcgcgca gctggccaga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
164 3661 tcgccatggt cggtttgttc gtcgatgcgg atgatgctgt catcgccgac gcactggtgg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
165 3721 cagccaagct gaacgcgctg cagctgcacg gttcggaatc gcccgaacgc gtggcccagt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
166 3781 tgcgcgcgcg gtttggcaag ccggtgtgga aggcgctgcc cgtcgccagc gccagcgatg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
167 3841 tcgcacgcgc cgcagcctat gccggggcgg cggacttgat cttgttcgac gccaagaccc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
168 3901 ccaaaggcgc gctgcccggc ggcatggggt tggcgttcga ctggtcgctg ctggccggat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
169 3961 atcgcggtgc cttgccgtgg gggctggcag gcgggctaaa tccgacgaat gttgccgagg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
170 4021 cgattgcgcg caccggagcg ccgctggtcg atacctccag cggcgtcgaa agcgcgccgg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
171 4081 gcgtcaagga taccgacaag attaccaatt tcgcctttgc ggtgcgcttg gcctaaatcg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
172 4141 cgtcgatcaa taggcgtcgt tcagcgcaaa gatcggcttg cgggtgcgcc actgccctcg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
173 4201 ggtgaagtcg ggaaaatcta acgtgcgatt gccctcagca atcgattgtt ccgacagagg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
174 4261 cgtgatcgcg ctccaggcca gcgcgtcgta aatgtcgatt ggcatcgggg ccttggcctt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
175 4321 cagcgcctcg acaaaagcgt ggatcacgaa ccagtccatc ccgccatgcc cggcccctgc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
176 4381 cgccagatcg gcgtagcgtt tccatagcgg gtgatcgtat ttcgcaaacc agccctcggc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
177 4441 aggctcccag cggtgcggct gtgggctctt gccctccaga tagatcgact tgttgacgtc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
178 4501 catccacagc ccctcggtgc cttgcacccg aaagccgaga gaataggggc gcggcagcga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
179 4561 ggtgtcgtgg cacagcatga tcgtttcacc attagtgcag ccgatcatgg tgttgaccac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
180 4621 atcacccagt gcgaatttca cctcggcgtt gggatgatcg gcagagccgt tcttgacgac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
181 4681 ataatcatgc agcccgcgcg ccttacagcc gaagccgcca gcgcccgctt cgcccggcaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
182 4741 cgcgaccttc agggtgcggg tctgcggcgg gtagcacacg ccggcatcgg cgcagccctg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
183 4801 gtacttcacg gtcagggtgg tcgcgctcgc gccggccgcg ggcgtgccgg tgagggtgcc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
184 4861 gagcaattcc ttgcggtagg tttcgacgtc gccgaagaat tcgtcgcggt aggccttgcc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
185 4921 cttcggcagc gccatggtcg cgccggtgaa ggcggcatcg gccttgaccg aggtgcggtg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
186 4981 ccggtacagg taatagccgt cggcgatccg ccagcgcacc tcgatgcggt ccggcgcggt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
187 5041 ggcctgcgcg gacaggacga agacctcgtc gaccggcggc agttcgaagt cctgggcgac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
188 5101 ggccgaggtc gcgggcagcg caagcagcag ggcgagcccg gccagccagc ggcgcaggcg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
189 5161 gatcgtggat gcggtcattg gctcagttta ccggtcggct ctcggcggcc agccattgca
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
190 5221 ggtattcggg caggccggac gcggcttcga ccgcgagcag ctccgggagt tcgtagggat
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
191 5281 atagtatttt attaaattct tatgggaaat gacgaatgtt aaattatctt aagagcttta
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
192 5341 ataatatcaa tacttatttg attttatcga taattctgct gttaatcata atatctctag
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
193 5401 attatttcta aactgaatga atgtttataa tgagtgattc atattgctat tgaaatcgcc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
194 5461 ttctcacttt gaaagaaggc gaggatgagg gacttttatg ttgaattatc attttaaaaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
195 5521 tgccttataa aagaagctta atgtgttttc ttatataggt ttaaacataa ttgttgtata
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
196 5581 tcttaaatcc aattgatctt aaaattttcc tttatttttt gttatgagtg cgagaaaatt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
197 5641 gtcaaaaagg tcaatcagac tgggcgttaa tttgttttgc atactttttc ctatatcgaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
198 5701 ttaaagtcat ataactaaca ccataatctt tagctatttg agtgaaaggg tatgaatcgt
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
199 5761 ccttattttt aagggtatga attaactctt ttagtttttc ttctgtaatc gcaggcgatc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
200 5821 ttcccttgta tttacctttc ttttttttag ctaatttaat tccctctgct tgattctcac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
201 5881 taataatacc cctttcaagt tcagctacag cgcctaatac atggagttga aacttatcga
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
202 5941 acttgtcatc tgaattgggg gtaaagttca ggttattttt gacaatatga acagacactc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
203 6001 cttttttatt tagcttttga acaatggtta caaggtcaat caagctacgt gccaatctaa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
204 6061 aaacatcatg agcgtacaca atgtccccac tacggacata atcgaacatt tcctgaagtg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
205 6121 cagggcgttt ggcagtcttt ccgctaaaat gatcaataaa agttttatct agctcaaagg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
206 6181 gtagatcatg gagctgtctt tcagggtttt ggtctttagt ggatacacgg atatacccca
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
207 6241 ctctttgaaa gggtgtgttt ttaatttgat cttcaatatc taaattttct ttttccataa
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
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208 6301 ccagtataac aaaattagat aacctcaatg ttatatcaca ttagattaac aaaacaaccc
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
209 6361 tattgttata gggtttttag ggtgtattat tatataacaa tagggtatac cctattgtta
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
210 6421 tatatcttca ggtataagga aaaataacga tgattaattt taatgatcta agcgaatctg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
211 6481 aattattaag gattgcacag actggcatat caaaccgtat aggattgcgt acttcaggac
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
212 6541 attg
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
parents:
diff changeset
213 //
c917ef6807d7 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/match_plasmid_to_reference commit 0f3fff91eb329adf437224eb8f7449853083b01e"
public-health-bioinformatics
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214