Mercurial > repos > public-health-bioinformatics > pick_plasmids_containing_genes

annotate abricate_report_screening_files.loc.sample @ 0:62019f5116f8 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
author public-health-bioinformatics
date Tue, 12 Nov 2019 22:20:54 -0500
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0
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
1 # Expect three columns, tab separated, as follows:
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
4 # - path (Path to the abricate report screening file (tsv format))
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
5 #
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
6 # e.g.
62019f5116f8 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/pick_plasmids_containing_genes commit af16cdb29dcdc9ad2ff1effb5cf4e23a8c98a764"
public-health-bioinformatics
parents:
diff changeset
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv