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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
author q2d2
date Sat, 01 Nov 2025 17:07:46 +0000
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bc76d21f1948 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
bc76d21f1948 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
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3 Copyright (c) 2025, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2025.10.0)
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10 for:
bc76d21f1948 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
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11 qiime2 (version: 2025.10.0)
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12 -->
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13 <tool name="qiime2 boots beta-average" id="qiime2__boots__beta_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
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14 <description>Average beta diversity distance matrices.</description>
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15 <xrefs>
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16 <xref type="bio.tools">qiime2</xref>
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17 </xrefs>
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18 <requirements>
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19 <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
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20 </requirements>
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21 <version_command>q2galaxy version boots</version_command>
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22 <command detect_errors="exit_code">q2galaxy run boots beta_average '$inputs'</command>
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23 <configfiles>
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24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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25 </configfiles>
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26 <inputs>
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27 <param name="data" type="data" format="qza" label="data: Collection[DistanceMatrix]" help="[required] Distance matrices to be average." multiple="true">
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28 <options options_filter_attribute="metadata.semantic_type">
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29 <filter type="add_value" value="DistanceMatrix"/>
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30 </options>
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31 </param>
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32 <param name="average_method" type="select" label="average_method: Str % Choices('non-metric-mean', 'non-metric-median', 'medoid')" display="radio">
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33 <option value="__q2galaxy__::literal::None">Selection required</option>
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34 <option value="non-metric-mean">non-metric-mean</option>
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35 <option value="non-metric-median">non-metric-median</option>
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36 <option value="medoid">medoid</option>
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37 <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
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38 </param>
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39 </inputs>
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40 <outputs>
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41 <data name="average_distance_matrix" format="qza" label="${tool.name} on ${on_string}: average_distance_matrix.qza" from_work_dir="average_distance_matrix.qza"/>
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42 </outputs>
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43 <tests/>
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44 <help>
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45 QIIME 2: boots beta-average
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46 ===========================
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47 Average beta diversity distance matrices.
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48
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49
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50 Outputs:
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51 --------
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52 :average_distance_matrix.qza: The average distance matrix.
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53
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54 |
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55
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56 Description:
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57 ------------
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58 Compute the average distance matrix across a collection of distance matrices.
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59
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60
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61 |
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62
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63 </help>
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64 <citations>
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65 <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation>
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66 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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67 </citations>
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68 </tool>