<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2025, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.10.0)
for:
    qiime2 (version: 2025.10.0)
-->
<tool name="qiime2 boots beta-average" id="qiime2__boots__beta_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Average beta diversity distance matrices.</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
    </requirements>
    <version_command>q2galaxy version boots</version_command>
    <command detect_errors="exit_code">q2galaxy run boots beta_average '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="qza" label="data: Collection[DistanceMatrix]" help="[required]  Distance matrices to be average." multiple="true">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="DistanceMatrix"/>
            </options>
        </param>
        <param name="average_method" type="select" label="average_method: Str % Choices('non-metric-mean', 'non-metric-median', 'medoid')" display="radio">
            <option value="__q2galaxy__::literal::None">Selection required</option>
            <option value="non-metric-mean">non-metric-mean</option>
            <option value="non-metric-median">non-metric-median</option>
            <option value="medoid">medoid</option>
            <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
        </param>
    </inputs>
    <outputs>
        <data name="average_distance_matrix" format="qza" label="${tool.name} on ${on_string}: average_distance_matrix.qza" from_work_dir="average_distance_matrix.qza"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: boots beta-average
===========================
Average beta diversity distance matrices.


Outputs:
--------
:average_distance_matrix.qza: The average distance matrix.

|  

Description:
------------
Compute the average distance matrix across a collection of distance matrices.


|  

</help>
    <citations>
        <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>