Mercurial > repos > q2d2 > qiime2__boots__beta_average
comparison qiime2__boots__beta_average.xml @ 0:bc76d21f1948 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
| author | q2d2 |
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| date | Sat, 01 Nov 2025 17:07:46 +0000 |
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| -1:000000000000 | 0:bc76d21f1948 |
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| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2025, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2025.10.0) | |
| 10 for: | |
| 11 qiime2 (version: 2025.10.0) | |
| 12 --> | |
| 13 <tool name="qiime2 boots beta-average" id="qiime2__boots__beta_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description>Average beta diversity distance matrices.</description> | |
| 15 <xrefs> | |
| 16 <xref type="bio.tools">qiime2</xref> | |
| 17 </xrefs> | |
| 18 <requirements> | |
| 19 <container type="docker">quay.io/qiime2/amplicon:2025.10</container> | |
| 20 </requirements> | |
| 21 <version_command>q2galaxy version boots</version_command> | |
| 22 <command detect_errors="exit_code">q2galaxy run boots beta_average '$inputs'</command> | |
| 23 <configfiles> | |
| 24 <inputs name="inputs" data_style="staging_path_and_source_path"/> | |
| 25 </configfiles> | |
| 26 <inputs> | |
| 27 <param name="data" type="data" format="qza" label="data: Collection[DistanceMatrix]" help="[required] Distance matrices to be average." multiple="true"> | |
| 28 <options options_filter_attribute="metadata.semantic_type"> | |
| 29 <filter type="add_value" value="DistanceMatrix"/> | |
| 30 </options> | |
| 31 </param> | |
| 32 <param name="average_method" type="select" label="average_method: Str % Choices('non-metric-mean', 'non-metric-median', 'medoid')" display="radio"> | |
| 33 <option value="__q2galaxy__::literal::None">Selection required</option> | |
| 34 <option value="non-metric-mean">non-metric-mean</option> | |
| 35 <option value="non-metric-median">non-metric-median</option> | |
| 36 <option value="medoid">medoid</option> | |
| 37 <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator> | |
| 38 </param> | |
| 39 </inputs> | |
| 40 <outputs> | |
| 41 <data name="average_distance_matrix" format="qza" label="${tool.name} on ${on_string}: average_distance_matrix.qza" from_work_dir="average_distance_matrix.qza"/> | |
| 42 </outputs> | |
| 43 <tests/> | |
| 44 <help> | |
| 45 QIIME 2: boots beta-average | |
| 46 =========================== | |
| 47 Average beta diversity distance matrices. | |
| 48 | |
| 49 | |
| 50 Outputs: | |
| 51 -------- | |
| 52 :average_distance_matrix.qza: The average distance matrix. | |
| 53 | |
| 54 | | |
| 55 | |
| 56 Description: | |
| 57 ------------ | |
| 58 Compute the average distance matrix across a collection of distance matrices. | |
| 59 | |
| 60 | |
| 61 | | |
| 62 | |
| 63 </help> | |
| 64 <citations> | |
| 65 <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation> | |
| 66 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 67 </citations> | |
| 68 </tool> |