Mercurial > repos > q2d2 > qiime2__composition__add_pseudocount
changeset 2:f92a9f40c7e1 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
|---|---|
| date | Thu, 08 Jun 2023 19:34:36 +0000 |
| parents | c6780899249e |
| children | d6677599b512 |
| files | qiime2__composition__add_pseudocount.xml test-data/ancombc.test0.metadata.tsv test-data/ancombc.test0.table.qza test-data/ancombc.test1.metadata.tsv test-data/ancombc.test1.table.qza |
| diffstat | 5 files changed, 14 insertions(+), 9 deletions(-) [+] |
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--- a/qiime2__composition__add_pseudocount.xml Fri Jan 13 22:04:34 2023 +0000 +++ b/qiime2__composition__add_pseudocount.xml Thu Jun 08 19:34:36 2023 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 composition add-pseudocount" id="qiime2__composition__add_pseudocount" version="2022.11.2+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> - <description>Add pseudocount to table</description> +<tool name="qiime2 composition add-pseudocount" id="qiime2__composition__add_pseudocount" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> + <description>Add pseudocount to table.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version composition</version_command> <command detect_errors="exit_code">q2galaxy run composition add_pseudocount '$inputs'</command> @@ -38,7 +38,7 @@ <help> QIIME 2: composition add-pseudocount ==================================== -Add pseudocount to table +Add pseudocount to table. Outputs: @@ -56,7 +56,6 @@ </help> <citations> - <citation type="doi">10.3402/mehd.v26.27663</citation> <citation type="doi">10.1038/s41587-019-0209-9</citation> </citations> </tool>
--- a/test-data/ancombc.test0.metadata.tsv Fri Jan 13 22:04:34 2023 +0000 +++ b/test-data/ancombc.test0.metadata.tsv Thu Jun 08 19:34:36 2023 +0000 @@ -1,5 +1,5 @@ sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn -#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical +#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z @@ -34,3 +34,6 @@ L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z +L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value +L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value +L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value
--- a/test-data/ancombc.test1.metadata.tsv Fri Jan 13 22:04:34 2023 +0000 +++ b/test-data/ancombc.test1.metadata.tsv Thu Jun 08 19:34:36 2023 +0000 @@ -1,5 +1,5 @@ sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn -#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical +#q2:types categorical categorical categorical numeric categorical categorical categorical categorical categorical L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z @@ -34,3 +34,6 @@ L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z +L6SD93 GCGTTACACACA toe 3 17 subject-2 dog test1 value +L6SD20 GAACTGTATCTC toe 4 14 subject-2 bird test2 value +L6SD68 CTGGACTCATAG toe 10 28 subject-2 cow test1 value