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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 19:26:13 +0000
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c16aced36a6d planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2022, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2022.8.1)
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10 for:
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11 qiime2 (version: 2022.8.1)
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12 -->
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13 <tool name="qiime2 deblur visualize-stats" id="qiime2__deblur__visualize_stats" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Visualize Deblur stats per sample.</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2022.8</container>
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17 </requirements>
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18 <version_command>q2galaxy version deblur</version_command>
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19 <command detect_errors="aggressive">q2galaxy run deblur visualize_stats '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="paths"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="deblur_stats" type="data" format="qza" label="deblur_stats: DeblurStats" help="[required] Summary statistics of the Deblur process.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="DeblurStats"/>
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27 </options>
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28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DeblurStats']</validator>
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29 </param>
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30 </inputs>
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31 <outputs>
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32 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
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33 </outputs>
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34 <tests/>
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35 <help>
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36 QIIME 2: deblur visualize-stats
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37 ===============================
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38 Visualize Deblur stats per sample.
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39
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40
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41 Outputs:
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42 --------
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43 :visualization.qzv: &lt;no description&gt;
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44
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45 |
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46
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47 Description:
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48 ------------
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49 Display Deblur statistics per sample
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50
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51
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52 |
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53
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54 </help>
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55 <citations>
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56 <citation type="bibtex">@article{cite1,
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57 author = {Amir, Amnon and McDonald, Daniel and Navas-Molina, Jose A and Kopylova, Evguenia and Morton, James T and Xu, Zhenjiang Zech and Kightley, Eric P and Thompson, Luke R and Hyde, Embriette R and Gonzalez, Antonio and Knight, Rob},
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58 journal = {MSystems},
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59 number = {2},
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60 pages = {e00191--16},
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61 publisher = {Am Soc Microbiol},
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62 title = {Deblur rapidly resolves single-nucleotide community sequence patterns},
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63 volume = {2},
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64 year = {2017}
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65 }
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66 </citation>
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67 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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68 </citations>
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69 </tool>