Mercurial > repos > q2d2 > qiime2__deblur__visualize_stats
changeset 1:e62bac3eb4af draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 69da7976573cc07a363ac66bdacc9269d7cd3732
| author | q2d2 |
|---|---|
| date | Fri, 13 Jan 2023 22:42:44 +0000 |
| parents | c16aced36a6d |
| children | 0be892a57bfe |
| files | qiime2__deblur__visualize_stats.xml test-data/.gitkeep test-data/denoise_16S.test0.demux-filtered.qza test-data/visualize_stats.test0.deblur-stats.qza |
| diffstat | 3 files changed, 39 insertions(+), 7 deletions(-) [+] |
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--- a/qiime2__deblur__visualize_stats.xml Mon Aug 29 19:26:13 2022 +0000 +++ b/qiime2__deblur__visualize_stats.xml Fri Jan 13 22:42:44 2023 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2022, QIIME 2 development team. +Copyright (c) 2023, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.8.1) + q2galaxy (version: 2022.11.1) for: - qiime2 (version: 2022.8.1) + qiime2 (version: 2022.11.1) --> -<tool name="qiime2 deblur visualize-stats" id="qiime2__deblur__visualize_stats" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 deblur visualize-stats" id="qiime2__deblur__visualize_stats" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> <description>Visualize Deblur stats per sample.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.8</container> + <container type="docker">quay.io/qiime2/core:2022.11</container> </requirements> <version_command>q2galaxy version deblur</version_command> - <command detect_errors="aggressive">q2galaxy run deblur visualize_stats '$inputs'</command> + <command detect_errors="exit_code">q2galaxy run deblur visualize_stats '$inputs'</command> <configfiles> <inputs name="inputs" data_style="paths"/> </configfiles> @@ -31,7 +31,18 @@ <outputs> <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> </outputs> - <tests/> + <tests> + <test> + <param name="deblur_stats" value="visualize_stats.test0.deblur-stats.qza" ftype="qza"/> + <output name="visualization" ftype="qzv"> + <assert_contents> + <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> + <has_line_matching expression="type: Visualization"/> + </has_archive_member> + </assert_contents> + </output> + </test> + </tests> <help> QIIME 2: deblur visualize-stats =============================== @@ -48,6 +59,27 @@ ------------ Display Deblur statistics per sample +Examples: +--------- + +visualize_stats +*************** +Using the ``qiime2 deblur visualize-stats`` tool: + #. Set *"deblur_stats"* to ``#: deblur-stats.qza`` + #. Press the ``Execute`` button. + +Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows: + (Renaming is optional, but it will make any subsequent steps easier to complete.) + + .. list-table:: + :align: left + :header-rows: 1 + + * - History Name + - *"Name"* to set (be sure to press ``Save``) + * - ``#: qiime2 deblur visualize-stats [...] : visualization.qzv`` + - ``deblur-stats-viz.qzv`` + |