Mercurial > repos > q2d2 > qiime2__demux__partition_samples_paired

annotate qiime2__demux__partition_samples_paired.xml @ 2:002ddf3e5bb1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:37:41 +0000
parents c8df367887ca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
1 <?xml version='1.0' encoding='utf-8'?>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
2 <!--
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
3 Copyright (c) 2024, QIIME 2 development team.
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
4
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
6 -->
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
7 <!--
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
8 This tool was automatically generated by:
2
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
9 q2galaxy (version: 2024.10.0)
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
10 for:
2
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
11 qiime2 (version: 2024.10.1)
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
12 -->
2
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
13 <tool name="qiime2 demux partition-samples-paired" id="qiime2__demux__partition_samples_paired" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
14 <description>Split demultiplexed sequence data into partitions.</description>
2
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
15 <xrefs>
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
16 <xref type="bio.tools">qiime2</xref>
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
17 </xrefs>
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
18 <requirements>
2
002ddf3e5bb1 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 5f71b597c9495eae67a447744fded834f56ca1f7
q2d2
parents: 1
diff changeset
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
0
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
20 </requirements>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
21 <version_command>q2galaxy version demux</version_command>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
22 <command detect_errors="exit_code">q2galaxy run demux partition_samples_paired '$inputs'</command>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
23 <configfiles>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
25 </configfiles>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
26 <inputs>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
27 <param name="demux" type="data" format="qza" label="demux: SampleData[PairedEndSequencesWithQuality]" help="[required] The demultiplexed sequences to partition.">
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
28 <options options_filter_attribute="metadata.semantic_type">
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
29 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
30 </options>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]']</validator>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
32 </param>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
34 <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional] The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
35 </section>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
36 </inputs>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
37 <outputs>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
38 <collection name="partitioned_demux" type="list">
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
39 <discover_datasets directory="partitioned_demux" pattern="__name_and_ext__"/>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
40 </collection>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
41 </outputs>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
42 <tests/>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
43 <help>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
44 QIIME 2: demux partition-samples-paired
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
45 =======================================
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
46 Split demultiplexed sequence data into partitions.
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
47
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
48
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
49 Outputs:
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
50 --------
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
51 :partitioned_demux.qza: The partitioned demultiplexed sequences.
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
52
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
53 |
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
54
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
55 Description:
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
56 ------------
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
57 Partition demultiplexed paired end sequences into individual samples or the number of partitions specified.
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
58
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
59
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
60 |
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
61
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
62 </help>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
63 <citations>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
64 <citation type="doi">10.1038/s41587-019-0209-9</citation>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
65 </citations>
7a834db5d93a planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
diff changeset
66 </tool>