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author q2d2
date Mon, 03 Jun 2024 23:18:20 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
1
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9 q2galaxy (version: 2024.5.0)
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10 for:
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11 qiime2 (version: 2024.5.0)
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12 -->
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13 <tool name="qiime2 demux partition-samples-single" id="qiime2__demux__partition_samples_single" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
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14 <description>Split demultiplexed sequence data into partitions.</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
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17 </requirements>
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18 <version_command>q2galaxy version demux</version_command>
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19 <command detect_errors="exit_code">q2galaxy run demux partition_samples_single '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="demux" type="data" format="qza" label="demux: SampleData[SequencesWithQuality]" help="[required] The demultiplexed sequences to partition.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
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27 </options>
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28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[SequencesWithQuality]']</validator>
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29 </param>
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30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
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31 <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional] The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/>
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32 </section>
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33 </inputs>
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34 <outputs>
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35 <collection name="partitioned_demux" type="list">
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36 <discover_datasets directory="partitioned_demux" pattern="__name_and_ext__"/>
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37 </collection>
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38 </outputs>
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39 <tests/>
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40 <help>
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41 QIIME 2: demux partition-samples-single
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42 =======================================
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43 Split demultiplexed sequence data into partitions.
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44
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45
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46 Outputs:
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47 --------
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48 :partitioned_demux.qza: The partitioned demultiplexed sequences.
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49
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50 |
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52 Description:
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53 ------------
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54 Partition demultiplexed single end sequences into individual samples or the number of partitions specified.
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55
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57 |
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59 </help>
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60 <citations>
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61 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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62 </citations>
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63 </tool>