Mercurial > repos > q2d2 > qiime2__feature_classifier__classify_hybrid_vsearch_sklearn
changeset 7:86aee04ba532 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
| author | q2d2 |
|---|---|
| date | Tue, 15 Jul 2025 21:55:45 +0000 |
| parents | 26c3d6bc0754 |
| children | |
| files | qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml |
| diffstat | 1 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml Mon May 05 18:49:43 2025 +0000 +++ b/qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml Tue Jul 15 21:55:45 2025 +0000 @@ -6,17 +6,17 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2025.4.0) + q2galaxy (version: 2025.7.0) for: - qiime2 (version: 2025.4.0) + qiime2 (version: 2025.7.0) --> -<tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause"> <description>ALPHA Hybrid classifier: VSEARCH exact match + sklearn classifier</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2025.4</container> + <container type="docker">quay.io/qiime2/amplicon:2025.7</container> </requirements> <version_command>q2galaxy version feature_classifier</version_command> <command detect_errors="exit_code">q2galaxy run feature_classifier classify_hybrid_vsearch_sklearn '$inputs'</command> @@ -116,10 +116,11 @@ <param name="confidence" type="float" min="0" max="1" value="0.7" label="confidence: Float % Range(0, 1, inclusive_end=True)" help="[default: 0.7] Confidence threshold for limiting taxonomic depth. Set to "disable" to disable confidence calculation, or 0 to calculate confidence but not apply it to limit the taxonomic depth of the assignments."/> </when> </conditional> - <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto')" display="radio"> + <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto', 'both')" display="radio"> <option value="same">same</option> <option value="reverse-complement">reverse-complement</option> <option value="auto" selected="true">auto</option> + <option value="both">both</option> </param> <param name="prefilter" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="prefilter: Bool" help="[default: Yes] Toggle positive filter of query sequences on or off."/> <param name="sample_size" type="integer" min="1" value="1000" label="sample_size: Int % Range(1, None)" help="[default: 1000] Randomly extract the given number of sequences from the reference database to use for prefiltering. This parameter is ignored if `prefilter` is disabled."/>