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author | q2d2 |
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date | Mon, 03 Jun 2024 23:24:13 +0000 |
parents | e2f6444dd8b4 |
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<?xml version='1.0' encoding='utf-8'?> <!-- Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: q2galaxy (version: 2024.5.0) for: qiime2 (version: 2024.5.0) --> <tool name="qiime2 feature-classifier find-consensus-annotation" id="qiime2__feature_classifier__find_consensus_annotation" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> <description>Find consensus among multiple annotations.</description> <requirements> <container type="docker">quay.io/qiime2/amplicon:2024.5</container> </requirements> <version_command>q2galaxy version feature_classifier</version_command> <command detect_errors="exit_code">q2galaxy run feature_classifier find_consensus_annotation '$inputs'</command> <configfiles> <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="search_results" type="data" format="qza" label="search_results: FeatureData[BLAST6]" help="[required] Search results in BLAST6 output format"> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="FeatureData[BLAST6]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[BLAST6]']</validator> </param> <param name="reference_taxonomy" type="data" format="qza" label="reference_taxonomy: FeatureData[Taxonomy]" help="[required] reference taxonomy labels."> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="FeatureData[Taxonomy]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Taxonomy]']</validator> </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="min_consensus" type="float" min="0.500001" max="1.0" value="0.51" label="min_consensus: Float % Range(0.5, 1.0, inclusive_start=False, inclusive_end=True)" help="[default: 0.51] Minimum fraction of assignments must match top hit to be accepted as consensus assignment."/> <param name="unassignable_label" type="text" value="Unassigned" label="unassignable_label: Str" help="[default: 'Unassigned'] Annotation given when no consensus is found."> <sanitizer> <valid initial="string.printable"/> </sanitizer> </param> </section> </inputs> <outputs> <data name="consensus_taxonomy" format="qza" label="${tool.name} on ${on_string}: consensus_taxonomy.qza" from_work_dir="consensus_taxonomy.qza"/> </outputs> <tests/> <help> QIIME 2: feature-classifier find-consensus-annotation ===================================================== Find consensus among multiple annotations. Outputs: -------- :consensus_taxonomy.qza: Consensus taxonomy and scores. | Description: ------------ Find consensus annotation for each query searched against a reference database, by finding the least common ancestor among one or more semicolon-delimited hierarchical annotations. Note that the annotation hierarchy is assumed to have an even number of ranks. | </help> <citations> <citation type="doi">10.1186/s40168-018-0470-z</citation> <citation type="doi">10.1038/s41587-019-0209-9</citation> </citations> </tool>