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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
author q2d2
date Wed, 28 Jan 2026 16:28:44 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
2 <!--
3 Copyright (c) 2026, QIIME 2 development team.
4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 -->
7 <!--
8 This tool was automatically generated by:
9 q2galaxy (version: 2026.1.0)
10 for:
11 qiime2 (version: 2026.1.0)
12 -->
13 <tool name="qiime2 feature-table -summarize" id="qiime2__feature_table___summarize" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
14 <description>Summarize table helper</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
20 </requirements>
21 <version_command>q2galaxy version feature_table</version_command>
22 <command detect_errors="exit_code">q2galaxy run feature_table _summarize '$inputs'</command>
23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles>
26 <inputs>
27 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | PresenceAbsence]" help="[required] The feature table to be summarized.">
28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureTable[Frequency]"/>
30 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
31 </options>
32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]']</validator>
33 </param>
34 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
35 <repeat name="sample_metadata" help="[optional] The sample metadata." title="sample_metadata: Metadata">
36 <conditional name="__q2galaxy__GUI__conditional__sample_metadata__">
37 <param name="type" type="select" label="sample_metadata: Metadata">
38 <option value="tsv" selected="true">Metadata from TSV</option>
39 <option value="qza">Metadata from Artifact</option>
40 </param>
41 <when value="tsv">
42 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
43 </when>
44 <when value="qza">
45 <param name="source" type="data" format="qza" label="Metadata Source"/>
46 </when>
47 </conditional>
48 </repeat>
49 </section>
50 </inputs>
51 <outputs>
52 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
53 </outputs>
54 <tests/>
55 <help>
56 QIIME 2: feature-table -summarize
57 =================================
58 Summarize table helper
59
60
61 Outputs:
62 --------
63 :visualization.qzv: &lt;no description&gt;
64
65 |
66
67 Description:
68 ------------
69 Generate visual and tabular summaries of a feature table.
70
71
72 |
73
74 </help>
75 <citations>
76 <citation type="doi">10.1038/s41587-019-0209-9</citation>
77 </citations>
78 </tool>