diff qiime2__feature_table___summarize.xml @ 0:1cfa6faf8b61 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
author q2d2
date Wed, 28 Jan 2026 16:28:44 +0000
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+++ b/qiime2__feature_table___summarize.xml	Wed Jan 28 16:28:44 2026 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2026, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2026.1.0)
+for:
+    qiime2 (version: 2026.1.0)
+-->
+<tool name="qiime2 feature-table -summarize" id="qiime2__feature_table___summarize" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
+    <description>Summarize table helper</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
+    </requirements>
+    <version_command>q2galaxy version feature_table</version_command>
+    <command detect_errors="exit_code">q2galaxy run feature_table _summarize '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | PresenceAbsence]" help="[required]  The feature table to be summarized.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureTable[Frequency]"/>
+                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]']</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <repeat name="sample_metadata" help="[optional]  The sample metadata." title="sample_metadata: Metadata">
+                <conditional name="__q2galaxy__GUI__conditional__sample_metadata__">
+                    <param name="type" type="select" label="sample_metadata: Metadata">
+                        <option value="tsv" selected="true">Metadata from TSV</option>
+                        <option value="qza">Metadata from Artifact</option>
+                    </param>
+                    <when value="tsv">
+                        <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
+                    </when>
+                    <when value="qza">
+                        <param name="source" type="data" format="qza" label="Metadata Source"/>
+                    </when>
+                </conditional>
+            </repeat>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: feature-table -summarize
+=================================
+Summarize table helper
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Generate visual and tabular summaries of a feature table.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>