Mercurial > repos > q2d2 > qiime2__feature_table__filter_features_conditionally
annotate qiime2__feature_table__filter_features_conditionally.xml @ 1:dbeb5a365844 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author | q2d2 |
---|---|
date | Fri, 13 Jan 2023 22:52:51 +0000 |
parents | 90e36d8f2299 |
children | 78538c1b0993 |
rev | line source |
---|---|
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1 <?xml version='1.0' encoding='utf-8'?> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
2 <!-- |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
3 Copyright (c) 2023, QIIME 2 development team. |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
4 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
6 --> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
7 <!-- |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
8 This tool was automatically generated by: |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
9 q2galaxy (version: 2022.11.1) |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
10 for: |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
11 qiime2 (version: 2022.11.1) |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
12 --> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
13 <tool name="qiime2 feature-table filter-features-conditionally" id="qiime2__feature_table__filter_features_conditionally" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
14 <description>Filter features from a table based on abundance and prevalence</description> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
15 <requirements> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
16 <container type="docker">quay.io/qiime2/core:2022.11</container> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
17 </requirements> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
18 <version_command>q2galaxy version feature_table</version_command> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
19 <command detect_errors="exit_code">q2galaxy run feature_table filter_features_conditionally '$inputs'</command> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
20 <configfiles> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
21 <inputs name="inputs" data_style="paths"/> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
22 </configfiles> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
23 <inputs> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]" help="[required] The feature table from which features should be filtered."> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
25 <options options_filter_attribute="metadata.semantic_type"> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
27 <filter type="add_value" value="FeatureTable[Composition]"/> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
28 <filter type="add_value" value="FeatureTable[Frequency]"/> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
29 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
30 </options> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
32 </param> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
33 <param name="abundance" type="float" min="0" max="0.999999" value="" label="abundance: Float % Range(0, 1)" help="[required] The minimum relative abundance for a feature to be retained."/> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
34 <param name="prevalence" type="float" min="0" max="0.999999" value="" label="prevalence: Float % Range(0, 1)" help="[required] The minimum portion of samples that a feature must have a relative abundance of at least `abundance` to be retained."/> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
35 </inputs> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
36 <outputs> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
37 <data name="filtered_table" format="qza" label="${tool.name} on ${on_string}: filtered_table.qza" from_work_dir="filtered_table.qza"/> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
38 </outputs> |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
39 <tests> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
40 <test> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
41 <param name="table" value="filter_features_conditionally.test0.feature-table.qza" ftype="qza"/> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
42 <param name="abundance" value="0.01"/> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
43 <param name="prevalence" value="0.34"/> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
44 <output name="filtered_table" ftype="qza"> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
45 <assert_contents> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
46 <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml"> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
47 <has_line_matching expression="type: FeatureTable\[Frequency\]"/> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
48 </has_archive_member> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
49 </assert_contents> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
50 </output> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
51 </test> |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
52 </tests> |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
53 <help> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
54 QIIME 2: feature-table filter-features-conditionally |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
55 ==================================================== |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
56 Filter features from a table based on abundance and prevalence |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
57 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
58 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
59 Outputs: |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
60 -------- |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
61 :filtered_table.qza: The resulting feature table filtered by feature. |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
62 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
63 | |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
64 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
65 Description: |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
66 ------------ |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
67 Filter features based on the relative abundance in a certain portion of samples (i.e., features must have a relative abundance of at least `abundance` in at least `prevalence` number of samples). Any samples with a frequency of zero after feature filtering will also be removed. |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
68 |
1
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
69 Examples: |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
70 --------- |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
71 |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
72 feature_table_filter_features_conditionally |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
73 ******************************************* |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
74 | Retain only features with at least 1%% abundance in at least 34%% of samples. |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
75 Using the ``qiime2 feature-table filter-features-conditionally`` tool: |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
76 #. Set *"table"* to ``#: feature-table.qza`` |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
77 #. Set *"abundance"* to ``0.01`` |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
78 #. Set *"prevalence"* to ``0.34`` |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
79 #. Press the ``Execute`` button. |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
80 |
dbeb5a365844
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
81 |
0
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
82 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
83 | |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
84 |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
85 </help> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
86 <citations> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
87 <citation type="doi">10.1038/s41587-019-0209-9</citation> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
88 </citations> |
90e36d8f2299
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
89 </tool> |