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author q2d2
date Mon, 29 Aug 2022 20:01:40 +0000
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094d1edf634b planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2022, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2022.8.1)
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10 for:
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11 qiime2 (version: 2022.8.1)
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12 -->
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13 <tool name="qiime2 feature-table subsample" id="qiime2__feature_table__subsample" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Subsample table</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2022.8</container>
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17 </requirements>
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18 <version_command>q2galaxy version feature_table</version_command>
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19 <command detect_errors="aggressive">q2galaxy run feature_table subsample '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="paths"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The feature table to be sampled.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="FeatureTable[Frequency]"/>
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27 </options>
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28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
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29 </param>
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30 <param name="subsampling_depth" type="integer" min="1" value="" label="subsampling_depth: Int % Range(1, None)" help="[required] The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table."/>
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31 <param name="axis" type="select" label="axis: Str % Choices('sample', 'feature')" display="radio">
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32 <option value="__q2galaxy__::literal::None">Selection required</option>
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33 <option value="sample">sample</option>
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34 <option value="feature">feature</option>
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35 <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
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36 </param>
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37 </inputs>
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38 <outputs>
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39 <data name="sampled_table" format="qza" label="${tool.name} on ${on_string}: sampled_table.qza" from_work_dir="sampled_table.qza"/>
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40 </outputs>
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41 <tests/>
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42 <help>
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43 QIIME 2: feature-table subsample
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44 ================================
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45 Subsample table
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46
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47
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48 Outputs:
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49 --------
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50 :sampled_table.qza: The resulting subsampled feature table.
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51
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52 |
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53
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54 Description:
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55 ------------
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56 Randomly pick samples or features, without replacement, from the table.
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57
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58
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59 |
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60
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61 </help>
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62 <citations>
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63 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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64 </citations>
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65 </tool>