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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 20:00:26 +0000
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bfe9f18ac641 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2022, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2022.8.1)
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10 for:
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11 qiime2 (version: 2022.8.1)
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12 -->
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13 <tool name="qiime2 feature-table summarize" id="qiime2__feature_table__summarize" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Summarize table</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2022.8</container>
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17 </requirements>
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18 <version_command>q2galaxy version feature_table</version_command>
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19 <command detect_errors="aggressive">q2galaxy run feature_table summarize '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="paths"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table to be summarized.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
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27 <filter type="add_value" value="FeatureTable[Frequency]"/>
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28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
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29 </options>
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30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
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31 </param>
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32 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
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33 <repeat name="sample_metadata" help="[optional] The sample metadata." title="sample_metadata: Metadata">
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34 <conditional name="__q2galaxy__GUI__conditional__sample_metadata__">
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35 <param name="type" type="select" label="sample_metadata: Metadata">
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36 <option value="tsv" selected="true">Metadata from TSV</option>
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37 <option value="qza">Metadata from Artifact</option>
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38 </param>
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39 <when value="tsv">
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40 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
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41 </when>
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42 <when value="qza">
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43 <param name="source" type="data" format="qza" label="Metadata Source"/>
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44 </when>
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45 </conditional>
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46 </repeat>
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47 </section>
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48 </inputs>
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49 <outputs>
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50 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
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51 </outputs>
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52 <tests/>
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53 <help>
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54 QIIME 2: feature-table summarize
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55 ================================
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56 Summarize table
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57
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58
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59 Outputs:
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60 --------
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61 :visualization.qzv: &lt;no description&gt;
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62
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63 |
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64
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65 Description:
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66 ------------
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67 Generate visual and tabular summaries of a feature table.
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68
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69
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70 |
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71
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72 </help>
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73 <citations>
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74 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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75 </citations>
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76 </tool>