Mercurial > repos > q2d2 > qiime2__phylogeny__filter_table

changeset 5:fa11896bafbb draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:53:48 +0000
parents 167ee24ffe2f
children
files qiime2__phylogeny__filter_table.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
diffstat 2 files changed, 9 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__phylogeny__filter_table.xml	Mon Jun 03 23:29:55 2024 +0000
+++ b/qiime2__phylogeny__filter_table.xml	Wed Oct 30 19:53:48 2024 +0000
@@ -6,14 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.5.0)
+    q2galaxy (version: 2024.10.0)
 for:
-    qiime2 (version: 2024.5.0)
+    qiime2 (version: 2024.10.1)
 -->
-<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Remove features from table if they're not present in tree.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny filter_table '$inputs'</command>
@@ -23,16 +26,16 @@
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required]  Feature table that features should be filtered from.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
-                <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                 <filter type="add_value" value="FeatureTable[Frequency]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
         <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted | Unrooted]" help="[required]  Tree where tip identifiers are the feature identifiers that should be retained in the table.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Unrooted]"/>
                 <filter type="add_value" value="Phylogeny[Rooted]"/>
-                <filter type="add_value" value="Phylogeny[Unrooted]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator>
         </param>
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed