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author q2d2
date Thu, 25 Apr 2024 21:17:26 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2024.2.1)
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10 for:
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c52143a5d73d planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
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11 qiime2 (version: 2024.2.0)
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12 -->
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13 <tool name="qiime2 phylogeny midpoint-root" id="qiime2__phylogeny__midpoint_root" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
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14 <description>Midpoint root an unrooted phylogenetic tree.</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
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17 </requirements>
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18 <version_command>q2galaxy version phylogeny</version_command>
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19 <command detect_errors="exit_code">q2galaxy run phylogeny midpoint_root '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Unrooted]" help="[required] The phylogenetic tree to be rooted.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="Phylogeny[Unrooted]"/>
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27 </options>
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28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Unrooted]']</validator>
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29 </param>
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30 </inputs>
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31 <outputs>
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32 <data name="rooted_tree" format="qza" label="${tool.name} on ${on_string}: rooted_tree.qza" from_work_dir="rooted_tree.qza"/>
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33 </outputs>
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34 <tests/>
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35 <help>
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36 QIIME 2: phylogeny midpoint-root
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37 ================================
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38 Midpoint root an unrooted phylogenetic tree.
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41 Outputs:
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42 --------
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43 :rooted_tree.qza: The rooted phylogenetic tree.
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45 |
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47 Description:
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48 ------------
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49 Midpoint root an unrooted phylogenetic tree.
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52 |
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54 </help>
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55 <citations>
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56 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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57 </citations>
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58 </tool>