Mercurial > repos > q2d2 > qiime2__quality_control__bowtie2_build

changeset 3:c2a5d40cd4ae draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:18:41 +0000
parents ea81dc3914f8
children
files qiime2__quality_control__bowtie2_build.xml
diffstat 1 files changed, 6 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__quality_control__bowtie2_build.xml	Thu Jun 08 19:51:10 2023 +0000
+++ b/qiime2__quality_control__bowtie2_build.xml	Thu Apr 25 21:18:41 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 quality-control bowtie2-build" id="qiime2__quality_control__bowtie2_build" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 quality-control bowtie2-build" id="qiime2__quality_control__bowtie2_build" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Build bowtie2 index from reference sequences.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version quality_control</version_command>
     <command detect_errors="exit_code">q2galaxy run quality_control bowtie2_build '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required]  Reference sequences used to build bowtie2 index.">
@@ -27,9 +27,6 @@
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator>
         </param>
-        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
-            <param name="n_threads" type="integer" min="1" value="1" label="n_threads: Int % Range(1, None)" help="[default: 1]  Number of threads to launch"/>
-        </section>
     </inputs>
     <outputs>
         <data name="database" format="qza" label="${tool.name} on ${on_string}: database.qza" from_work_dir="database.qza"/>