Mercurial > repos > q2d2 > qiime2__quality_control__decontam_identify_batches

changeset 4:076ef150aceb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
author q2d2
date Tue, 15 Jul 2025 22:03:26 +0000
parents 4223f6deb8ef
children
files qiime2__quality_control__decontam_identify_batches.xml
diffstat 1 files changed, 5 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__quality_control__decontam_identify_batches.xml	Mon May 05 19:01:17 2025 +0000
+++ b/qiime2__quality_control__decontam_identify_batches.xml	Tue Jul 15 22:03:26 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.4.0)
+    q2galaxy (version: 2025.7.0)
 for:
-    qiime2 (version: 2025.4.0)
+    qiime2 (version: 2025.7.0)
 -->
-<tool name="qiime2 quality-control decontam-identify-batches" id="qiime2__quality_control__decontam_identify_batches" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 quality-control decontam-identify-batches" id="qiime2__quality_control__decontam_identify_batches" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
     <description>Identify contaminants in Batch Mode</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
     </requirements>
     <version_command>q2galaxy version quality_control</version_command>
     <command detect_errors="exit_code">q2galaxy run quality_control decontam_identify_batches '$inputs'</command>
@@ -64,11 +64,7 @@
                 </options>
                 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator>
             </param>
-            <param name="filter_empty_features" type="select" label="filter_empty_features: Bool" help="[optional]  If true, features which are not present in a split feature table are dropped." display="radio">
-                <option value="__q2galaxy__::literal::None" selected="true">None (Use default behavior)</option>
-                <option value="__q2galaxy__::literal::True">Yes</option>
-                <option value="__q2galaxy__::literal::False">No</option>
-            </param>
+            <param name="filter_empty_features" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="filter_empty_features: Bool" help="[default: Yes]  If true, features which are not present in a split feature table are dropped."/>
             <conditional name="__q2galaxy__GUI__conditional__freq_concentration_column__" label="freq_concentration_column: Str">
                 <param name="__q2galaxy__GUI__select__" type="select" label="freq_concentration_column: Str" help="[optional]  Input column name that has concentration information for the samples, used in Frequency or Combined methods">
                     <option value="__q2galaxy__::control::default" selected="true">None (Use default behavior)</option>