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date Thu, 25 Apr 2024 21:20:40 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2024, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2024.2.1)
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10 for:
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11 qiime2 (version: 2024.2.0)
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12 -->
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13 <tool name="qiime2 rescript subsample-fasta" id="qiime2__rescript__subsample_fasta" version="2024.2.2+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
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14 <description>Subsample an indicated number of sequences from a FASTA file.</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
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17 </requirements>
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18 <version_command>q2galaxy version rescript</version_command>
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19 <command detect_errors="exit_code">q2galaxy run rescript subsample_fasta '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[AlignedSequence¹ | Sequence²]" help="[required] Sequences to subsample from.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="FeatureData[AlignedSequence]"/>
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27 <filter type="add_value" value="FeatureData[Sequence]"/>
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28 </options>
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29 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
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30 </param>
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31 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
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32 <param name="subsample_size" type="float" min="1e-06" max="1" value="0.1" label="subsample_size: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.1] Size of the random sample as a fraction of the total count"/>
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33 <param name="random_seed" type="integer" min="1" value="1" label="random_seed: Int % Range(1, None)" help="[default: 1] Seed to be used for random sampling."/>
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34 </section>
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35 </inputs>
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36 <outputs>
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37 <data name="sample_sequences" format="qza" label="${tool.name} on ${on_string}: sample_sequences.qza" from_work_dir="sample_sequences.qza"/>
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38 </outputs>
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39 <tests/>
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40 <help>
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41 QIIME 2: rescript subsample-fasta
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42 =================================
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43 Subsample an indicated number of sequences from a FASTA file.
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44
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45
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46 Outputs:
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47 --------
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48 :sample_sequences.qza: Sample of original sequences.
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49
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50 |
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51
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52 Description:
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53 ------------
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54 Subsample a set of sequences (either plain or aligned DNA)based on a fraction of original sequences.
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55
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56
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57 |
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58
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59 </help>
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60 <citations>
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61 <citation type="doi">10.1371/journal.pcbi.1009581</citation>
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62 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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63 </citations>
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64 </tool>