Mercurial > repos > q2d2 > qiime2__vizard__lineplot

changeset 1:0b666cc4e746 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vizard commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 19:05:23 +0000
parents df9f1ff48c29
children
files qiime2__vizard__lineplot.xml
diffstat 1 files changed, 28 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__vizard__lineplot.xml	Wed Oct 30 19:59:34 2024 +0000
+++ b/qiime2__vizard__lineplot.xml	Mon May 05 19:05:23 2025 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.10.0)
+    q2galaxy (version: 2025.4.0)
 for:
-    qiime2 (version: 2024.10.1)
+    qiime2 (version: 2025.4.0)
 -->
-<tool name="qiime2 vizard lineplot" id="qiime2__vizard__lineplot" version="0.0.1.dev0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 vizard lineplot" id="qiime2__vizard__lineplot" version="0.0.1.dev0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
     <description>Lineplot</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
     </requirements>
     <version_command>q2galaxy version vizard</version_command>
     <command detect_errors="exit_code">q2galaxy run vizard lineplot '$inputs'</command>
@@ -44,13 +44,23 @@
             </sanitizer>
             <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
         </param>
-        <param name="y_measure" type="text" label="y_measure: Str" help="[required]  Numeric measure from the input Metadata that should be plotted on the y-axis.">
-            <sanitizer>
-                <valid initial="string.printable"/>
-            </sanitizer>
-            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
-        </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <conditional name="__q2galaxy__GUI__conditional__y_measure__" label="y_measure: Str">
+                <param name="__q2galaxy__GUI__select__" type="select" label="y_measure: Str" help="[optional]  Numeric measure from the input Metadata that should be plotted on the y-axis.">
+                    <option value="__q2galaxy__::control::default" selected="true">None (Use default behavior)</option>
+                    <option value="__q2galaxy__::control::provide">Provide a value</option>
+                </param>
+                <when value="__q2galaxy__::control::default">
+                    <param name="y_measure" type="hidden" value="__q2galaxy__::literal::None"/>
+                </when>
+                <when value="__q2galaxy__::control::provide">
+                    <param name="y_measure" type="text">
+                        <sanitizer>
+                            <valid initial="string.printable"/>
+                        </sanitizer>
+                    </param>
+                </when>
+            </conditional>
             <param name="replicate_method" type="select" label="replicate_method: Str % Choices('none', 'median', 'mean')" display="radio">
                 <option value="none" selected="true">none</option>
                 <option value="median">median</option>
@@ -205,9 +215,9 @@
 
 
  #. Set *"x_measure"* to ``x``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
+    #. Set *"y_measure"* to ``y``
     #. Set *"replicate_method"* to ``median``
     #. Set *"group_by"* to ``group``
     #. Set *"title"* to ``Lineplot with median replicate method, grouped by `group`.``
@@ -238,9 +248,9 @@
 
 
  #. Set *"x_measure"* to ``x``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
+    #. Set *"y_measure"* to ``y``
     #. Set *"replicate_method"* to ``mean``
     #. Set *"group_by"* to ``group``
     #. Set *"title"* to ``Lineplot with mean replicate method, grouped by `group`.``
@@ -271,9 +281,9 @@
 
 
  #. Set *"x_measure"* to ``x``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
+    #. Set *"y_measure"* to ``y``
     #. Set *"replicate_method"* to ``median``
     #. Set *"title"* to ``Lineplot with median replicate method (no grouping).``
 
@@ -303,9 +313,9 @@
 
 
  #. Set *"x_measure"* to ``x``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
+    #. Set *"y_measure"* to ``y``
     #. Set *"replicate_method"* to ``mean``
     #. Set *"title"* to ``Lineplot with mean replicate method (no grouping).``
 
@@ -335,9 +345,9 @@
 
 
  #. Set *"x_measure"* to ``a``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
+    #. Set *"y_measure"* to ``y``
     #. Set *"group_by"* to ``group``
     #. Set *"title"* to ``Lineplot with no replicate method, grouped by `group`.``
 
@@ -367,10 +377,10 @@
 
 
  #. Set *"x_measure"* to ``b``
- #. Set *"y_measure"* to ``y``
  #. Expand the ``additional options`` section
 
-    - Set *"title"* to ``Lineplot with no replicate method (no grouping).``
+    #. Set *"y_measure"* to ``y``
+    #. Set *"title"* to ``Lineplot with no replicate method (no grouping).``
 
  #. Press the ``Execute`` button.