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annotate qiime2_core__tools__export.xml @ 0:0214b9ae8a6e draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 20:37:34 +0000
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children d3b1853c4efd
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0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2022, QIIME 2 development team.
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4
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2022.8.1)
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10 for:
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11 qiime2 (version: 2022.8.1)
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12 -->
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13 <tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2022.8.1+dist.h91e3be72.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Export data from a QIIME 2 artifact</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2022.8</container>
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17 </requirements>
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18 <command>q2galaxy run tools export '$inputs'</command>
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19 <configfiles>
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20 <inputs name="inputs" data_style="paths"/>
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21 </configfiles>
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22 <inputs>
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23 <param name="input" type="data" format="qza" label="input: The path to the artifact you want to export"/>
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24 <param name="type_peek" type="select" label="The type of your input qza is:" display="radio">
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25 <options>
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26 <filter type="data_meta" key="semantic_type" ref="input"/>
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27 </options>
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28 </param>
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29 <param name="fmt_peek" type="select" label="The current QIIME 2 format is:" display="radio">
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30 <options>
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31 <filter type="data_meta" key="format" ref="input"/>
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32 </options>
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33 </param>
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34 <conditional name="fmt_finder">
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35 <param name="type" type="select" label="To change the format, select the type indicated above:">
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36 <option value="None" selected="true">export as is (no conversion)</option>
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37 <option value="Bowtie2Index">Bowtie2Index</option>
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38 <option value="DeblurStats">DeblurStats</option>
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39 <option value="DistanceMatrix">DistanceMatrix</option>
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40 <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>
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41 <option value="EMPSingleEndSequences">EMPSingleEndSequences</option>
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42 <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option>
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43 <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>
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44 <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>
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45 <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>
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46 <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>
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47 <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>
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48 <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>
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49 <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>
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50 <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>
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51 <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>
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52 <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option>
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53 <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option>
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54 <option value="FeatureData__ob__Taxonomy__cb__">FeatureData[Taxonomy]</option>
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55 <option value="FeatureTable__ob__Balance__cb__">FeatureTable[Balance]</option>
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56 <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option>
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57 <option value="FeatureTable__ob__Design__cb__">FeatureTable[Design]</option>
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58 <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option>
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59 <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option>
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60 <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>
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61 <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>
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62 <option value="Hierarchy">Hierarchy</option>
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63 <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>
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64 <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>
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65 <option value="PCoAResults">PCoAResults</option>
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66 <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option>
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67 <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option>
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68 <option value="Placements">Placements</option>
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69 <option value="ProcrustesStatistics">ProcrustesStatistics</option>
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70 <option value="QualityFilterStats">QualityFilterStats</option>
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71 <option value="RawSequences">RawSequences</option>
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72 <option value="SampleData__ob__AlphaDiversity__cb__">SampleData[AlphaDiversity]</option>
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73 <option value="SampleData__ob__ArtificialGrouping__cb__">SampleData[ArtificialGrouping]</option>
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74 <option value="SampleData__ob__BooleanSeries__cb__">SampleData[BooleanSeries]</option>
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75 <option value="SampleData__ob__ClassifierPredictions__cb__">SampleData[ClassifierPredictions]</option>
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76 <option value="SampleData__ob__DADA2Stats__cb__">SampleData[DADA2Stats]</option>
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77 <option value="SampleData__ob__FirstDifferences__cb__">SampleData[FirstDifferences]</option>
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78 <option value="SampleData__ob__JoinedSequencesWithQuality__cb__">SampleData[JoinedSequencesWithQuality]</option>
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79 <option value="SampleData__ob__PairedEndSequencesWithQuality__cb__">SampleData[PairedEndSequencesWithQuality]</option>
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80 <option value="SampleData__ob__Probabilities__cb__">SampleData[Probabilities]</option>
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81 <option value="SampleData__ob__RegressorPredictions__cb__">SampleData[RegressorPredictions]</option>
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82 <option value="SampleData__ob__SequencesWithQuality__cb__">SampleData[SequencesWithQuality]</option>
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83 <option value="SampleData__ob__Sequences__cb__">SampleData[Sequences]</option>
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84 <option value="SampleData__ob__TrueTargets__cb__">SampleData[TrueTargets]</option>
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85 <option value="SampleEstimator__ob__Classifier__cb__">SampleEstimator[Classifier]</option>
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86 <option value="SampleEstimator__ob__Regressor__cb__">SampleEstimator[Regressor]</option>
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87 <option value="SeppReferenceDatabase">SeppReferenceDatabase</option>
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88 <option value="TaxonomicClassifier">TaxonomicClassifier</option>
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89 <option value="UchimeStats">UchimeStats</option>
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90 </param>
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91 <when value="None">
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92 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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93 <option value="None" selected="true">export as is (no conversion)</option>
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94 </param>
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95 </when>
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96 <when value="Bowtie2Index">
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97 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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98 <option value="None" selected="true">export as is (no conversion)</option>
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99 <option value="Bowtie2IndexDirFmt">Bowtie2 Index Directory Format</option>
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100 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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101 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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102 <when value="DeblurStats">
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103 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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104 <option value="None" selected="true">export as is (no conversion)</option>
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105 <option value="DeblurStatsFmt">Deblur Stats Format</option>
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106 </param>
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107 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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108 <when value="DistanceMatrix">
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109 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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110 <option value="None" selected="true">export as is (no conversion)</option>
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111 <option value="LSMatFormat">LS Mat Format</option>
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112 </param>
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113 </when>
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114 <when value="EMPPairedEndSequences">
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115 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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116 <option value="None" selected="true">export as is (no conversion)</option>
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117 <option value="EMPPairedEndDirFmt">EMP Paired End Directory Format</option>
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118 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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119 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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120 <when value="EMPSingleEndSequences">
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121 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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122 <option value="None" selected="true">export as is (no conversion)</option>
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123 <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
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124 </param>
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125 </when>
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126 <when value="ErrorCorrectionDetails">
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127 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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128 <option value="None" selected="true">export as is (no conversion)</option>
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129 </param>
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130 </when>
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131 <when value="FeatureData__ob__AlignedProteinSequence__cb__">
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132 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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133 <option value="None" selected="true">export as is (no conversion)</option>
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134 <option value="AlignedProteinFASTAFormat">Aligned Protein FASTA Format</option>
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135 </param>
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136 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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137 <when value="FeatureData__ob__AlignedRNASequence__cb__">
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138 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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139 <option value="None" selected="true">export as is (no conversion)</option>
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140 <option value="AlignedRNAFASTAFormat">Aligned RNAFASTA Format</option>
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141 </param>
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142 </when>
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143 <when value="FeatureData__ob__AlignedSequence__cb__">
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144 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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145 <option value="None" selected="true">export as is (no conversion)</option>
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146 <option value="AlignedDNAFASTAFormat">Aligned DNAFASTA Format</option>
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147 </param>
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148 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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149 <when value="FeatureData__ob__BLAST6__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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150 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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151 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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152 <option value="BLAST6Format">BLAST6 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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153 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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154 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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155 <when value="FeatureData__ob__Differential__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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156 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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157 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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158 <option value="DifferentialFormat">Differential Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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159 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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160 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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161 <when value="FeatureData__ob__Importance__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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162 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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163 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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164 <option value="ImportanceFormat">Importance Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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165 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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166 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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167 <when value="FeatureData__ob__PairedEndRNASequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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168 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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169 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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170 <option value="PairedRNASequencesDirectoryFormat">Paired RNA Sequences Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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171 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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172 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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173 <when value="FeatureData__ob__PairedEndSequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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174 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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175 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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176 <option value="PairedDNASequencesDirectoryFormat">Paired DNA Sequences Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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177 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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178 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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179 <when value="FeatureData__ob__ProteinSequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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180 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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181 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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182 <option value="ProteinFASTAFormat">Protein FASTA Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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183 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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184 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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185 <when value="FeatureData__ob__RNASequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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186 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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187 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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188 <option value="RNAFASTAFormat">RNAFASTA Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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189 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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190 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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191 <when value="FeatureData__ob__Sequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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192 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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193 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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194 <option value="DNAFASTAFormat">DNAFASTA Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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195 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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196 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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197 <when value="FeatureData__ob__Taxonomy__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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198 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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199 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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200 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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201 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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202 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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203 <when value="FeatureTable__ob__Balance__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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204 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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205 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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206 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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207 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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208 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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209 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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210 <when value="FeatureTable__ob__Composition__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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211 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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212 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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213 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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214 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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215 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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216 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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217 <when value="FeatureTable__ob__Design__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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218 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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219 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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220 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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221 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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222 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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223 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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224 <when value="FeatureTable__ob__Frequency__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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225 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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226 <option value="None" selected="true">export as is (no conversion)</option>
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227 <option value="BIOMV210Format">BIOMV210 Format</option>
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228 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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229 </param>
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230 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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231 <when value="FeatureTable__ob__PercentileNormalized__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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232 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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233 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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234 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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235 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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236 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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237 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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238 <when value="FeatureTable__ob__PresenceAbsence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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239 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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240 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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241 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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242 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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243 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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244 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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245 <when value="FeatureTable__ob__RelativeFrequency__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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246 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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247 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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248 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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249 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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250 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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251 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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252 <when value="Hierarchy">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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253 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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254 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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255 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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256 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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257 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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258 <when value="MultiplexedPairedEndBarcodeInSequence">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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259 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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260 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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261 <option value="MultiplexedPairedEndBarcodeInSequenceDirFmt">Multiplexed Paired End Barcode In Sequence Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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262 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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263 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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264 <when value="MultiplexedSingleEndBarcodeInSequence">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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265 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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266 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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267 <option value="FastqGzFormat">Fastq Gz Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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268 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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269 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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270 <when value="PCoAResults">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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271 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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272 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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273 <option value="OrdinationFormat">Ordination Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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274 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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275 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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276 <when value="Phylogeny__ob__Rooted__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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277 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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278 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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279 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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280 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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281 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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282 <when value="Phylogeny__ob__Unrooted__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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283 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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284 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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285 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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286 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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287 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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288 <when value="Placements">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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289 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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290 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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291 <option value="PlacementsFormat">Placements Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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292 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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293 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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294 <when value="ProcrustesStatistics">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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295 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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296 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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297 <option value="ProcrustesStatisticsFmt">Procrustes Statistics Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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298 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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299 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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300 <when value="QualityFilterStats">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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301 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
302 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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303 <option value="QualityFilterStatsFmt">Quality Filter Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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304 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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305 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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306 <when value="RawSequences">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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307 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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308 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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309 <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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310 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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311 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
312 <when value="SampleData__ob__AlphaDiversity__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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313 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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314 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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315 <option value="AlphaDiversityFormat">Alpha Diversity Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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316 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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317 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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318 <when value="SampleData__ob__ArtificialGrouping__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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319 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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320 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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321 <option value="ArtificialGroupingFormat">Artificial Grouping Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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322 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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323 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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324 <when value="SampleData__ob__BooleanSeries__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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325 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
326 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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327 <option value="BooleanSeriesFormat">Boolean Series Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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328 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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329 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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330 <when value="SampleData__ob__ClassifierPredictions__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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331 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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332 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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333 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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334 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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335 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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336 <when value="SampleData__ob__DADA2Stats__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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337 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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338 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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339 <option value="DADA2StatsFormat">DADA2 Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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340 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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341 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
342 <when value="SampleData__ob__FirstDifferences__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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343 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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344 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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345 <option value="FirstDifferencesFormat">First Differences Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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346 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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347 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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348 <when value="SampleData__ob__JoinedSequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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349 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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350 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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351 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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352 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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353 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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354 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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355 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
356 <when value="SampleData__ob__PairedEndSequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
357 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
358 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
359 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
360 <option value="SingleLanePerSamplePairedEndFastqDirFmt">Single Lane Per Sample Paired End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
361 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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362 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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363 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
364 <when value="SampleData__ob__Probabilities__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
365 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
366 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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367 <option value="ProbabilitiesFormat">Probabilities Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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368 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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369 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
370 <when value="SampleData__ob__RegressorPredictions__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
371 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
372 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
373 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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374 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
375 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
376 <when value="SampleData__ob__SequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
377 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
378 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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379 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
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380 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
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381 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
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382 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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383 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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384 <when value="SampleData__ob__Sequences__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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385 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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386 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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387 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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388 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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389 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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390 <when value="SampleData__ob__TrueTargets__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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391 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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392 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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393 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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394 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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395 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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396 <when value="SampleEstimator__ob__Classifier__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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397 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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398 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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399 <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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400 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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401 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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402 <when value="SampleEstimator__ob__Regressor__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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403 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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404 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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405 <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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406 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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407 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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408 <when value="SeppReferenceDatabase">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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409 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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410 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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411 <option value="SeppReferenceDirFmt">Sepp Reference Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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412 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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413 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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414 <when value="TaxonomicClassifier">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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415 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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416 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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417 <option value="TaxonomicClassiferTemporaryPickleDirFmt">Taxonomic Classifer Temporary Pickle Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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418 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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419 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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420 <when value="UchimeStats">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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421 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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422 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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423 <option value="UchimeStatsFmt">Uchime Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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424 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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425 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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426 </conditional>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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427 </inputs>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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428 <outputs>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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429 <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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430 <filter>fmt_finder['output_format'] == 'None' and fmt_peek not in {'NewickFormat', 'DADA2StatsFormat', 'AlignedProteinFASTAFormat', 'QualityFilterStatsDirFmt', 'ProbabilitiesFormat', 'OrdinationFormat', 'SingleLanePerSamplePairedEndFastqDirFmt', 'EMPPairedEndDirFmt', 'MultiplexedSingleEndBarcodeInSequenceDirFmt', 'AlignedDNASequencesDirectoryFormat', 'TSVTaxonomyDirectoryFormat', 'AlignedRNAFASTAFormat', 'MultiplexedPairedEndBarcodeInSequenceDirFmt', 'BooleanSeriesFormat', 'QualityFilterStatsFmt', 'BIOMV210DirFmt', 'EMPSingleEndDirFmt', 'Bowtie2IndexDirFmt', 'PlacementsFormat', 'TrueTargetsDirectoryFormat', 'AlignedRNASequencesDirectoryFormat', 'ProbabilitiesDirectoryFormat', 'ArtificialGroupingDirectoryFormat', 'DifferentialDirectoryFormat', 'AlignedDNAFASTAFormat', 'LSMatFormat', 'FastqGzFormat', 'RNASequencesDirectoryFormat', 'ProteinSequencesDirectoryFormat', 'DADA2StatsDirFmt', 'SeppReferenceDirFmt', 'DNAFASTAFormat', 'QIIME1DemuxDirFmt', 'BooleanSeriesDirectoryFormat', 'PairedRNASequencesDirectoryFormat', 'AlphaDiversityFormat', 'PlacementsDirFmt', 'ProcrustesStatisticsDirFmt', 'ImportanceFormat', 'NewickDirectoryFormat', 'TSVTaxonomyFormat', 'DifferentialFormat', 'QIIME1DemuxFormat', 'CasavaOneEightSingleLanePerSampleDirFmt', 'BLAST6Format', 'UchimeStatsFmt', 'FirstDifferencesFormat', 'PredictionsDirectoryFormat', 'ProcrustesStatisticsFmt', 'SingleLanePerSampleSingleEndFastqDirFmt', 'AlignedProteinSequencesDirectoryFormat', 'SampleEstimatorDirFmt', 'RNAFASTAFormat', 'ProteinFASTAFormat', 'ArtificialGroupingFormat', 'AlphaDiversityDirectoryFormat', 'UchimeStatsDirFmt', 'TaxonomicClassiferTemporaryPickleDirFmt', 'PairedDNASequencesDirectoryFormat', 'DNASequencesDirectoryFormat', 'DistanceMatrixDirectoryFormat', 'DeblurStatsFmt', 'DeblurStatsDirFmt', 'ErrorCorrectionDetailsDirFmt', 'OrdinationDirectoryFormat', 'BLAST6DirectoryFormat', 'BIOMV210Format', 'PredictionsFormat', 'ImportanceDirectoryFormat', 'FirstDifferencesDirectoryFormat'}</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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431 <discover_datasets pattern="__designation_and_ext__" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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432 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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433 <data name="AlignedDNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedDNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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434 <filter>fmt_finder['output_format'] == 'AlignedDNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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435 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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436 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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437 <data name="AlignedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedDNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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438 <filter>fmt_finder['output_format'] == 'AlignedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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439 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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440 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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441 <data name="AlignedProteinFASTAFormat" label="${tool.name} on ${on_string} as AlignedProteinFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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442 <filter>fmt_finder['output_format'] == 'AlignedProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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443 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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444 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
445 <data name="AlignedProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedProteinSequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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446 <filter>fmt_finder['output_format'] == 'AlignedProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinSequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
447 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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448 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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449 <data name="AlignedRNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedRNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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450 <filter>fmt_finder['output_format'] == 'AlignedRNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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451 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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452 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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453 <data name="AlignedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedRNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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454 <filter>fmt_finder['output_format'] == 'AlignedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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455 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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456 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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457 <data name="AlphaDiversityDirectoryFormat" label="${tool.name} on ${on_string} as AlphaDiversityDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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458 <filter>fmt_finder['output_format'] == 'AlphaDiversityDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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459 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;alpha-diversity)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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460 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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461 <data name="AlphaDiversityFormat" label="${tool.name} on ${on_string} as AlphaDiversityFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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462 <filter>fmt_finder['output_format'] == 'AlphaDiversityFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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463 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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464 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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465 <data name="ArtificialGroupingDirectoryFormat" label="${tool.name} on ${on_string} as ArtificialGroupingDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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466 <filter>fmt_finder['output_format'] == 'ArtificialGroupingDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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467 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;artificial-groupings)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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468 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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469 <data name="ArtificialGroupingFormat" label="${tool.name} on ${on_string} as ArtificialGroupingFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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470 <filter>fmt_finder['output_format'] == 'ArtificialGroupingFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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471 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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472 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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473 <data name="BIOMV210DirFmt" label="${tool.name} on ${on_string} as BIOMV210DirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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474 <filter>fmt_finder['output_format'] == 'BIOMV210DirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210DirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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475 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;feature-table)\.(?P&lt;ext&gt;biom)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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476 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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477 <data name="BIOMV210Format" label="${tool.name} on ${on_string} as BIOMV210Format">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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478 <filter>fmt_finder['output_format'] == 'BIOMV210Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210Format')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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479 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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480 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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481 <data name="BLAST6DirectoryFormat" label="${tool.name} on ${on_string} as BLAST6DirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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482 <filter>fmt_finder['output_format'] == 'BLAST6DirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6DirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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483 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;blast6)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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484 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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485 <data name="BLAST6Format" label="${tool.name} on ${on_string} as BLAST6Format">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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486 <filter>fmt_finder['output_format'] == 'BLAST6Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6Format')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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487 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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488 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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489 <data name="BooleanSeriesDirectoryFormat" label="${tool.name} on ${on_string} as BooleanSeriesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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490 <filter>fmt_finder['output_format'] == 'BooleanSeriesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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491 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;outliers)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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492 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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493 <data name="BooleanSeriesFormat" label="${tool.name} on ${on_string} as BooleanSeriesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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494 <filter>fmt_finder['output_format'] == 'BooleanSeriesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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495 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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496 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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497 <data name="Bowtie2IndexDirFmt" label="${tool.name} on ${on_string} as Bowtie2IndexDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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498 <filter>fmt_finder['output_format'] == 'Bowtie2IndexDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'Bowtie2IndexDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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499 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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500 <discover_datasets pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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501 <discover_datasets pattern="(?P&lt;designation&gt;.+\.3)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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502 <discover_datasets pattern="(?P&lt;designation&gt;.+\.4)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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503 <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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504 <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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505 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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506 <collection name="CasavaOneEightSingleLanePerSampleDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as CasavaOneEightSingleLanePerSampleDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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507 <filter>fmt_finder['output_format'] == 'CasavaOneEightSingleLanePerSampleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'CasavaOneEightSingleLanePerSampleDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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508 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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509 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
510 <data name="DADA2StatsDirFmt" label="${tool.name} on ${on_string} as DADA2StatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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511 <filter>fmt_finder['output_format'] == 'DADA2StatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
512 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
513 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
514 <data name="DADA2StatsFormat" label="${tool.name} on ${on_string} as DADA2StatsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
515 <filter>fmt_finder['output_format'] == 'DADA2StatsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
516 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
517 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
518 <data name="DNAFASTAFormat" label="${tool.name} on ${on_string} as DNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
519 <filter>fmt_finder['output_format'] == 'DNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
520 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
521 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
522 <data name="DNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as DNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
523 <filter>fmt_finder['output_format'] == 'DNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
524 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
525 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
526 <data name="DeblurStatsDirFmt" label="${tool.name} on ${on_string} as DeblurStatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
527 <filter>fmt_finder['output_format'] == 'DeblurStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
528 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
529 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
530 <data name="DeblurStatsFmt" label="${tool.name} on ${on_string} as DeblurStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
531 <filter>fmt_finder['output_format'] == 'DeblurStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
532 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
533 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
534 <data name="DifferentialDirectoryFormat" label="${tool.name} on ${on_string} as DifferentialDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
535 <filter>fmt_finder['output_format'] == 'DifferentialDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
536 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;differentials)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
537 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
538 <data name="DifferentialFormat" label="${tool.name} on ${on_string} as DifferentialFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
539 <filter>fmt_finder['output_format'] == 'DifferentialFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
540 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
541 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
542 <data name="DistanceMatrixDirectoryFormat" label="${tool.name} on ${on_string} as DistanceMatrixDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
543 <filter>fmt_finder['output_format'] == 'DistanceMatrixDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DistanceMatrixDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
544 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;distance-matrix)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
545 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
546 <data name="EMPPairedEndDirFmt" label="${tool.name} on ${on_string} as EMPPairedEndDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
547 <filter>fmt_finder['output_format'] == 'EMPPairedEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPPairedEndDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
548 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
549 <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
550 <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
551 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
552 <data name="EMPSingleEndDirFmt" label="${tool.name} on ${on_string} as EMPSingleEndDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
553 <filter>fmt_finder['output_format'] == 'EMPSingleEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPSingleEndDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
554 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sequences)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
555 <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
556 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
557 <data name="ErrorCorrectionDetailsDirFmt" label="${tool.name} on ${on_string} as ErrorCorrectionDetailsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
558 <filter>fmt_finder['output_format'] == 'ErrorCorrectionDetailsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ErrorCorrectionDetailsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
559 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;details)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
560 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
561 <data name="FastqGzFormat" label="${tool.name} on ${on_string} as FastqGzFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
562 <filter>fmt_finder['output_format'] == 'FastqGzFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FastqGzFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
563 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
564 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
565 <data name="FirstDifferencesDirectoryFormat" label="${tool.name} on ${on_string} as FirstDifferencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
566 <filter>fmt_finder['output_format'] == 'FirstDifferencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
567 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;FirstDifferences)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
568 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
569 <data name="FirstDifferencesFormat" label="${tool.name} on ${on_string} as FirstDifferencesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
570 <filter>fmt_finder['output_format'] == 'FirstDifferencesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
571 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
572 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
573 <data name="ImportanceDirectoryFormat" label="${tool.name} on ${on_string} as ImportanceDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
574 <filter>fmt_finder['output_format'] == 'ImportanceDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
575 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;importance)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
576 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
577 <data name="ImportanceFormat" label="${tool.name} on ${on_string} as ImportanceFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
578 <filter>fmt_finder['output_format'] == 'ImportanceFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
579 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
580 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
581 <data name="LSMatFormat" label="${tool.name} on ${on_string} as LSMatFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
582 <filter>fmt_finder['output_format'] == 'LSMatFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'LSMatFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
583 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
584 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
585 <data name="MultiplexedPairedEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedPairedEndBarcodeInSequenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
586 <filter>fmt_finder['output_format'] == 'MultiplexedPairedEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedPairedEndBarcodeInSequenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
587 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
588 <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
589 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
590 <data name="MultiplexedSingleEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedSingleEndBarcodeInSequenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
591 <filter>fmt_finder['output_format'] == 'MultiplexedSingleEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedSingleEndBarcodeInSequenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
592 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
593 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
594 <data name="NewickDirectoryFormat" label="${tool.name} on ${on_string} as NewickDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
595 <filter>fmt_finder['output_format'] == 'NewickDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
596 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
597 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
598 <data name="NewickFormat" label="${tool.name} on ${on_string} as NewickFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
599 <filter>fmt_finder['output_format'] == 'NewickFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
600 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
601 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
602 <data name="OrdinationDirectoryFormat" label="${tool.name} on ${on_string} as OrdinationDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
603 <filter>fmt_finder['output_format'] == 'OrdinationDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
604 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ordination)\.(?P&lt;ext&gt;txt)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
605 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
606 <data name="OrdinationFormat" label="${tool.name} on ${on_string} as OrdinationFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
607 <filter>fmt_finder['output_format'] == 'OrdinationFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
608 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
609 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
610 <data name="PairedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedDNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
611 <filter>fmt_finder['output_format'] == 'PairedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedDNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
612 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
613 <discover_datasets pattern="(?P&lt;designation&gt;right-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
614 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
615 <data name="PairedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedRNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
616 <filter>fmt_finder['output_format'] == 'PairedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedRNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
617 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
618 <discover_datasets pattern="(?P&lt;designation&gt;right-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
619 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
620 <data name="PlacementsDirFmt" label="${tool.name} on ${on_string} as PlacementsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
621 <filter>fmt_finder['output_format'] == 'PlacementsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
622 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;placements)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
623 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
624 <data name="PlacementsFormat" label="${tool.name} on ${on_string} as PlacementsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
625 <filter>fmt_finder['output_format'] == 'PlacementsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
626 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
627 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
628 <data name="PredictionsDirectoryFormat" label="${tool.name} on ${on_string} as PredictionsDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
629 <filter>fmt_finder['output_format'] == 'PredictionsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
630 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;predictions)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
631 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
632 <data name="PredictionsFormat" label="${tool.name} on ${on_string} as PredictionsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
633 <filter>fmt_finder['output_format'] == 'PredictionsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
634 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
635 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
636 <data name="ProbabilitiesDirectoryFormat" label="${tool.name} on ${on_string} as ProbabilitiesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
637 <filter>fmt_finder['output_format'] == 'ProbabilitiesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
638 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;class_probabilities)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
639 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
640 <data name="ProbabilitiesFormat" label="${tool.name} on ${on_string} as ProbabilitiesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
641 <filter>fmt_finder['output_format'] == 'ProbabilitiesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
642 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
643 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
644 <data name="ProcrustesStatisticsDirFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
645 <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
646 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ProcrustesStatistics)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
647 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
648 <data name="ProcrustesStatisticsFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
649 <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
650 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
651 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
652 <data name="ProteinFASTAFormat" label="${tool.name} on ${on_string} as ProteinFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
653 <filter>fmt_finder['output_format'] == 'ProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
654 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
655 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
656 <data name="ProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as ProteinSequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
657 <filter>fmt_finder['output_format'] == 'ProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinSequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
658 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
659 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
660 <data name="QIIME1DemuxDirFmt" label="${tool.name} on ${on_string} as QIIME1DemuxDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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661 <filter>fmt_finder['output_format'] == 'QIIME1DemuxDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
662 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;seqs)\.(?P&lt;ext&gt;fna)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
663 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
664 <data name="QIIME1DemuxFormat" label="${tool.name} on ${on_string} as QIIME1DemuxFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
665 <filter>fmt_finder['output_format'] == 'QIIME1DemuxFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
666 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
667 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
668 <data name="QualityFilterStatsDirFmt" label="${tool.name} on ${on_string} as QualityFilterStatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
669 <filter>fmt_finder['output_format'] == 'QualityFilterStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
670 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
671 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
672 <data name="QualityFilterStatsFmt" label="${tool.name} on ${on_string} as QualityFilterStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
673 <filter>fmt_finder['output_format'] == 'QualityFilterStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
674 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
675 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
676 <data name="RNAFASTAFormat" label="${tool.name} on ${on_string} as RNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
677 <filter>fmt_finder['output_format'] == 'RNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
678 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
679 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
680 <data name="RNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as RNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
681 <filter>fmt_finder['output_format'] == 'RNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
682 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
683 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
684 <data name="SampleEstimatorDirFmt" label="${tool.name} on ${on_string} as SampleEstimatorDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
685 <filter>fmt_finder['output_format'] == 'SampleEstimatorDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SampleEstimatorDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
686 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
687 <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
688 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
689 <data name="SeppReferenceDirFmt" label="${tool.name} on ${on_string} as SeppReferenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
690 <filter>fmt_finder['output_format'] == 'SeppReferenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SeppReferenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
691 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
692 <discover_datasets pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
693 <discover_datasets pattern="(?P&lt;designation&gt;raxml-info)\.(?P&lt;ext&gt;txt)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
694 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
695 <collection name="SingleLanePerSamplePairedEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
696 <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
697 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
698 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
699 <data name="SingleLanePerSamplePairedEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
700 <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
701 <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
702 <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
703 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
704 <collection name="SingleLanePerSampleSingleEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
705 <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
706 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
707 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
708 <data name="SingleLanePerSampleSingleEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
709 <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
710 <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
711 <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
712 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
713 <data name="TSVTaxonomyDirectoryFormat" label="${tool.name} on ${on_string} as TSVTaxonomyDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
714 <filter>fmt_finder['output_format'] == 'TSVTaxonomyDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
715 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;taxonomy)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
716 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
717 <data name="TSVTaxonomyFormat" label="${tool.name} on ${on_string} as TSVTaxonomyFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
718 <filter>fmt_finder['output_format'] == 'TSVTaxonomyFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
719 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
720 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
721 <data name="TaxonomicClassiferTemporaryPickleDirFmt" label="${tool.name} on ${on_string} as TaxonomicClassiferTemporaryPickleDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
722 <filter>fmt_finder['output_format'] == 'TaxonomicClassiferTemporaryPickleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TaxonomicClassiferTemporaryPickleDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
723 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
724 <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
725 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
726 <data name="TrueTargetsDirectoryFormat" label="${tool.name} on ${on_string} as TrueTargetsDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
727 <filter>fmt_finder['output_format'] == 'TrueTargetsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TrueTargetsDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
728 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;true_targets)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
729 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
730 <data name="UchimeStatsDirFmt" label="${tool.name} on ${on_string} as UchimeStatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
731 <filter>fmt_finder['output_format'] == 'UchimeStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
732 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
733 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
734 <data name="UchimeStatsFmt" label="${tool.name} on ${on_string} as UchimeStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
735 <filter>fmt_finder['output_format'] == 'UchimeStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
736 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
737 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
738 </outputs>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
739 <help>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
740 QIIME 2: tools export
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
741 =====================
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
742 Export a QIIME 2 artifact to different formats
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
743
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
744 Instructions
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
745 ------------
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
746
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
747 1. Select the QZA you would like to export. Once selected, two fields will
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
748 update indicating the type and format of this QZA.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
749
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
750 2. If you wish to change the output format, first provide the same type as
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
751 the QZA (which is shown above). This will filter the avaiable formats.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
752
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
753 3. Select the format you desire. Some limited documentation is available on
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
754 these formats below.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
755
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
756 **IMPORTANT:** if you select the wrong type when exporting, you will recieve an
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
757 error suggesting "No transformation from &lt;X&gt; to &lt;Y&gt;".
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
758
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
759 Formats:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
760 --------
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
761 These formats have documentation available.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
762
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
763 TSVTaxonomyFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
764 *****************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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765 Format for a 2+ column TSV file with an expected minimal header.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
766
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
767 The only header recognized by this format is:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
768
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
769 Feature ID&lt;tab&gt;Taxon
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
770
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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771 Optionally followed by other arbitrary columns.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
772
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
773 This format supports blank lines. The expected header must be the first
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
774 non-blank line. In addition to the header, there must be at least one line
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
775 of data.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
776
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
777
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
778 QIIME1DemuxFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
779 *****************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
780 QIIME 1 demultiplexed FASTA format.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
781
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
782 The QIIME 1 demultiplexed FASTA format is the default output format of
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
783 ``split_libraries.py`` and ``split_libraries_fastq.py``. The file output by
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
784 QIIME 1 is named ``seqs.fna``; this filename is sometimes associated with
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
785 the file format itself due to its widespread usage in QIIME 1.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
786
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
787 The format is documented here:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
788 http://qiime.org/documentation/file_formats.html#demultiplexed-sequences
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
789
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
790 Format details:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
791
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
792 - FASTA file with exactly two lines per record: header and sequence. Each
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
793 sequence must span exactly one line and cannot be split across multiple
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
794 lines.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
795
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
796 - The ID in each header must follow the format ``&lt;sample-id&gt;_&lt;seq-id&gt;``.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
797 ``&lt;sample-id&gt;`` is the identifier of the sample the sequence belongs to,
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
798 and ``&lt;seq-id&gt;`` is an identifier for the sequence *within* its sample.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
799 In QIIME 1, ``&lt;seq-id&gt;`` is typically an incrementing integer starting
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
800 from zero, but any non-empty value can be used here, as long as the
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
801 header IDs remain unique throughout the file. Note: ``&lt;sample-id&gt;`` may
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
802 contain sample IDs that contain underscores; the rightmost underscore
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
803 will used to delimit sample and sequence IDs.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
804
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
805 - Descriptions in headers are permitted and ignored.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
806
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
807 - Header IDs must be unique within the file.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
808
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
809 - Each sequence must be DNA and cannot be empty.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
810
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
811
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
812 FastqGzFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
813 *************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
814
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
815 A gzipped fastq file.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
816
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
817
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
818 Additional formats without documentation:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
819 *****************************************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
820 - AlignedRNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
821 - MultiplexedSingleEndBarcodeInSequenceDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
822 - AlignedDNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
823 - NewickFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
824 - SeppReferenceDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
825 - ProcrustesStatisticsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
826 - PairedRNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
827 - BIOMV210DirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
828 - EMPPairedEndDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
829 - DistanceMatrixDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
830 - AlphaDiversityDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
831 - OrdinationDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
832 - ArtificialGroupingFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
833 - BLAST6Format
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
834 - RNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
835 - ProbabilitiesFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
836 - PlacementsFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
837 - DADA2StatsFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
838 - SampleEstimatorDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
839 - ImportanceFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
840 - AlignedProteinFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
841 - DNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
842 - BIOMV210Format
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
843 - TSVTaxonomyDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
844 - QualityFilterStatsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
845 - SingleLanePerSampleSingleEndFastqDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
846 - CasavaOneEightSingleLanePerSampleDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
847 - ProteinFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
848 - ProbabilitiesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
849 - DADA2StatsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
850 - Bowtie2IndexDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
851 - DifferentialFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
852 - QIIME1DemuxDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
853 - UchimeStatsFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
854 - DeblurStatsFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
855 - DeblurStatsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
856 - AlignedRNAFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
857 - NewickDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
858 - EMPSingleEndDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
859 - PredictionsDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
860 - AlignedDNAFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
861 - ArtificialGroupingDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
862 - FirstDifferencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
863 - ProcrustesStatisticsFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
864 - FirstDifferencesFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
865 - BLAST6DirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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866 - PairedDNASequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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867 - ErrorCorrectionDetailsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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868 - MultiplexedPairedEndBarcodeInSequenceDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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869 - LSMatFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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870 - AlphaDiversityFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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871 - PlacementsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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872 - OrdinationFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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873 - BooleanSeriesFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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874 - ImportanceDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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875 - AlignedProteinSequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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876 - RNAFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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877 - SingleLanePerSamplePairedEndFastqDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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878 - TaxonomicClassiferTemporaryPickleDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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879 - PredictionsFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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880 - TrueTargetsDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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881 - ProteinSequencesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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882 - DNAFASTAFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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883 - QualityFilterStatsFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
884 - BooleanSeriesDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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885 - DifferentialDirectoryFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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886 - UchimeStatsDirFmt
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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887 </help>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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888 <citations>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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889 <citation type="doi">10.1038/s41587-019-0209-9</citation>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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890 </citations>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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891 </tool>