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comparison qiime2_core__tools__export.xml @ 2:ddff0f6d5740 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
author q2d2
date Thu, 08 Jun 2023 19:53:25 +0000
parents d3b1853c4efd
children e96704fc516d
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1:d3b1853c4efd 2:ddff0f6d5740
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2022.11.1) 9 q2galaxy (version: 2023.5.0)
10 for: 10 for:
11 qiime2 (version: 2022.11.1) 11 qiime2 (version: 2023.5.1)
12 --> 12 -->
13 <tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2022.11.1+dist.h2bda5906.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2023.5.0+dist.h193f7cc9.2" profile="22.05" license="BSD-3-Clause">
14 <description>Export data from a QIIME 2 artifact</description> 14 <description>Export data from a QIIME 2 artifact</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2022.11</container> 16 <container type="docker">quay.io/qiime2/core:2023.5</container>
17 </requirements> 17 </requirements>
18 <command detect_errors="exit_code">q2galaxy run tools export '$inputs'</command> 18 <command detect_errors="exit_code">q2galaxy run tools export '$inputs'</command>
19 <configfiles> 19 <configfiles>
20 <inputs name="inputs" data_style="paths"/> 20 <inputs name="inputs" data_style="paths"/>
21 </configfiles> 21 </configfiles>
42 <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option> 42 <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option>
43 <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option> 43 <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>
44 <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option> 44 <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>
45 <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option> 45 <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>
46 <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option> 46 <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>
47 <option value="FeatureData__ob__DecontamScore__cb__">FeatureData[DecontamScore]</option>
47 <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option> 48 <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option>
48 <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option> 49 <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>
49 <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option> 50 <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>
50 <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option> 51 <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>
51 <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option> 52 <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>
59 <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option> 60 <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option>
60 <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option> 61 <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option>
61 <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option> 62 <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>
62 <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option> 63 <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>
63 <option value="Hierarchy">Hierarchy</option> 64 <option value="Hierarchy">Hierarchy</option>
65 <option value="ImmutableMetadata">ImmutableMetadata</option>
64 <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option> 66 <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>
65 <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option> 67 <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>
66 <option value="PCoAResults">PCoAResults</option> 68 <option value="PCoAResults">PCoAResults</option>
67 <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option> 69 <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option>
68 <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option> 70 <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option>
151 <param name="output_format" type="select" label="QIIME 2 file format to convert to:"> 153 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
152 <option value="None" selected="true">export as is (no conversion)</option> 154 <option value="None" selected="true">export as is (no conversion)</option>
153 <option value="BLAST6Format">BLAST6 Format</option> 155 <option value="BLAST6Format">BLAST6 Format</option>
154 </param> 156 </param>
155 </when> 157 </when>
158 <when value="FeatureData__ob__DecontamScore__cb__">
159 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
160 <option value="None" selected="true">export as is (no conversion)</option>
161 <option value="DecontamScoreFormat">Decontam Score Format</option>
162 </param>
163 </when>
156 <when value="FeatureData__ob__DifferentialAbundance__cb__"> 164 <when value="FeatureData__ob__DifferentialAbundance__cb__">
157 <param name="output_format" type="select" label="QIIME 2 file format to convert to:"> 165 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
158 <option value="None" selected="true">export as is (no conversion)</option> 166 <option value="None" selected="true">export as is (no conversion)</option>
159 <option value="DataLoafPackageDirFmt">Data Loaf Package Directory Format</option> 167 <option value="DataLoafPackageDirFmt">Data Loaf Package Directory Format</option>
160 </param> 168 </param>
258 </when> 266 </when>
259 <when value="Hierarchy"> 267 <when value="Hierarchy">
260 <param name="output_format" type="select" label="QIIME 2 file format to convert to:"> 268 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
261 <option value="None" selected="true">export as is (no conversion)</option> 269 <option value="None" selected="true">export as is (no conversion)</option>
262 <option value="NewickFormat">Newick Format</option> 270 <option value="NewickFormat">Newick Format</option>
271 </param>
272 </when>
273 <when value="ImmutableMetadata">
274 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
275 <option value="None" selected="true">export as is (no conversion)</option>
276 <option value="ImmutableMetadataFormat">Immutable Metadata Format</option>
263 </param> 277 </param>
264 </when> 278 </when>
265 <when value="MultiplexedPairedEndBarcodeInSequence"> 279 <when value="MultiplexedPairedEndBarcodeInSequence">
266 <param name="output_format" type="select" label="QIIME 2 file format to convert to:"> 280 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
267 <option value="None" selected="true">export as is (no conversion)</option> 281 <option value="None" selected="true">export as is (no conversion)</option>
432 </when> 446 </when>
433 </conditional> 447 </conditional>
434 </inputs> 448 </inputs>
435 <outputs> 449 <outputs>
436 <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}"> 450 <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}">
437 <filter>fmt_finder['output_format'] == 'None' and fmt_peek not in {'TSVTaxonomyDirectoryFormat', 'EMPPairedEndDirFmt', 'AlignedRNASequencesDirectoryFormat', 'AlignedProteinFASTAFormat', 'QualityFilterStatsDirFmt', 'OrdinationFormat', 'DeblurStatsFmt', 'ImportanceDirectoryFormat', 'ArtificialGroupingDirectoryFormat', 'Bowtie2IndexDirFmt', 'BooleanSeriesDirectoryFormat', 'ArtificialGroupingFormat', 'SampleEstimatorDirFmt', 'MultiplexedSingleEndBarcodeInSequenceDirFmt', 'TaxonomicClassiferTemporaryPickleDirFmt', 'AlphaDiversityFormat', 'TrueTargetsDirectoryFormat', 'PairedDNASequencesDirectoryFormat', 'UchimeStatsDirFmt', 'DifferentialFormat', 'AlignedDNASequencesDirectoryFormat', 'PredictionsDirectoryFormat', 'DADA2StatsDirFmt', 'SingleLanePerSamplePairedEndFastqDirFmt', 'DNAFASTAFormat', 'DADA2StatsFormat', 'RNAFASTAFormat', 'AlignedRNAFASTAFormat', 'UchimeStatsFmt', 'ErrorCorrectionDetailsDirFmt', 'FastqGzFormat', 'QIIME1DemuxDirFmt', 'PairedRNASequencesDirectoryFormat', 'ProcrustesStatisticsDirFmt', 'DeblurStatsDirFmt', 'ImportanceFormat', 'AlignedProteinSequencesDirectoryFormat', 'DifferentialDirectoryFormat', 'NewickDirectoryFormat', 'NewickFormat', 'OrdinationDirectoryFormat', 'LSMatFormat', 'BooleanSeriesFormat', 'ProteinFASTAFormat', 'EMPSingleEndDirFmt', 'QIIME1DemuxFormat', 'MultiplexedPairedEndBarcodeInSequenceDirFmt', 'PlacementsFormat', 'PredictionsFormat', 'ProteinSequencesDirectoryFormat', 'QualityFilterStatsFmt', 'CasavaOneEightSingleLanePerSampleDirFmt', 'FirstDifferencesDirectoryFormat', 'FirstDifferencesFormat', 'PlacementsDirFmt', 'DNASequencesDirectoryFormat', 'SeppReferenceDirFmt', 'TSVTaxonomyFormat', 'ProcrustesStatisticsFmt', 'RNASequencesDirectoryFormat', 'BIOMV210DirFmt', 'SingleLanePerSampleSingleEndFastqDirFmt', 'BIOMV210Format', 'AlphaDiversityDirectoryFormat', 'DistanceMatrixDirectoryFormat', 'BLAST6Format', 'AlignedDNAFASTAFormat', 'ProbabilitiesFormat', 'ProbabilitiesDirectoryFormat', 'BLAST6DirectoryFormat', 'DataLoafPackageDirFmt'}</filter> 451 <filter>fmt_finder['output_format'] == 'None' and fmt_peek not in {'QIIME1DemuxFormat', 'DNAFASTAFormat', 'PlacementsDirFmt', 'ImmutableMetadataFormat', 'Bowtie2IndexDirFmt', 'QIIME1DemuxDirFmt', 'AlignedDNASequencesDirectoryFormat', 'DADA2StatsDirFmt', 'AlignedRNASequencesDirectoryFormat', 'OrdinationFormat', 'ProteinFASTAFormat', 'LSMatFormat', 'PairedRNASequencesDirectoryFormat', 'DifferentialFormat', 'MultiplexedPairedEndBarcodeInSequenceDirFmt', 'AlignedProteinFASTAFormat', 'ArtificialGroupingDirectoryFormat', 'RNAFASTAFormat', 'SeppReferenceDirFmt', 'FastqGzFormat', 'ProcrustesStatisticsDirFmt', 'SingleLanePerSampleSingleEndFastqDirFmt', 'QualityFilterStatsFmt', 'PlacementsFormat', 'ProbabilitiesDirectoryFormat', 'ImportanceDirectoryFormat', 'FirstDifferencesFormat', 'TrueTargetsDirectoryFormat', 'ImmutableMetadataDirectoryFormat', 'UchimeStatsDirFmt', 'NewickDirectoryFormat', 'DADA2StatsFormat', 'AlignedDNAFASTAFormat', 'PredictionsDirectoryFormat', 'AlphaDiversityDirectoryFormat', 'MultiplexedSingleEndBarcodeInSequenceDirFmt', 'DeblurStatsDirFmt', 'DNASequencesDirectoryFormat', 'SingleLanePerSamplePairedEndFastqDirFmt', 'UchimeStatsFmt', 'CasavaOneEightSingleLanePerSampleDirFmt', 'ErrorCorrectionDetailsDirFmt', 'BLAST6DirectoryFormat', 'DecontamScoreDirFmt', 'SampleEstimatorDirFmt', 'FirstDifferencesDirectoryFormat', 'QualityFilterStatsDirFmt', 'DistanceMatrixDirectoryFormat', 'DecontamScoreFormat', 'EMPSingleEndDirFmt', 'EMPPairedEndDirFmt', 'DataLoafPackageDirFmt', 'PairedDNASequencesDirectoryFormat', 'BIOMV210DirFmt', 'AlignedRNAFASTAFormat', 'OrdinationDirectoryFormat', 'BIOMV210Format', 'AlphaDiversityFormat', 'ArtificialGroupingFormat', 'DeblurStatsFmt', 'TSVTaxonomyDirectoryFormat', 'PredictionsFormat', 'BooleanSeriesFormat', 'DifferentialDirectoryFormat', 'ProcrustesStatisticsFmt', 'BooleanSeriesDirectoryFormat', 'AlignedProteinSequencesDirectoryFormat', 'TSVTaxonomyFormat', 'NewickFormat', 'ProteinSequencesDirectoryFormat', 'BLAST6Format', 'ImportanceFormat', 'RNASequencesDirectoryFormat', 'TaxonomicClassiferTemporaryPickleDirFmt', 'ProbabilitiesFormat'}</filter>
438 <discover_datasets pattern="__designation_and_ext__" visible="false"/> 452 <discover_datasets pattern="__designation_and_ext__" visible="false"/>
439 </collection> 453 </collection>
440 <data name="AlignedDNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedDNAFASTAFormat"> 454 <data name="AlignedDNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedDNAFASTAFormat">
441 <filter>fmt_finder['output_format'] == 'AlignedDNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNAFASTAFormat')</filter> 455 <filter>fmt_finder['output_format'] == 'AlignedDNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNAFASTAFormat')</filter>
442 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/> 456 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
544 </data> 558 </data>
545 <data name="DeblurStatsFmt" label="${tool.name} on ${on_string} as DeblurStatsFmt"> 559 <data name="DeblurStatsFmt" label="${tool.name} on ${on_string} as DeblurStatsFmt">
546 <filter>fmt_finder['output_format'] == 'DeblurStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsFmt')</filter> 560 <filter>fmt_finder['output_format'] == 'DeblurStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsFmt')</filter>
547 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/> 561 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
548 </data> 562 </data>
563 <data name="DecontamScoreDirFmt" label="${tool.name} on ${on_string} as DecontamScoreDirFmt">
564 <filter>fmt_finder['output_format'] == 'DecontamScoreDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DecontamScoreDirFmt')</filter>
565 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
566 </data>
567 <data name="DecontamScoreFormat" label="${tool.name} on ${on_string} as DecontamScoreFormat">
568 <filter>fmt_finder['output_format'] == 'DecontamScoreFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DecontamScoreFormat')</filter>
569 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
570 </data>
549 <data name="DifferentialDirectoryFormat" label="${tool.name} on ${on_string} as DifferentialDirectoryFormat"> 571 <data name="DifferentialDirectoryFormat" label="${tool.name} on ${on_string} as DifferentialDirectoryFormat">
550 <filter>fmt_finder['output_format'] == 'DifferentialDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialDirectoryFormat')</filter> 572 <filter>fmt_finder['output_format'] == 'DifferentialDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialDirectoryFormat')</filter>
551 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;differentials)\.(?P&lt;ext&gt;tsv)" visible="true"/> 573 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;differentials)\.(?P&lt;ext&gt;tsv)" visible="true"/>
552 </data> 574 </data>
553 <data name="DifferentialFormat" label="${tool.name} on ${on_string} as DifferentialFormat"> 575 <data name="DifferentialFormat" label="${tool.name} on ${on_string} as DifferentialFormat">
581 <filter>fmt_finder['output_format'] == 'FirstDifferencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesDirectoryFormat')</filter> 603 <filter>fmt_finder['output_format'] == 'FirstDifferencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesDirectoryFormat')</filter>
582 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;FirstDifferences)\.(?P&lt;ext&gt;tsv)" visible="true"/> 604 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;FirstDifferences)\.(?P&lt;ext&gt;tsv)" visible="true"/>
583 </data> 605 </data>
584 <data name="FirstDifferencesFormat" label="${tool.name} on ${on_string} as FirstDifferencesFormat"> 606 <data name="FirstDifferencesFormat" label="${tool.name} on ${on_string} as FirstDifferencesFormat">
585 <filter>fmt_finder['output_format'] == 'FirstDifferencesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesFormat')</filter> 607 <filter>fmt_finder['output_format'] == 'FirstDifferencesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesFormat')</filter>
608 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
609 </data>
610 <data name="ImmutableMetadataDirectoryFormat" label="${tool.name} on ${on_string} as ImmutableMetadataDirectoryFormat">
611 <filter>fmt_finder['output_format'] == 'ImmutableMetadataDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImmutableMetadataDirectoryFormat')</filter>
612 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;tsv)" visible="true"/>
613 </data>
614 <data name="ImmutableMetadataFormat" label="${tool.name} on ${on_string} as ImmutableMetadataFormat">
615 <filter>fmt_finder['output_format'] == 'ImmutableMetadataFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImmutableMetadataFormat')</filter>
586 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/> 616 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
587 </data> 617 </data>
588 <data name="ImportanceDirectoryFormat" label="${tool.name} on ${on_string} as ImportanceDirectoryFormat"> 618 <data name="ImportanceDirectoryFormat" label="${tool.name} on ${on_string} as ImportanceDirectoryFormat">
589 <filter>fmt_finder['output_format'] == 'ImportanceDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceDirectoryFormat')</filter> 619 <filter>fmt_finder['output_format'] == 'ImportanceDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceDirectoryFormat')</filter>
590 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;importance)\.(?P&lt;ext&gt;tsv)" visible="true"/> 620 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;importance)\.(?P&lt;ext&gt;tsv)" visible="true"/>
773 803
774 Formats: 804 Formats:
775 -------- 805 --------
776 These formats have documentation available. 806 These formats have documentation available.
777 807
778 TSVTaxonomyFormat
779 *****************
780 Format for a 2+ column TSV file with an expected minimal header.
781
782 The only header recognized by this format is:
783
784 Feature ID&lt;tab&gt;Taxon
785
786 Optionally followed by other arbitrary columns.
787
788 This format supports blank lines. The expected header must be the first
789 non-blank line. In addition to the header, there must be at least one line
790 of data.
791
792
793 QIIME1DemuxFormat 808 QIIME1DemuxFormat
794 ***************** 809 *****************
795 QIIME 1 demultiplexed FASTA format. 810 QIIME 1 demultiplexed FASTA format.
796 811
797 The QIIME 1 demultiplexed FASTA format is the default output format of 812 The QIIME 1 demultiplexed FASTA format is the default output format of
822 - Header IDs must be unique within the file. 837 - Header IDs must be unique within the file.
823 838
824 - Each sequence must be DNA and cannot be empty. 839 - Each sequence must be DNA and cannot be empty.
825 840
826 841
842 TSVTaxonomyFormat
843 *****************
844 Format for a 2+ column TSV file with an expected minimal header.
845
846 The only header recognized by this format is:
847
848 Feature ID&lt;tab&gt;Taxon
849
850 Optionally followed by other arbitrary columns.
851
852 This format supports blank lines. The expected header must be the first
853 non-blank line. In addition to the header, there must be at least one line
854 of data.
855
856
827 FastqGzFormat 857 FastqGzFormat
828 ************* 858 *************
829 859
830 A gzipped fastq file. 860 A gzipped fastq file.
831 861
832 862
833 Additional formats without documentation: 863 Additional formats without documentation:
834 ***************************************** 864 *****************************************
835 - QIIME1DemuxDirFmt 865 - FirstDifferencesFormat
836 - ArtificialGroupingDirectoryFormat 866 - DecontamScoreDirFmt
837 - DeblurStatsFmt 867 - OrdinationDirectoryFormat
838 - DADA2StatsFormat 868 - EMPPairedEndDirFmt
839 - ImportanceDirectoryFormat 869 - ImmutableMetadataFormat
840 - BIOMV210Format 870 - PredictionsDirectoryFormat
841 - AlphaDiversityDirectoryFormat 871 - AlphaDiversityDirectoryFormat
872 - DataLoafPackageDirFmt
842 - AlignedDNAFASTAFormat 873 - AlignedDNAFASTAFormat
843 - DataLoafPackageDirFmt 874 - DADA2StatsDirFmt
844 - MultiplexedSingleEndBarcodeInSequenceDirFmt 875 - TrueTargetsDirectoryFormat
845 - QualityFilterStatsDirFmt 876 - UchimeStatsFmt
846 - BLAST6Format 877 - BLAST6Format
847 - PairedDNASequencesDirectoryFormat 878 - PairedDNASequencesDirectoryFormat
848 - EMPPairedEndDirFmt 879 - QIIME1DemuxDirFmt
849 - NewickDirectoryFormat 880 - QualityFilterStatsFmt
881 - DADA2StatsFormat
882 - AlignedProteinFASTAFormat
850 - PlacementsFormat 883 - PlacementsFormat
851 - FirstDifferencesDirectoryFormat 884 - NewickFormat
852 - AlignedProteinFASTAFormat 885 - ProbabilitiesDirectoryFormat
853 - BIOMV210DirFmt 886 - ErrorCorrectionDetailsDirFmt
854 - DistanceMatrixDirectoryFormat
855 - TSVTaxonomyDirectoryFormat
856 - FirstDifferencesFormat
857 - TrueTargetsDirectoryFormat
858 - Bowtie2IndexDirFmt
859 - ProcrustesStatisticsFmt
860 - ProteinFASTAFormat 887 - ProteinFASTAFormat
861 - RNAFASTAFormat 888 - RNAFASTAFormat
862 - ProbabilitiesDirectoryFormat 889 - MultiplexedSingleEndBarcodeInSequenceDirFmt
863 - SingleLanePerSampleSingleEndFastqDirFmt 890 - BooleanSeriesFormat
864 - OrdinationFormat 891 - LSMatFormat
892 - ImportanceDirectoryFormat
893 - DeblurStatsFmt
865 - AlignedRNASequencesDirectoryFormat 894 - AlignedRNASequencesDirectoryFormat
866 - PlacementsDirFmt 895 - QualityFilterStatsDirFmt
867 - TaxonomicClassiferTemporaryPickleDirFmt 896 - TaxonomicClassiferTemporaryPickleDirFmt
868 - ArtificialGroupingFormat 897 - BooleanSeriesDirectoryFormat
869 - CasavaOneEightSingleLanePerSampleDirFmt
870 - ImportanceFormat
871 - DifferentialDirectoryFormat 898 - DifferentialDirectoryFormat
872 - DNAFASTAFormat 899 - DNAFASTAFormat
873 - DADA2StatsDirFmt 900 - ProcrustesStatisticsFmt
874 - BooleanSeriesDirectoryFormat 901 - PlacementsDirFmt
902 - EMPSingleEndDirFmt
903 - DecontamScoreFormat
904 - BIOMV210DirFmt
905 - ImmutableMetadataDirectoryFormat
875 - AlignedDNASequencesDirectoryFormat 906 - AlignedDNASequencesDirectoryFormat
876 - PredictionsFormat 907 - TSVTaxonomyDirectoryFormat
877 - MultiplexedPairedEndBarcodeInSequenceDirFmt 908 - OrdinationFormat
878 - AlphaDiversityFormat 909 - FirstDifferencesDirectoryFormat
879 - ProbabilitiesFormat 910 - Bowtie2IndexDirFmt
880 - EMPSingleEndDirFmt 911 - BIOMV210Format
881 - BLAST6DirectoryFormat 912 - SingleLanePerSampleSingleEndFastqDirFmt
913 - SampleEstimatorDirFmt
882 - PairedRNASequencesDirectoryFormat 914 - PairedRNASequencesDirectoryFormat
883 - PredictionsDirectoryFormat 915 - CasavaOneEightSingleLanePerSampleDirFmt
884 - UchimeStatsFmt
885 - AlignedProteinSequencesDirectoryFormat 916 - AlignedProteinSequencesDirectoryFormat
886 - NewickFormat
887 - UchimeStatsDirFmt 917 - UchimeStatsDirFmt
888 - SampleEstimatorDirFmt 918 - NewickDirectoryFormat
889 - ProcrustesStatisticsDirFmt 919 - SingleLanePerSamplePairedEndFastqDirFmt
890 - DifferentialFormat 920 - DifferentialFormat
891 - ProteinSequencesDirectoryFormat 921 - ProteinSequencesDirectoryFormat
892 - RNASequencesDirectoryFormat 922 - RNASequencesDirectoryFormat
893 - LSMatFormat 923 - MultiplexedPairedEndBarcodeInSequenceDirFmt
894 - SingleLanePerSamplePairedEndFastqDirFmt 924 - AlphaDiversityFormat
895 - QualityFilterStatsFmt 925 - DistanceMatrixDirectoryFormat
896 - OrdinationDirectoryFormat 926 - ArtificialGroupingFormat
897 - ErrorCorrectionDetailsDirFmt 927 - ArtificialGroupingDirectoryFormat
928 - ProbabilitiesFormat
929 - DeblurStatsDirFmt
930 - SeppReferenceDirFmt
931 - ImportanceFormat
932 - BLAST6DirectoryFormat
898 - AlignedRNAFASTAFormat 933 - AlignedRNAFASTAFormat
899 - DNASequencesDirectoryFormat 934 - DNASequencesDirectoryFormat
900 - BooleanSeriesFormat 935 - ProcrustesStatisticsDirFmt
901 - SeppReferenceDirFmt 936 - PredictionsFormat
902 - DeblurStatsDirFmt
903 </help> 937 </help>
904 <citations> 938 <citations>
905 <citation type="doi">10.1038/s41587-019-0209-9</citation> 939 <citation type="doi">10.1038/s41587-019-0209-9</citation>
906 </citations> 940 </citations>
907 </tool> 941 </tool>