annotate qiime2_core__tools__export.xml @ 2:ddff0f6d5740 draft

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author q2d2
date Thu, 08 Jun 2023 19:53:25 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2023, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2023.5.0)
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10 for:
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11 qiime2 (version: 2023.5.1)
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12 -->
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13 <tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2023.5.0+dist.h193f7cc9.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Export data from a QIIME 2 artifact</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2023.5</container>
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17 </requirements>
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18 <command detect_errors="exit_code">q2galaxy run tools export '$inputs'</command>
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19 <configfiles>
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20 <inputs name="inputs" data_style="paths"/>
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21 </configfiles>
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22 <inputs>
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23 <param name="input" type="data" format="qza" label="input: The path to the artifact you want to export"/>
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24 <param name="type_peek" type="select" label="The type of your input qza is:" display="radio">
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25 <options>
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26 <filter type="data_meta" key="semantic_type" ref="input"/>
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27 </options>
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28 </param>
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29 <param name="fmt_peek" type="select" label="The current QIIME 2 format is:" display="radio">
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30 <options>
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31 <filter type="data_meta" key="format" ref="input"/>
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32 </options>
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33 </param>
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34 <conditional name="fmt_finder">
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35 <param name="type" type="select" label="To change the format, select the type indicated above:">
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36 <option value="None" selected="true">export as is (no conversion)</option>
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37 <option value="Bowtie2Index">Bowtie2Index</option>
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38 <option value="DeblurStats">DeblurStats</option>
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39 <option value="DistanceMatrix">DistanceMatrix</option>
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40 <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>
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41 <option value="EMPSingleEndSequences">EMPSingleEndSequences</option>
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42 <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option>
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43 <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>
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44 <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>
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45 <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>
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46 <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>
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47 <option value="FeatureData__ob__DecontamScore__cb__">FeatureData[DecontamScore]</option>
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48 <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option>
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49 <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>
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50 <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>
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51 <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>
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52 <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>
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53 <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>
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54 <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option>
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55 <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option>
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56 <option value="FeatureData__ob__Taxonomy__cb__">FeatureData[Taxonomy]</option>
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57 <option value="FeatureTable__ob__Balance__cb__">FeatureTable[Balance]</option>
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58 <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option>
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59 <option value="FeatureTable__ob__Design__cb__">FeatureTable[Design]</option>
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60 <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option>
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61 <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option>
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62 <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>
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63 <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>
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64 <option value="Hierarchy">Hierarchy</option>
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65 <option value="ImmutableMetadata">ImmutableMetadata</option>
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66 <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>
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67 <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>
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68 <option value="PCoAResults">PCoAResults</option>
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69 <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option>
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70 <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option>
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71 <option value="Placements">Placements</option>
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72 <option value="ProcrustesStatistics">ProcrustesStatistics</option>
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73 <option value="QualityFilterStats">QualityFilterStats</option>
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74 <option value="RawSequences">RawSequences</option>
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75 <option value="SampleData__ob__AlphaDiversity__cb__">SampleData[AlphaDiversity]</option>
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76 <option value="SampleData__ob__ArtificialGrouping__cb__">SampleData[ArtificialGrouping]</option>
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77 <option value="SampleData__ob__BooleanSeries__cb__">SampleData[BooleanSeries]</option>
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78 <option value="SampleData__ob__ClassifierPredictions__cb__">SampleData[ClassifierPredictions]</option>
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79 <option value="SampleData__ob__DADA2Stats__cb__">SampleData[DADA2Stats]</option>
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80 <option value="SampleData__ob__FirstDifferences__cb__">SampleData[FirstDifferences]</option>
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81 <option value="SampleData__ob__JoinedSequencesWithQuality__cb__">SampleData[JoinedSequencesWithQuality]</option>
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82 <option value="SampleData__ob__PairedEndSequencesWithQuality__cb__">SampleData[PairedEndSequencesWithQuality]</option>
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83 <option value="SampleData__ob__Probabilities__cb__">SampleData[Probabilities]</option>
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84 <option value="SampleData__ob__RegressorPredictions__cb__">SampleData[RegressorPredictions]</option>
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85 <option value="SampleData__ob__SequencesWithQuality__cb__">SampleData[SequencesWithQuality]</option>
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86 <option value="SampleData__ob__Sequences__cb__">SampleData[Sequences]</option>
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87 <option value="SampleData__ob__TrueTargets__cb__">SampleData[TrueTargets]</option>
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88 <option value="SampleEstimator__ob__Classifier__cb__">SampleEstimator[Classifier]</option>
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89 <option value="SampleEstimator__ob__Regressor__cb__">SampleEstimator[Regressor]</option>
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90 <option value="SeppReferenceDatabase">SeppReferenceDatabase</option>
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91 <option value="TaxonomicClassifier">TaxonomicClassifier</option>
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92 <option value="UchimeStats">UchimeStats</option>
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93 </param>
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94 <when value="None">
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95 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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96 <option value="None" selected="true">export as is (no conversion)</option>
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97 </param>
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98 </when>
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99 <when value="Bowtie2Index">
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100 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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101 <option value="None" selected="true">export as is (no conversion)</option>
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102 <option value="Bowtie2IndexDirFmt">Bowtie2 Index Directory Format</option>
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103 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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104 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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105 <when value="DeblurStats">
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106 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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107 <option value="None" selected="true">export as is (no conversion)</option>
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108 <option value="DeblurStatsFmt">Deblur Stats Format</option>
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109 </param>
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110 </when>
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111 <when value="DistanceMatrix">
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112 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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113 <option value="None" selected="true">export as is (no conversion)</option>
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114 <option value="LSMatFormat">LS Mat Format</option>
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115 </param>
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116 </when>
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117 <when value="EMPPairedEndSequences">
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118 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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119 <option value="None" selected="true">export as is (no conversion)</option>
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120 <option value="EMPPairedEndDirFmt">EMP Paired End Directory Format</option>
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121 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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122 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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123 <when value="EMPSingleEndSequences">
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124 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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125 <option value="None" selected="true">export as is (no conversion)</option>
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126 <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
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127 </param>
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128 </when>
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129 <when value="ErrorCorrectionDetails">
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130 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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131 <option value="None" selected="true">export as is (no conversion)</option>
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132 </param>
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133 </when>
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134 <when value="FeatureData__ob__AlignedProteinSequence__cb__">
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135 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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136 <option value="None" selected="true">export as is (no conversion)</option>
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137 <option value="AlignedProteinFASTAFormat">Aligned Protein FASTA Format</option>
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138 </param>
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139 </when>
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140 <when value="FeatureData__ob__AlignedRNASequence__cb__">
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141 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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142 <option value="None" selected="true">export as is (no conversion)</option>
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143 <option value="AlignedRNAFASTAFormat">Aligned RNAFASTA Format</option>
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144 </param>
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145 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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146 <when value="FeatureData__ob__AlignedSequence__cb__">
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147 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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148 <option value="None" selected="true">export as is (no conversion)</option>
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149 <option value="AlignedDNAFASTAFormat">Aligned DNAFASTA Format</option>
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150 </param>
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151 </when>
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152 <when value="FeatureData__ob__BLAST6__cb__">
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153 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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154 <option value="None" selected="true">export as is (no conversion)</option>
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155 <option value="BLAST6Format">BLAST6 Format</option>
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156 </param>
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157 </when>
2
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158 <when value="FeatureData__ob__DecontamScore__cb__">
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159 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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160 <option value="None" selected="true">export as is (no conversion)</option>
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161 <option value="DecontamScoreFormat">Decontam Score Format</option>
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162 </param>
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163 </when>
1
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164 <when value="FeatureData__ob__DifferentialAbundance__cb__">
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165 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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166 <option value="None" selected="true">export as is (no conversion)</option>
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167 <option value="DataLoafPackageDirFmt">Data Loaf Package Directory Format</option>
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168 </param>
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169 </when>
0
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170 <when value="FeatureData__ob__Differential__cb__">
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171 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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172 <option value="None" selected="true">export as is (no conversion)</option>
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173 <option value="DifferentialFormat">Differential Format</option>
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174 </param>
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175 </when>
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176 <when value="FeatureData__ob__Importance__cb__">
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177 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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178 <option value="None" selected="true">export as is (no conversion)</option>
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179 <option value="ImportanceFormat">Importance Format</option>
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180 </param>
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181 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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182 <when value="FeatureData__ob__PairedEndRNASequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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183 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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184 <option value="None" selected="true">export as is (no conversion)</option>
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185 <option value="PairedRNASequencesDirectoryFormat">Paired RNA Sequences Directory Format</option>
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186 </param>
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187 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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188 <when value="FeatureData__ob__PairedEndSequence__cb__">
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189 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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190 <option value="None" selected="true">export as is (no conversion)</option>
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191 <option value="PairedDNASequencesDirectoryFormat">Paired DNA Sequences Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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192 </param>
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193 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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194 <when value="FeatureData__ob__ProteinSequence__cb__">
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195 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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196 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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197 <option value="ProteinFASTAFormat">Protein FASTA Format</option>
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198 </param>
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199 </when>
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200 <when value="FeatureData__ob__RNASequence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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201 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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202 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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203 <option value="RNAFASTAFormat">RNAFASTA Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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204 </param>
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205 </when>
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206 <when value="FeatureData__ob__Sequence__cb__">
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207 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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208 <option value="None" selected="true">export as is (no conversion)</option>
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209 <option value="DNAFASTAFormat">DNAFASTA Format</option>
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210 </param>
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211 </when>
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212 <when value="FeatureData__ob__Taxonomy__cb__">
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213 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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214 <option value="None" selected="true">export as is (no conversion)</option>
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215 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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216 </param>
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217 </when>
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218 <when value="FeatureTable__ob__Balance__cb__">
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219 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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220 <option value="None" selected="true">export as is (no conversion)</option>
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221 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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222 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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223 </param>
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224 </when>
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225 <when value="FeatureTable__ob__Composition__cb__">
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226 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
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227 <option value="None" selected="true">export as is (no conversion)</option>
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228 <option value="BIOMV210Format">BIOMV210 Format</option>
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229 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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230 </param>
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231 </when>
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232 <when value="FeatureTable__ob__Design__cb__">
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233 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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234 <option value="None" selected="true">export as is (no conversion)</option>
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235 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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236 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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237 </param>
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238 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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239 <when value="FeatureTable__ob__Frequency__cb__">
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240 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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241 <option value="None" selected="true">export as is (no conversion)</option>
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242 <option value="BIOMV210Format">BIOMV210 Format</option>
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243 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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244 </param>
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245 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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246 <when value="FeatureTable__ob__PercentileNormalized__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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247 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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248 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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249 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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250 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
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251 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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252 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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253 <when value="FeatureTable__ob__PresenceAbsence__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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254 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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255 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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256 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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257 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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258 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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259 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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260 <when value="FeatureTable__ob__RelativeFrequency__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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261 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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262 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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263 <option value="BIOMV210Format">BIOMV210 Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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264 <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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265 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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266 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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267 <when value="Hierarchy">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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268 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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269 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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270 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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271 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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272 </when>
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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273 <when value="ImmutableMetadata">
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274 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
275 <option value="None" selected="true">export as is (no conversion)</option>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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276 <option value="ImmutableMetadataFormat">Immutable Metadata Format</option>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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277 </param>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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278 </when>
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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279 <when value="MultiplexedPairedEndBarcodeInSequence">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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280 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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281 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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282 <option value="MultiplexedPairedEndBarcodeInSequenceDirFmt">Multiplexed Paired End Barcode In Sequence Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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283 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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284 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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285 <when value="MultiplexedSingleEndBarcodeInSequence">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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286 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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287 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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288 <option value="FastqGzFormat">Fastq Gz Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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289 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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290 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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291 <when value="PCoAResults">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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292 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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293 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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294 <option value="OrdinationFormat">Ordination Format</option>
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295 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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296 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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297 <when value="Phylogeny__ob__Rooted__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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298 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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299 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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300 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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301 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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302 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
303 <when value="Phylogeny__ob__Unrooted__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
304 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
305 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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306 <option value="NewickFormat">Newick Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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307 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
308 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
309 <when value="Placements">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
310 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
311 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
312 <option value="PlacementsFormat">Placements Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
313 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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314 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
315 <when value="ProcrustesStatistics">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
316 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
317 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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318 <option value="ProcrustesStatisticsFmt">Procrustes Statistics Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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319 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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320 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
321 <when value="QualityFilterStats">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
322 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
323 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
324 <option value="QualityFilterStatsFmt">Quality Filter Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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325 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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326 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
327 <when value="RawSequences">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
328 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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329 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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330 <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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331 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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332 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
333 <when value="SampleData__ob__AlphaDiversity__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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334 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
335 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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336 <option value="AlphaDiversityFormat">Alpha Diversity Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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337 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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338 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
339 <when value="SampleData__ob__ArtificialGrouping__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
340 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
341 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
342 <option value="ArtificialGroupingFormat">Artificial Grouping Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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343 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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344 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
345 <when value="SampleData__ob__BooleanSeries__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
346 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
347 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
348 <option value="BooleanSeriesFormat">Boolean Series Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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349 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
350 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
351 <when value="SampleData__ob__ClassifierPredictions__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
352 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
353 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
354 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
355 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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356 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
357 <when value="SampleData__ob__DADA2Stats__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
358 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
359 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
360 <option value="DADA2StatsFormat">DADA2 Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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361 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
362 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
363 <when value="SampleData__ob__FirstDifferences__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
364 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
365 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
366 <option value="FirstDifferencesFormat">First Differences Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
367 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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368 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
369 <when value="SampleData__ob__JoinedSequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
370 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
371 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
372 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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373 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
374 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
375 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
376 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
377 <when value="SampleData__ob__PairedEndSequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
378 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
379 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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380 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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381 <option value="SingleLanePerSamplePairedEndFastqDirFmt">Single Lane Per Sample Paired End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
382 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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383 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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384 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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385 <when value="SampleData__ob__Probabilities__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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386 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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387 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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388 <option value="ProbabilitiesFormat">Probabilities Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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389 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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390 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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391 <when value="SampleData__ob__RegressorPredictions__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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392 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
393 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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394 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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395 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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396 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
397 <when value="SampleData__ob__SequencesWithQuality__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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398 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
399 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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400 <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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401 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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402 <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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403 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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404 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
405 <when value="SampleData__ob__Sequences__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
406 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
407 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
408 <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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409 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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410 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
411 <when value="SampleData__ob__TrueTargets__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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412 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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413 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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414 <option value="PredictionsFormat">Predictions Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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415 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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416 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
417 <when value="SampleEstimator__ob__Classifier__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
418 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
419 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
420 <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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421 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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422 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
423 <when value="SampleEstimator__ob__Regressor__cb__">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
424 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
425 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
426 <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
427 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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428 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
429 <when value="SeppReferenceDatabase">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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430 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
431 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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432 <option value="SeppReferenceDirFmt">Sepp Reference Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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433 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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434 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
435 <when value="TaxonomicClassifier">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
436 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
437 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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438 <option value="TaxonomicClassiferTemporaryPickleDirFmt">Taxonomic Classifer Temporary Pickle Directory Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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439 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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440 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
441 <when value="UchimeStats">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
442 <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
443 <option value="None" selected="true">export as is (no conversion)</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
444 <option value="UchimeStatsFmt">Uchime Stats Format</option>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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445 </param>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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446 </when>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
447 </conditional>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
448 </inputs>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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449 <outputs>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
450 <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}">
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
451 <filter>fmt_finder['output_format'] == 'None' and fmt_peek not in {'QIIME1DemuxFormat', 'DNAFASTAFormat', 'PlacementsDirFmt', 'ImmutableMetadataFormat', 'Bowtie2IndexDirFmt', 'QIIME1DemuxDirFmt', 'AlignedDNASequencesDirectoryFormat', 'DADA2StatsDirFmt', 'AlignedRNASequencesDirectoryFormat', 'OrdinationFormat', 'ProteinFASTAFormat', 'LSMatFormat', 'PairedRNASequencesDirectoryFormat', 'DifferentialFormat', 'MultiplexedPairedEndBarcodeInSequenceDirFmt', 'AlignedProteinFASTAFormat', 'ArtificialGroupingDirectoryFormat', 'RNAFASTAFormat', 'SeppReferenceDirFmt', 'FastqGzFormat', 'ProcrustesStatisticsDirFmt', 'SingleLanePerSampleSingleEndFastqDirFmt', 'QualityFilterStatsFmt', 'PlacementsFormat', 'ProbabilitiesDirectoryFormat', 'ImportanceDirectoryFormat', 'FirstDifferencesFormat', 'TrueTargetsDirectoryFormat', 'ImmutableMetadataDirectoryFormat', 'UchimeStatsDirFmt', 'NewickDirectoryFormat', 'DADA2StatsFormat', 'AlignedDNAFASTAFormat', 'PredictionsDirectoryFormat', 'AlphaDiversityDirectoryFormat', 'MultiplexedSingleEndBarcodeInSequenceDirFmt', 'DeblurStatsDirFmt', 'DNASequencesDirectoryFormat', 'SingleLanePerSamplePairedEndFastqDirFmt', 'UchimeStatsFmt', 'CasavaOneEightSingleLanePerSampleDirFmt', 'ErrorCorrectionDetailsDirFmt', 'BLAST6DirectoryFormat', 'DecontamScoreDirFmt', 'SampleEstimatorDirFmt', 'FirstDifferencesDirectoryFormat', 'QualityFilterStatsDirFmt', 'DistanceMatrixDirectoryFormat', 'DecontamScoreFormat', 'EMPSingleEndDirFmt', 'EMPPairedEndDirFmt', 'DataLoafPackageDirFmt', 'PairedDNASequencesDirectoryFormat', 'BIOMV210DirFmt', 'AlignedRNAFASTAFormat', 'OrdinationDirectoryFormat', 'BIOMV210Format', 'AlphaDiversityFormat', 'ArtificialGroupingFormat', 'DeblurStatsFmt', 'TSVTaxonomyDirectoryFormat', 'PredictionsFormat', 'BooleanSeriesFormat', 'DifferentialDirectoryFormat', 'ProcrustesStatisticsFmt', 'BooleanSeriesDirectoryFormat', 'AlignedProteinSequencesDirectoryFormat', 'TSVTaxonomyFormat', 'NewickFormat', 'ProteinSequencesDirectoryFormat', 'BLAST6Format', 'ImportanceFormat', 'RNASequencesDirectoryFormat', 'TaxonomicClassiferTemporaryPickleDirFmt', 'ProbabilitiesFormat'}</filter>
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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452 <discover_datasets pattern="__designation_and_ext__" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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453 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
454 <data name="AlignedDNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedDNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
455 <filter>fmt_finder['output_format'] == 'AlignedDNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
456 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
457 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
458 <data name="AlignedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedDNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
459 <filter>fmt_finder['output_format'] == 'AlignedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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460 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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461 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
462 <data name="AlignedProteinFASTAFormat" label="${tool.name} on ${on_string} as AlignedProteinFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
463 <filter>fmt_finder['output_format'] == 'AlignedProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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464 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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465 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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466 <data name="AlignedProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedProteinSequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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467 <filter>fmt_finder['output_format'] == 'AlignedProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinSequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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468 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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469 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
470 <data name="AlignedRNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedRNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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471 <filter>fmt_finder['output_format'] == 'AlignedRNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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472 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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473 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
474 <data name="AlignedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedRNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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475 <filter>fmt_finder['output_format'] == 'AlignedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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476 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
477 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
478 <data name="AlphaDiversityDirectoryFormat" label="${tool.name} on ${on_string} as AlphaDiversityDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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479 <filter>fmt_finder['output_format'] == 'AlphaDiversityDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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480 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;alpha-diversity)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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481 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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482 <data name="AlphaDiversityFormat" label="${tool.name} on ${on_string} as AlphaDiversityFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
483 <filter>fmt_finder['output_format'] == 'AlphaDiversityFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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484 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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485 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
486 <data name="ArtificialGroupingDirectoryFormat" label="${tool.name} on ${on_string} as ArtificialGroupingDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
487 <filter>fmt_finder['output_format'] == 'ArtificialGroupingDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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488 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;artificial-groupings)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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489 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
490 <data name="ArtificialGroupingFormat" label="${tool.name} on ${on_string} as ArtificialGroupingFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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491 <filter>fmt_finder['output_format'] == 'ArtificialGroupingFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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492 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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493 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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494 <data name="BIOMV210DirFmt" label="${tool.name} on ${on_string} as BIOMV210DirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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495 <filter>fmt_finder['output_format'] == 'BIOMV210DirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210DirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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496 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;feature-table)\.(?P&lt;ext&gt;biom)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
497 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
498 <data name="BIOMV210Format" label="${tool.name} on ${on_string} as BIOMV210Format">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
499 <filter>fmt_finder['output_format'] == 'BIOMV210Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210Format')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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500 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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501 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
502 <data name="BLAST6DirectoryFormat" label="${tool.name} on ${on_string} as BLAST6DirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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503 <filter>fmt_finder['output_format'] == 'BLAST6DirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6DirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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504 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;blast6)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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505 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
506 <data name="BLAST6Format" label="${tool.name} on ${on_string} as BLAST6Format">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
507 <filter>fmt_finder['output_format'] == 'BLAST6Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6Format')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
508 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
509 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
510 <data name="BooleanSeriesDirectoryFormat" label="${tool.name} on ${on_string} as BooleanSeriesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
511 <filter>fmt_finder['output_format'] == 'BooleanSeriesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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512 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;outliers)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
513 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
514 <data name="BooleanSeriesFormat" label="${tool.name} on ${on_string} as BooleanSeriesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
515 <filter>fmt_finder['output_format'] == 'BooleanSeriesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
516 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
517 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
518 <data name="Bowtie2IndexDirFmt" label="${tool.name} on ${on_string} as Bowtie2IndexDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
519 <filter>fmt_finder['output_format'] == 'Bowtie2IndexDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'Bowtie2IndexDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
520 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
521 <discover_datasets pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
522 <discover_datasets pattern="(?P&lt;designation&gt;.+\.3)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
523 <discover_datasets pattern="(?P&lt;designation&gt;.+\.4)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
524 <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
525 <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
526 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
527 <collection name="CasavaOneEightSingleLanePerSampleDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as CasavaOneEightSingleLanePerSampleDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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528 <filter>fmt_finder['output_format'] == 'CasavaOneEightSingleLanePerSampleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'CasavaOneEightSingleLanePerSampleDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
529 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
530 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
531 <data name="DADA2StatsDirFmt" label="${tool.name} on ${on_string} as DADA2StatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
532 <filter>fmt_finder['output_format'] == 'DADA2StatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
533 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
534 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
535 <data name="DADA2StatsFormat" label="${tool.name} on ${on_string} as DADA2StatsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
536 <filter>fmt_finder['output_format'] == 'DADA2StatsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
537 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
538 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
539 <data name="DNAFASTAFormat" label="${tool.name} on ${on_string} as DNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
540 <filter>fmt_finder['output_format'] == 'DNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
541 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
542 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
543 <data name="DNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as DNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
544 <filter>fmt_finder['output_format'] == 'DNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
545 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
546 </data>
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
547 <collection name="DataLoafPackageDirFmt_data_slices" type="list" label="${tool.name} on ${on_string} as DataLoafPackageDirFmt (data_slices)">
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
548 <filter>fmt_finder['output_format'] == 'DataLoafPackageDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DataLoafPackageDirFmt')</filter>
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
549 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;csv)" visible="false"/>
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
550 </collection>
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
551 <data name="DataLoafPackageDirFmt" label="${tool.name} on ${on_string} as DataLoafPackageDirFmt">
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
552 <filter>fmt_finder['output_format'] == 'DataLoafPackageDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DataLoafPackageDirFmt')</filter>
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
553 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;datapackage)\.(?P&lt;ext&gt;json)" visible="true"/>
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
554 </data>
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
555 <data name="DeblurStatsDirFmt" label="${tool.name} on ${on_string} as DeblurStatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
556 <filter>fmt_finder['output_format'] == 'DeblurStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
557 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
558 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
559 <data name="DeblurStatsFmt" label="${tool.name} on ${on_string} as DeblurStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
560 <filter>fmt_finder['output_format'] == 'DeblurStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
561 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
562 </data>
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
563 <data name="DecontamScoreDirFmt" label="${tool.name} on ${on_string} as DecontamScoreDirFmt">
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
564 <filter>fmt_finder['output_format'] == 'DecontamScoreDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DecontamScoreDirFmt')</filter>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
565 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
566 </data>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
567 <data name="DecontamScoreFormat" label="${tool.name} on ${on_string} as DecontamScoreFormat">
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
568 <filter>fmt_finder['output_format'] == 'DecontamScoreFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DecontamScoreFormat')</filter>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
569 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
570 </data>
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
571 <data name="DifferentialDirectoryFormat" label="${tool.name} on ${on_string} as DifferentialDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
572 <filter>fmt_finder['output_format'] == 'DifferentialDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
573 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;differentials)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
574 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
575 <data name="DifferentialFormat" label="${tool.name} on ${on_string} as DifferentialFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
576 <filter>fmt_finder['output_format'] == 'DifferentialFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
577 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
578 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
579 <data name="DistanceMatrixDirectoryFormat" label="${tool.name} on ${on_string} as DistanceMatrixDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
580 <filter>fmt_finder['output_format'] == 'DistanceMatrixDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DistanceMatrixDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
581 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;distance-matrix)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
582 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
583 <data name="EMPPairedEndDirFmt" label="${tool.name} on ${on_string} as EMPPairedEndDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
584 <filter>fmt_finder['output_format'] == 'EMPPairedEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPPairedEndDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
585 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
586 <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
587 <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
588 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
589 <data name="EMPSingleEndDirFmt" label="${tool.name} on ${on_string} as EMPSingleEndDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
590 <filter>fmt_finder['output_format'] == 'EMPSingleEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPSingleEndDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
591 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sequences)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
592 <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
593 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
594 <data name="ErrorCorrectionDetailsDirFmt" label="${tool.name} on ${on_string} as ErrorCorrectionDetailsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
595 <filter>fmt_finder['output_format'] == 'ErrorCorrectionDetailsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ErrorCorrectionDetailsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
596 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;details)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
597 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
598 <data name="FastqGzFormat" label="${tool.name} on ${on_string} as FastqGzFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
599 <filter>fmt_finder['output_format'] == 'FastqGzFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FastqGzFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
600 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
601 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
602 <data name="FirstDifferencesDirectoryFormat" label="${tool.name} on ${on_string} as FirstDifferencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
603 <filter>fmt_finder['output_format'] == 'FirstDifferencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
604 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;FirstDifferences)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
605 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
606 <data name="FirstDifferencesFormat" label="${tool.name} on ${on_string} as FirstDifferencesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
607 <filter>fmt_finder['output_format'] == 'FirstDifferencesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
608 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
609 </data>
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
610 <data name="ImmutableMetadataDirectoryFormat" label="${tool.name} on ${on_string} as ImmutableMetadataDirectoryFormat">
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
611 <filter>fmt_finder['output_format'] == 'ImmutableMetadataDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImmutableMetadataDirectoryFormat')</filter>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
612 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;tsv)" visible="true"/>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
613 </data>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
614 <data name="ImmutableMetadataFormat" label="${tool.name} on ${on_string} as ImmutableMetadataFormat">
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
615 <filter>fmt_finder['output_format'] == 'ImmutableMetadataFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImmutableMetadataFormat')</filter>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
616 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
617 </data>
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
618 <data name="ImportanceDirectoryFormat" label="${tool.name} on ${on_string} as ImportanceDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
619 <filter>fmt_finder['output_format'] == 'ImportanceDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
620 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;importance)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
621 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
622 <data name="ImportanceFormat" label="${tool.name} on ${on_string} as ImportanceFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
623 <filter>fmt_finder['output_format'] == 'ImportanceFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
624 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
625 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
626 <data name="LSMatFormat" label="${tool.name} on ${on_string} as LSMatFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
627 <filter>fmt_finder['output_format'] == 'LSMatFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'LSMatFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
628 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
629 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
630 <data name="MultiplexedPairedEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedPairedEndBarcodeInSequenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
631 <filter>fmt_finder['output_format'] == 'MultiplexedPairedEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedPairedEndBarcodeInSequenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
632 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
633 <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
634 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
635 <data name="MultiplexedSingleEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedSingleEndBarcodeInSequenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
636 <filter>fmt_finder['output_format'] == 'MultiplexedSingleEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedSingleEndBarcodeInSequenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
637 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
638 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
639 <data name="NewickDirectoryFormat" label="${tool.name} on ${on_string} as NewickDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
640 <filter>fmt_finder['output_format'] == 'NewickDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
641 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
642 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
643 <data name="NewickFormat" label="${tool.name} on ${on_string} as NewickFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
644 <filter>fmt_finder['output_format'] == 'NewickFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
645 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
646 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
647 <data name="OrdinationDirectoryFormat" label="${tool.name} on ${on_string} as OrdinationDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
648 <filter>fmt_finder['output_format'] == 'OrdinationDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
649 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ordination)\.(?P&lt;ext&gt;txt)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
650 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
651 <data name="OrdinationFormat" label="${tool.name} on ${on_string} as OrdinationFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
652 <filter>fmt_finder['output_format'] == 'OrdinationFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
653 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
654 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
655 <data name="PairedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedDNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
656 <filter>fmt_finder['output_format'] == 'PairedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedDNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
657 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
658 <discover_datasets pattern="(?P&lt;designation&gt;right-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
659 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
660 <data name="PairedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedRNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
661 <filter>fmt_finder['output_format'] == 'PairedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedRNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
662 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
663 <discover_datasets pattern="(?P&lt;designation&gt;right-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
664 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
665 <data name="PlacementsDirFmt" label="${tool.name} on ${on_string} as PlacementsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
666 <filter>fmt_finder['output_format'] == 'PlacementsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
667 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;placements)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
668 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
669 <data name="PlacementsFormat" label="${tool.name} on ${on_string} as PlacementsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
670 <filter>fmt_finder['output_format'] == 'PlacementsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
671 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
672 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
673 <data name="PredictionsDirectoryFormat" label="${tool.name} on ${on_string} as PredictionsDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
674 <filter>fmt_finder['output_format'] == 'PredictionsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
675 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;predictions)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
676 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
677 <data name="PredictionsFormat" label="${tool.name} on ${on_string} as PredictionsFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
678 <filter>fmt_finder['output_format'] == 'PredictionsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
679 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
680 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
681 <data name="ProbabilitiesDirectoryFormat" label="${tool.name} on ${on_string} as ProbabilitiesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
682 <filter>fmt_finder['output_format'] == 'ProbabilitiesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
683 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;class_probabilities)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
684 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
685 <data name="ProbabilitiesFormat" label="${tool.name} on ${on_string} as ProbabilitiesFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
686 <filter>fmt_finder['output_format'] == 'ProbabilitiesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
687 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
688 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
689 <data name="ProcrustesStatisticsDirFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
690 <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
691 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ProcrustesStatistics)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
692 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
693 <data name="ProcrustesStatisticsFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
694 <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
695 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
696 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
697 <data name="ProteinFASTAFormat" label="${tool.name} on ${on_string} as ProteinFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
698 <filter>fmt_finder['output_format'] == 'ProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
699 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
700 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
701 <data name="ProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as ProteinSequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
702 <filter>fmt_finder['output_format'] == 'ProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinSequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
703 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
704 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
705 <data name="QIIME1DemuxDirFmt" label="${tool.name} on ${on_string} as QIIME1DemuxDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
706 <filter>fmt_finder['output_format'] == 'QIIME1DemuxDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
707 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;seqs)\.(?P&lt;ext&gt;fna)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
708 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
709 <data name="QIIME1DemuxFormat" label="${tool.name} on ${on_string} as QIIME1DemuxFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
710 <filter>fmt_finder['output_format'] == 'QIIME1DemuxFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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diff changeset
711 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
712 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
713 <data name="QualityFilterStatsDirFmt" label="${tool.name} on ${on_string} as QualityFilterStatsDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
714 <filter>fmt_finder['output_format'] == 'QualityFilterStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
715 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
716 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
717 <data name="QualityFilterStatsFmt" label="${tool.name} on ${on_string} as QualityFilterStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
718 <filter>fmt_finder['output_format'] == 'QualityFilterStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
719 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
720 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
721 <data name="RNAFASTAFormat" label="${tool.name} on ${on_string} as RNAFASTAFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
722 <filter>fmt_finder['output_format'] == 'RNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNAFASTAFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
723 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
724 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
725 <data name="RNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as RNASequencesDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
726 <filter>fmt_finder['output_format'] == 'RNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNASequencesDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
727 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
728 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
729 <data name="SampleEstimatorDirFmt" label="${tool.name} on ${on_string} as SampleEstimatorDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
730 <filter>fmt_finder['output_format'] == 'SampleEstimatorDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SampleEstimatorDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
731 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
732 <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
733 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
734 <data name="SeppReferenceDirFmt" label="${tool.name} on ${on_string} as SeppReferenceDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
735 <filter>fmt_finder['output_format'] == 'SeppReferenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SeppReferenceDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
736 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
737 <discover_datasets pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
738 <discover_datasets pattern="(?P&lt;designation&gt;raxml-info)\.(?P&lt;ext&gt;txt)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
739 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
740 <collection name="SingleLanePerSamplePairedEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
741 <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
742 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
743 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
744 <data name="SingleLanePerSamplePairedEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
745 <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
746 <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
747 <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
748 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
749 <collection name="SingleLanePerSampleSingleEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt (sequences)">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
750 <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
751 <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
752 </collection>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
753 <data name="SingleLanePerSampleSingleEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
754 <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
755 <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
756 <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
757 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
758 <data name="TSVTaxonomyDirectoryFormat" label="${tool.name} on ${on_string} as TSVTaxonomyDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
759 <filter>fmt_finder['output_format'] == 'TSVTaxonomyDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
760 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;taxonomy)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
761 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
762 <data name="TSVTaxonomyFormat" label="${tool.name} on ${on_string} as TSVTaxonomyFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
763 <filter>fmt_finder['output_format'] == 'TSVTaxonomyFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
764 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
765 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
766 <data name="TaxonomicClassiferTemporaryPickleDirFmt" label="${tool.name} on ${on_string} as TaxonomicClassiferTemporaryPickleDirFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
767 <filter>fmt_finder['output_format'] == 'TaxonomicClassiferTemporaryPickleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TaxonomicClassiferTemporaryPickleDirFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
768 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
769 <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
770 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
771 <data name="TrueTargetsDirectoryFormat" label="${tool.name} on ${on_string} as TrueTargetsDirectoryFormat">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
772 <filter>fmt_finder['output_format'] == 'TrueTargetsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TrueTargetsDirectoryFormat')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
773 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;true_targets)\.(?P&lt;ext&gt;tsv)" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
774 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
775 <data name="UchimeStatsDirFmt" label="${tool.name} on ${on_string} as UchimeStatsDirFmt">
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776 <filter>fmt_finder['output_format'] == 'UchimeStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsDirFmt')</filter>
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777 <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
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778 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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779 <data name="UchimeStatsFmt" label="${tool.name} on ${on_string} as UchimeStatsFmt">
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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780 <filter>fmt_finder['output_format'] == 'UchimeStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsFmt')</filter>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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781 <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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782 </data>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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783 </outputs>
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784 <help>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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785 QIIME 2: tools export
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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786 =====================
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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787 Export a QIIME 2 artifact to different formats
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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788
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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789 Instructions
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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790 ------------
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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791
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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792 1. Select the QZA you would like to export. Once selected, two fields will
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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793 update indicating the type and format of this QZA.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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794
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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795 2. If you wish to change the output format, first provide the same type as
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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796 the QZA (which is shown above). This will filter the avaiable formats.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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797
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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798 3. Select the format you desire. Some limited documentation is available on
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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799 these formats below.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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800
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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801 **IMPORTANT:** if you select the wrong type when exporting, you will recieve an
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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802 error suggesting "No transformation from &lt;X&gt; to &lt;Y&gt;".
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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803
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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804 Formats:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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805 --------
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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806 These formats have documentation available.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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807
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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808 QIIME1DemuxFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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809 *****************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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810 QIIME 1 demultiplexed FASTA format.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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811
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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812 The QIIME 1 demultiplexed FASTA format is the default output format of
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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813 ``split_libraries.py`` and ``split_libraries_fastq.py``. The file output by
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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814 QIIME 1 is named ``seqs.fna``; this filename is sometimes associated with
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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815 the file format itself due to its widespread usage in QIIME 1.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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816
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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817 The format is documented here:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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818 http://qiime.org/documentation/file_formats.html#demultiplexed-sequences
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819
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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820 Format details:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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821
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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822 - FASTA file with exactly two lines per record: header and sequence. Each
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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823 sequence must span exactly one line and cannot be split across multiple
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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824 lines.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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825
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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826 - The ID in each header must follow the format ``&lt;sample-id&gt;_&lt;seq-id&gt;``.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
827 ``&lt;sample-id&gt;`` is the identifier of the sample the sequence belongs to,
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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828 and ``&lt;seq-id&gt;`` is an identifier for the sequence *within* its sample.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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829 In QIIME 1, ``&lt;seq-id&gt;`` is typically an incrementing integer starting
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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830 from zero, but any non-empty value can be used here, as long as the
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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831 header IDs remain unique throughout the file. Note: ``&lt;sample-id&gt;`` may
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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832 contain sample IDs that contain underscores; the rightmost underscore
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
833 will used to delimit sample and sequence IDs.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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834
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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835 - Descriptions in headers are permitted and ignored.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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836
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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837 - Header IDs must be unique within the file.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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838
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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839 - Each sequence must be DNA and cannot be empty.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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840
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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841
2
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diff changeset
842 TSVTaxonomyFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
843 *****************
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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844 Format for a 2+ column TSV file with an expected minimal header.
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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845
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846 The only header recognized by this format is:
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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847
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
848 Feature ID&lt;tab&gt;Taxon
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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849
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
850 Optionally followed by other arbitrary columns.
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
851
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
852 This format supports blank lines. The expected header must be the first
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
853 non-blank line. In addition to the header, there must be at least one line
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
854 of data.
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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diff changeset
855
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
856
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
857 FastqGzFormat
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
858 *************
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
859
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
860 A gzipped fastq file.
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
861
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
862
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
863 Additional formats without documentation:
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
864 *****************************************
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
865 - FirstDifferencesFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
866 - DecontamScoreDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
867 - OrdinationDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
868 - EMPPairedEndDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
869 - ImmutableMetadataFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
870 - PredictionsDirectoryFormat
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
871 - AlphaDiversityDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
872 - DataLoafPackageDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
873 - AlignedDNAFASTAFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
874 - DADA2StatsDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
875 - TrueTargetsDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
876 - UchimeStatsFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
877 - BLAST6Format
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
878 - PairedDNASequencesDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
879 - QIIME1DemuxDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
880 - QualityFilterStatsFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
881 - DADA2StatsFormat
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
882 - AlignedProteinFASTAFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
883 - PlacementsFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
884 - NewickFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
885 - ProbabilitiesDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
886 - ErrorCorrectionDetailsDirFmt
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
887 - ProteinFASTAFormat
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
888 - RNAFASTAFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
889 - MultiplexedSingleEndBarcodeInSequenceDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
890 - BooleanSeriesFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
891 - LSMatFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
892 - ImportanceDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
893 - DeblurStatsFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
894 - AlignedRNASequencesDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
895 - QualityFilterStatsDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
896 - TaxonomicClassiferTemporaryPickleDirFmt
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
897 - BooleanSeriesDirectoryFormat
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
898 - DifferentialDirectoryFormat
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents: 0
diff changeset
899 - DNAFASTAFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
900 - ProcrustesStatisticsFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
901 - PlacementsDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
902 - EMPSingleEndDirFmt
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
903 - DecontamScoreFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
904 - BIOMV210DirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
905 - ImmutableMetadataDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
906 - AlignedDNASequencesDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
907 - TSVTaxonomyDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
908 - OrdinationFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
909 - FirstDifferencesDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
910 - Bowtie2IndexDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
911 - BIOMV210Format
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
912 - SingleLanePerSampleSingleEndFastqDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
913 - SampleEstimatorDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
914 - PairedRNASequencesDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
915 - CasavaOneEightSingleLanePerSampleDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
916 - AlignedProteinSequencesDirectoryFormat
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
917 - UchimeStatsDirFmt
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
918 - NewickDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
919 - SingleLanePerSamplePairedEndFastqDirFmt
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
920 - DifferentialFormat
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
921 - ProteinSequencesDirectoryFormat
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
922 - RNASequencesDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
923 - MultiplexedPairedEndBarcodeInSequenceDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
924 - AlphaDiversityFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
925 - DistanceMatrixDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
926 - ArtificialGroupingFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
927 - ArtificialGroupingDirectoryFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
928 - ProbabilitiesFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
929 - DeblurStatsDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
930 - SeppReferenceDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
q2d2
parents: 1
diff changeset
931 - ImportanceFormat
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
932 - BLAST6DirectoryFormat
1
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
933 - AlignedRNAFASTAFormat
d3b1853c4efd planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents: 0
diff changeset
934 - DNASequencesDirectoryFormat
2
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
935 - ProcrustesStatisticsDirFmt
ddff0f6d5740 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556
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parents: 1
diff changeset
936 - PredictionsFormat
0
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff changeset
937 </help>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
938 <citations>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff changeset
939 <citation type="doi">10.1038/s41587-019-0209-9</citation>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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940 </citations>
0214b9ae8a6e planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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941 </tool>