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1 Galaxy wrappers for USEARCH - UPARSE (OTU Clustering)
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2 =====================================================
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3
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4 USEARCH requires a licence. Therefore an automated installation is not
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5 possible at the moment.
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6
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7 Requirements
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8 =====================================================
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9 Get your licenced USEARCH version 7, but not later then 7.0.1002 from here:
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10 http://www.drive5.com/usearch/download.html
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11
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12
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13 Manual Installation Steps
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14 =====================================================
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15 USEARCH is distributed as one file, known as the binary file or executable
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16 file. It is completely self-contained: it does not require configuration
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17 files, environment variables, third-party libraries or other external
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18 dependencies. There is no setup script or installer because they're not
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19 needed. To install it, all you do is download or copy the binary to a
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20 directory that is accessible from the computer where you want to run the code.
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21
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22 Step1:
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23 Rename the binary file to usearch.
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24
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25 Step2:
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26 Move the binary file (usearch) to /usr/local/bin
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27 Ensure /usr/local/bin is in your path. If needed add /usr/local/bin/ to your
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28 path.
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29
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30 Step3:
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31 Ensure that you have read and execute permissions for the binary file.
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32 If needed, use the chmod command to set the execute bit, e.g.:
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33 chmod +x /usr/local/bin/usearch
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34
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35
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36 Further installation information and help can be found at:
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37 http://drive5.com/usearch/manual/install.html
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38
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39
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40 Disclaimer
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41 =====================================================
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42 This source code is provided by QFAB Bioinformatics "as is", in the hope that it will be
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43 useful, and any express or implied warranties, including, but not limited to,
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44 the implied warranties of merchantability and fitness for a particular purpose
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45 are disclaimed.
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46 IN NO EVENT SHALL QFAB BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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47 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY
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48 OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT(INCLUDING
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49 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOURCE
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50 CODE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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51
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52 License
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53 =====================================================
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54 This work by QFAB Bioinformatics (as part of the GVL project http://genome.edu.au)
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55 is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0
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56 International License.
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