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"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
author qfabrepo
date Mon, 14 Sep 2020 04:50:28 +0000
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ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
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1 F3D0 Assembled reads ...................: 91 / 99 (91.919%) Discarded reads ...................: 0 / 99 (0.000%) Not assembled reads ...............: 8 / 99 (8.081%)
ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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2 F3D1 Assembled reads ...................: 89 / 97 (91.753%) Discarded reads ...................: 0 / 97 (0.000%) Not assembled reads ...............: 8 / 97 (8.247%)
ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
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ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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6 The above assessment has been performed on 1000 randomly selected reads per sample file.
ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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7 Average % of overlapping paired-end reads = 91.836
ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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8 If the average percentage is greater than 50%, you can consider using workflow 16S_biodiversity_for_overlap_PE.
ec62f17fcfe6 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
qfabrepo
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9 However, if the average percentage is less than 50%, use 16S_biodiversity_nonoverlap_PE.