Mercurial > repos > qfabrepo > metadegalaxy_pear_stats
diff test-data/F3D1.log @ 0:ec62f17fcfe6 draft default tip
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
| author | qfabrepo |
|---|---|
| date | Mon, 14 Sep 2020 04:50:28 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/F3D1.log Mon Sep 14 04:50:28 2020 +0000 @@ -0,0 +1,36 @@ + ____ _____ _ ____ +| _ \| ____| / \ | _ \ +| |_) | _| / _ \ | |_) | +| __/| |___ / ___ \| _ < +|_| |_____/_/ \_\_| \_\ + +PEAR v0.9.10 [May 30, 2016] + +Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR +Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593 + +Forward reads file.................: /mnt/galaxy/files/011/dataset_11546.dat +Reverse reads file.................: /mnt/galaxy/files/011/dataset_11547.dat +PHRED..............................: 33 +Using empirical frequencies........: NO +Statistical method.................: OES +Maximum assembly length............: 999999 +Minimum assembly length............: 50 +p-value............................: 0.010000 +Quality score threshold (trimming).: 0 +Minimum read size after trimming...: 1 +Maximal ratio of uncalled bases....: 1.000000 +Minimum overlap....................: 10 +Scoring method.....................: Scaled score +Threads............................: 2 + +Allocating memory..................: 200,000,000 bytes +Assemblying reads: 0% Assemblying reads: 100% + +Assembled reads ...................: 89 / 97 (91.753%) +Discarded reads ...................: 0 / 97 (0.000%) +Not assembled reads ...............: 8 / 97 (8.247%) +Assembled reads file...............: pear.assembled.fastq +Discarded reads file...............: pear.discarded.fastq +Unassembled forward reads file.....: pear.unassembled.forward.fastq +Unassembled reverse reads file.....: pear.unassembled.reverse.fastq