Mercurial > repos > qfabrepo > metadegalaxy_pear_stats
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"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
| author | qfabrepo |
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| date | Mon, 14 Sep 2020 04:50:28 +0000 |
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____ _____ _ ____ | _ \| ____| / \ | _ \ | |_) | _| / _ \ | |_) | | __/| |___ / ___ \| _ < |_| |_____/_/ \_\_| \_\ PEAR v0.9.10 [May 30, 2016] Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593 Forward reads file.................: /mnt/galaxy/files/011/dataset_11546.dat Reverse reads file.................: /mnt/galaxy/files/011/dataset_11547.dat PHRED..............................: 33 Using empirical frequencies........: NO Statistical method.................: OES Maximum assembly length............: 999999 Minimum assembly length............: 50 p-value............................: 0.010000 Quality score threshold (trimming).: 0 Minimum read size after trimming...: 1 Maximal ratio of uncalled bases....: 1.000000 Minimum overlap....................: 10 Scoring method.....................: Scaled score Threads............................: 2 Allocating memory..................: 200,000,000 bytes Assemblying reads: 0% Assemblying reads: 100% Assembled reads ...................: 89 / 97 (91.753%) Discarded reads ...................: 0 / 97 (0.000%) Not assembled reads ...............: 8 / 97 (8.247%) Assembled reads file...............: pear.assembled.fastq Discarded reads file...............: pear.discarded.fastq Unassembled forward reads file.....: pear.unassembled.forward.fastq Unassembled reverse reads file.....: pear.unassembled.reverse.fastq