Mercurial > repos > r-lannes > cut_include_exclude
diff cut_fr.xml @ 1:59bd6cbbeb92 draft
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author | r-lannes |
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date | Wed, 16 Dec 2015 08:46:07 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cut_fr.xml Wed Dec 16 08:46:07 2015 -0500 @@ -0,0 +1,55 @@ +<!-- <cut_fr.xml is script allwoing more convenient use of cut in galaxy environment> + Copyright (C) <2015> <Lannes Romain> + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>.''' --> +<tool id="cut_fr" name="cut_francais" version="1.0"> + <description> keep or remove selected column </description> + <command interpreter="python3"> cut_fr.py + --c $column + --i $datasets + --type_cut $choice + --extend_print $extend_print + --o $output + + </command> + <inputs> + <param name = "column" type = "text" format = "txt" value = "c1" label = "column(s)" /> + <param name = "datasets" type = "data" format = "txt" value = "a tsv file" label = "dataset" /> + <param name = "choice" type = "select" display = "radio" label = "choose cut type :" > + <option value = "exclude" > Exclude </option> + <option value = "include" > Include </option> + </param> + <param name = "extend_print" type ="select" label = "extended print"> + <option value = "False" > False </option> + <option value = "True" > True </option> + </param> + </inputs> + + <outputs> + <data name = "output" label="${tool.name} on ${datasets.name}" format = "tabular"/> + + </outputs> + <help> + <![CDATA[ + return a datasets with only or less specified column + + To select only selected column choose option Include. + + To remove selected column choose option Exclude. + + extended print add print in strdout like input paramter, command launch by the system. + + ]]> </help> + +</tool>